Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0018370

Physical Location & Seq

Genomic Coordinates Reverse (-)

4342147 .. 4342605

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g05250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTCGACTGAGAACAAGAAGATGTTGACCCTGAAGAGTGAGGACGGAGAGGTATTCGAGATTGAAGAGACTGTTGCTGTTCAGTCACAGACCATCAAGCACATGGTGGAGGATGACTGCGCTGACAACGCTATCCCCTTGCCCAACGTGAAAGGCCCCATTCTTGCCAGGGTCATCGAGTACCTAAAGAAGCACGTTGCTGATGCTGAGGACAATAAGGAAAGCAAGAAAGAAGATGTGGAGTCTCTCAAGAAATTCGACGATGAATTCCTCAAGGTGGACCAGAGCGTGCTGTTTGACCTGATATTGGCAGCCAACTATCTGAACATCAAGGAGCTGTTGGACTTGACATGTCAGGAGACTCCCGAACAGATTCGCAAGACTTTCAACATCAAGAATGACTTCACCCCTGAGGAAGAAGAGGAGGTTCGAAGGGAGAACCAATGGGCTTTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

153

Amino Acids

17.64

Weight (kDa)

4.54

Isoelectric Point (pI)

63.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	7 - 66	4.6e-26	Skp1 family, tetramerisation domain
Skp1	PF01466	111 - 150	6.6e-15	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018370)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05250 FvH4_5g29420
rosa_multiflora	Rmu_sc0004101.1_g000052 Rmu_sc0006045.1_g000003
rosa_roxburghii	Rroxscaffold_1G00007680 Rroxscaffold_1G00023770
rosa_samantha	Rh5BG502900 Rh5CG526000 Rh5DG395400 Rh5DG395500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AcsI	RAATTY	2 cut(s)	254, 266
AcuI	CTGAAG	1 cut(s)	53
AdeI	CACNNNGTG	1 cut(s)	106
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	2 cut(s)	277, 307
AflIII	ACRYGT	1 cut(s)	350
AgsI	TTSAA	2 cut(s)	65, 388
AjnI	CCWGG	1 cut(s)	167
AluBI	AGCT	1 cut(s)	337
AluI	AGCT	1 cut(s)	337
Alw26I	GTCTC	3 cut(s)	62, 249, 353
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	1 cut(s)	311
ApoI	RAATTY	2 cut(s)	254, 266
Asp700I	GAANNNNTTC	2 cut(s)	372, 401
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	2 cut(s)	155, 280
AsuHPI	GGTGA	1 cut(s)	397
AsuII	TTCGAA	1 cut(s)	430
AvaII	GGWCC	1 cut(s)	280
AxyI	CCTNAGG	1 cut(s)	411
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	323
BccI	CCATC	1 cut(s)	101
BciT130I	CCWGG	1 cut(s)	169
BcoDI	GTCTC	3 cut(s)	62, 249, 353
BisI	GCNGC	1 cut(s)	312
BlsI	GCNGC	1 cut(s)	313
Bme1390I	CCNGG	1 cut(s)	169
Bme18I	GGWCC	1 cut(s)	280
BmgT120I	GGNCC	2 cut(s)	155, 280
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	1 cut(s)	169
BmsI	GCATC	1 cut(s)	193
Bpu10I	CCTNAGC	1 cut(s)	207
Bpu14I	TTCGAA	1 cut(s)	430
BpuEI	CTTGAG	2 cut(s)	233, 257
BsaJI	CCNNGG	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	2 cut(s)	277, 307
Bse21I	CCTNAGG	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	1 cut(s)	168
BseGI	GGATG	1 cut(s)	118
BseLI	CCNNNNNNNGG	2 cut(s)	277, 307
BseMII	CTCAG	2 cut(s)	198, 402
BseRI	GAGGAG	1 cut(s)	437
BseXI	GCAGC	1 cut(s)	323
BshFI	GGCC	1 cut(s)	156
BslI	CCNNNNNNNGG	2 cut(s)	277, 307
BsmAI	GTCTC	3 cut(s)	62, 249, 353
BsnI	GGCC	1 cut(s)	156
Bsp119I	TTCGAA	1 cut(s)	430
BspANI	GGCC	1 cut(s)	156
BspCNI	CTCAG	2 cut(s)	199, 403
BspLI	GGNNCC	1 cut(s)	157
BspT104I	TTCGAA	1 cut(s)	430
BssECI	CCNNGG	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	1 cut(s)	73
Bst6I	CTCTTC	3 cut(s)	29, 60, 414
BstBI	TTCGAA	1 cut(s)	430
BstC8I	GCNNGC	1 cut(s)	290
BstDEI	CTNAG	3 cut(s)	9, 207, 411
BstF5I	GGATG	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	122
BstMAI	GTCTC	3 cut(s)	62, 249, 353
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNI	CCWGG	1 cut(s)	169
BstNSI	RCATGY	1 cut(s)	354
BstSCI	CCNGG	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	323
Bsu36I	CCTNAGG	1 cut(s)	411
