Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0018370

Physical Location & Seq

Genomic Coordinates Forward (+)

20395761 .. 20396449

Gene Structure 689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g29420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTCGACTGAGAACAAGAAGATGCTGACCCTGAAGAGTGAGGACGGAGAGGTATTTGAGATTGAAGAGGCTGTTGCTGTTCAGTCACAGACCATCAAGCACATGGTGGAGGATGACTGCGCCGACAACGCTATCCCCTTGCCCAACGTGAAAGGCCCCATTCTTGCTAGGGTCATCGAGTACCTAAAGAAGCACGTTGCTGATGCTGAAGAGAATAAGGAAAGCAAGAAAGAAGATGTGGGACTCAAGGAATTCGACGAAGAATTCCTCAAGGTGGACCAGAGCGTGCTGTTTGATCTGATATTGGCAGCCAACTATCTGAACATCAAGGAGCTGCTGGACTTGACATGTCAGGCTGTGGCGGACATGATCAAGGGAAAGACTCCCGAACAGATTCGCAAGACTTTCAACATCAAGAATGACTTCACCCCTGAGGAAGAAGAGGCGGTTCGAAGGGAGAACCAATGGGCTTTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

160

Amino Acids

18.2

Weight (kDa)

4.64

Isoelectric Point (pI)