BsuRI	GGCC	1 cut(s)	156
BtsCI	GGATG	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	290
CfoI	GCGC	1 cut(s)	122
Cfr13I	GGNCC	2 cut(s)	155, 280
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	2 cut(s)	103, 351
CviJI	RGCY	4 cut(s)	156, 314, 337, 449
CviKI_1	RGCY	4 cut(s)	156, 314, 337, 449
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	3 cut(s)	9, 207, 411
DraIII	CACNNNGTG	1 cut(s)	106
Eam1104I	CTCTTC	3 cut(s)	29, 60, 414
EarI	CTCTTC	3 cut(s)	29, 60, 414
Eco47I	GGWCC	1 cut(s)	280
Eco57I	CTGAAG	1 cut(s)	53
Eco81I	CCTNAGG	1 cut(s)	411
EcoO109I	RGGNCCY	1 cut(s)	155
EcoRI	GAATTC	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	167
FaeI	CATG	2 cut(s)	106, 354
FaiI	YATR	2 cut(s)	104, 352
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FatI	CATG	2 cut(s)	102, 350
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	312
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	312
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	1 cut(s)	312
HaeIII	GGCC	1 cut(s)	156
HhaI	GCGC	1 cut(s)	122
Hin1II	CATG	2 cut(s)	106, 354
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HincII	GTYRAC	2 cut(s)	6, 27
HindII	GTYRAC	2 cut(s)	6, 27
HinfI	GANTC	3 cut(s)	242, 361, 373
HphI	GGTGA	1 cut(s)	397
Hpy166II	GTNNAC	3 cut(s)	6, 27, 280
Hpy188I	TCNGA	1 cut(s)	324
Hpy188III	TCNNGA	5 cut(s)	58, 250, 356, 365, 394
Hpy8I	GTNNAC	3 cut(s)	6, 27, 280
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	1 cut(s)	426
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4IV	ACGT	2 cut(s)	147, 195
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	3 cut(s)	9, 207, 411
HpySE526I	ACGT	2 cut(s)	147, 195
Hsp92II	CATG	2 cut(s)	106, 354
HspAI	GCGC	1 cut(s)	120
LmnI	GCTCC	1 cut(s)	334
LpnPI	CCDG	7 cut(s)	44, 154, 181, 296, 314, 341, 423
Lsp1109I	GCAGC	1 cut(s)	323
LweI	GCATC	1 cut(s)	193
MaeII	ACGT	2 cut(s)	147, 195
MaeIII	GTNAC	1 cut(s)	84
MboII	GAAGA	6 cut(s)	31, 46, 77, 245, 428, 431
MluCI	AATT	2 cut(s)	254, 266
MlyI	GAGTC	2 cut(s)	251, 355
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	8 cut(s)	34, 43, 103, 202, 281, 406, 415, 418
MroXI	GAANNNNTTC	2 cut(s)	372, 401
MspR9I	CCNGG	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	169
MwoI	GCNNNNNNNGC	1 cut(s)	128
NlaIII	CATG	2 cut(s)	106, 354
NlaIV	GGNNCC	1 cut(s)	157
NmuCI	GTSAC	1 cut(s)	84
NspI	RCATGY	1 cut(s)	354
NspV	TTCGAA	1 cut(s)	430
PciI	ACATGT	1 cut(s)	350
PdmI	GAANNNNTTC	2 cut(s)	372, 401
PfeI	GAWTC	1 cut(s)	373
PkrI	GCNGC	1 cut(s)	313
PleI	GAGTC	2 cut(s)	250, 355
PpsI	GAGTC	2 cut(s)	250, 355
PscI	ACATGT	1 cut(s)	350
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	2 cut(s)	155, 280
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SalI	GTCGAC	1 cut(s)	4
SatI	GCNGC	1 cut(s)	312
Sau96I	GGNCC	2 cut(s)	155, 280
SchI	GAGTC	2 cut(s)	251, 355
ScrFI	CCNGG	1 cut(s)	169
SetI	ASST	8 cut(s)	54, 150, 186, 198, 279, 303, 339, 429
SfaNI	GCATC	1 cut(s)	193
SfuI	TTCGAA	1 cut(s)	430
SinI	GGWCC	1 cut(s)	280
SmlI	CTYRAG	2 cut(s)	248, 272
SmoI	CTYRAG	2 cut(s)	248, 272
Sse9I	AATT	2 cut(s)	254, 266
StyD4I	CCNGG	1 cut(s)	167
TaaI	ACNGT	1 cut(s)	73
TaiI	ACGT	2 cut(s)	150, 198
TaqI	TCGA	5 cut(s)	5, 57, 177, 258, 430
TasI	AATT	2 cut(s)	254, 266
TfiI	GAWTC	1 cut(s)	373
TseFI	GTSAC	1 cut(s)	84
TseI	GCWGC	1 cut(s)	311
Tsp45I	GTSAC	1 cut(s)	84
TspDTI	ATGAA	1 cut(s)	279
TspGWI	ACGGA	1 cut(s)	60
VpaK11BI	GGWCC	1 cut(s)	280
XapI	RAATTY	2 cut(s)	254, 266
XceI	RCATGY	1 cut(s)	354
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	2 cut(s)	372, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.