56.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	7 - 66	2.4e-26	Skp1 family, tetramerisation domain
Skp1	PF01466	110 - 157	1.1e-30	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018370)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05250 FvH4_5g29420
rosa_multiflora	Rmu_sc0004101.1_g000052 Rmu_sc0006045.1_g000003
rosa_roxburghii	Rroxscaffold_1G00007680 Rroxscaffold_1G00023770
rosa_samantha	Rh5BG502900 Rh5CG526000 Rh5DG395400 Rh5DG395500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	2 cut(s)	362, 446
AcsI	RAATTY	2 cut(s)	251, 263
AcuI	CTGAAG	2 cut(s)	53, 228
AdeI	CACNNNGTG	1 cut(s)	106
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	274
AflIII	ACRYGT	1 cut(s)	347
AgsI	TTSAA	2 cut(s)	65, 409
AluBI	AGCT	1 cut(s)	334
AluI	AGCT	1 cut(s)	334
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	2 cut(s)	308, 334
ApoI	RAATTY	2 cut(s)	251, 263
Asp700I	GAANNNNTTC	2 cut(s)	393, 422
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	2 cut(s)	155, 277
AsuHPI	GGTGA	1 cut(s)	418
AsuII	TTCGAA	1 cut(s)	451
AvaII	GGWCC	1 cut(s)	277
AxyI	CCTNAGG	1 cut(s)	432
BbvI	GCAGC	2 cut(s)	320, 321
BccI	CCATC	1 cut(s)	101
BclI	TGATCA	1 cut(s)	369
BfaI	CTAG	1 cut(s)	168
BisI	GCNGC	2 cut(s)	309, 335
BlsI	GCNGC	2 cut(s)	310, 336
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	2 cut(s)	155, 277
BmiI	GGNNCC	1 cut(s)	157
BmsI	GCATC	2 cut(s)	12, 193
Bpu14I	TTCGAA	1 cut(s)	451
BpuEI	CTTGAG	2 cut(s)	230, 254
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse21I	CCTNAGG	1 cut(s)	432
BseGI	GGATG	1 cut(s)	118
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseMII	CTCAG	1 cut(s)	423
BseXI	GCAGC	2 cut(s)	320, 321
BshFI	GGCC	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	255
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmFI	GGGAC	1 cut(s)	255
BsnI	GGCC	1 cut(s)	156
Bsp119I	TTCGAA	1 cut(s)	451
Bsp143I	GATC	2 cut(s)	295, 369
BspACI	CCGC	2 cut(s)	362, 446
BspANI	GGCC	1 cut(s)	156
BspCNI	CTCAG	1 cut(s)	424
BspLI	GGNNCC	1 cut(s)	157
BspT104I	TTCGAA	1 cut(s)	451
BssMI	GATC	2 cut(s)	295, 369
Bst6I	CTCTTC	4 cut(s)	29, 60, 204, 435
BstBI	TTCGAA	1 cut(s)	451
BstC8I	GCNNGC	1 cut(s)	287
BstDEI	CTNAG	2 cut(s)	9, 432
BstF5I	GGATG	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	2 cut(s)	298, 372
BstMBI	GATC	2 cut(s)	295, 369
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNSI	RCATGY	1 cut(s)	351
BstV1I	GCAGC	2 cut(s)	320, 321
Bsu36I	CCTNAGG	1 cut(s)	432
BsuRI	GGCC	1 cut(s)	156
BtsCI	GGATG	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	287
CfoI	GCGC	1 cut(s)	122
Cfr13I	GGNCC	2 cut(s)	155, 277
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	3 cut(s)	103, 348, 367
CviJI	RGCY	6 cut(s)	71, 156, 311, 334, 356, 470
CviKI_1	RGCY	6 cut(s)	71, 156, 311, 334, 356, 470
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	2 cut(s)	9, 432
DpnI	GATC	2 cut(s)	297, 371
DpnII	GATC	2 cut(s)	295, 369
DraIII	CACNNNGTG	1 cut(s)	106
Eam1104I	CTCTTC	4 cut(s)	29, 60, 204, 435
EarI	CTCTTC	4 cut(s)	29, 60, 204, 435
EciI	GGCGGA	1 cut(s)	377
Eco47I	GGWCC	1 cut(s)	277
Eco57I	CTGAAG	2 cut(s)	53, 228
Eco81I	CCTNAGG	1 cut(s)	432
EcoO109I	RGGNCCY	1 cut(s)	155
EcoRI	GAATTC	2 cut(s)	251, 263
FaeI	CATG	3 cut(s)	106, 351, 370
FaiI	YATR	3 cut(s)	104, 349, 368
FalI	AAGNNNNNCTT	2 cut(s)	407, 439
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	3 cut(s)	102, 347, 366
FbaI	TGATCA	1 cut(s)	369
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	309, 335
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	2 cut(s)	309, 335
FspBI	CTAG	1 cut(s)	168
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	2 cut(s)	309, 335
HaeIII	GGCC	1 cut(s)	156
HhaI	GCGC	1 cut(s)	122
Hin1II	CATG	3 cut(s)	106, 351, 370
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	3 cut(s)	243, 382, 394
HphI	GGTGA	1 cut(s)	418
Hpy166II	GTNNAC	2 cut(s)	6, 277
Hpy188I	TCNGA	2 cut(s)	300, 321
Hpy188III	TCNNGA	2 cut(s)	386, 415
Hpy8I	GTNNAC	2 cut(s)	6, 277
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	1 cut(s)	447
HpyCH4IV	ACGT	2 cut(s)	147, 195
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	2 cut(s)	9, 432
HpySE526I	ACGT	2 cut(s)	147, 195
Hsp92II	CATG	3 cut(s)	106, 351, 370
HspAI	GCGC	1 cut(s)	120
Ksp22I	TGATCA	1 cut(s)	369
Kzo9I	GATC	2 cut(s)	295, 369
LmnI	GCTCC	1 cut(s)	331
LpnPI	CCDG	5 cut(s)	44, 293, 323, 338, 444
Lsp1109I	GCAGC	2 cut(s)	320, 321
LweI	GCATC	2 cut(s)	12, 193
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	2 cut(s)	147, 195
MaeIII	GTNAC	1 cut(s)	84
MalI	GATC	2 cut(s)	297, 371
MboI	GATC	2 cut(s)	295, 369
MboII	GAAGA	8 cut(s)	31, 46, 77, 221, 245, 272, 449, 452
MluCI	AATT	2 cut(s)	251, 263
MlyI	GAGTC	2 cut(s)	237, 376
MnlI	CCTC	7 cut(s)	34, 43, 61, 103, 278, 427, 436
MroXI	GAANNNNTTC	2 cut(s)	393, 422
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	2 cut(s)	295, 369
NlaIII	CATG	3 cut(s)	106, 351, 370
NlaIV	GGNNCC	1 cut(s)	157
NmuCI	GTSAC	1 cut(s)	84
NspI	RCATGY	1 cut(s)	351
NspV	TTCGAA	1 cut(s)	451
PciI	ACATGT	1 cut(s)	347
PdmI	GAANNNNTTC	2 cut(s)	393, 422
PfeI	GAWTC	1 cut(s)	394
PkrI	GCNGC	2 cut(s)	310, 336
PleI	GAGTC	2 cut(s)	237, 376
PpsI	GAGTC	2 cut(s)	237, 376
PscI	ACATGT	1 cut(s)	347
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	2 cut(s)	155, 277
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SalI	GTCGAC	1 cut(s)	4
SatI	GCNGC	2 cut(s)	309, 335
Sau3AI	GATC	2 cut(s)	295, 369
Sau96I	GGNCC	2 cut(s)	155, 277
SchI	GAGTC	2 cut(s)	237, 376
SetI	ASST	6 cut(s)	54, 150, 186, 198, 276, 336
SfaNI	GCATC	2 cut(s)	12, 193
SfuI	TTCGAA	1 cut(s)	451
SinI	GGWCC	1 cut(s)	277
SmlI	CTYRAG	2 cut(s)	245, 269
SmoI	CTYRAG	2 cut(s)	245, 269
Sse9I	AATT	2 cut(s)	251, 263
SsiI	CCGC	2 cut(s)	362, 446
SspMI	CTAG	1 cut(s)	168
TaiI	ACGT	2 cut(s)	150, 198
TaqI	TCGA	4 cut(s)	5, 177, 255, 451
TasI	AATT	2 cut(s)	251, 263
TfiI	GAWTC	1 cut(s)	394
TseFI	GTSAC	1 cut(s)	84
TseI	GCWGC	2 cut(s)	308, 334
Tsp45I	GTSAC	1 cut(s)	84
TspGWI	ACGGA	1 cut(s)	60
VpaK11BI	GGWCC	1 cut(s)	277
XapI	RAATTY	2 cut(s)	251, 263
XceI	RCATGY	1 cut(s)	351
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	2 cut(s)	393, 422
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.