Rmu_sc0004101.1_g000052

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004101.1
OG0018370
Physical Location & Seq
Reverse (-)
261446 .. 262478
1033 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004101.1_g000052.1.cds

Sequence Viewer

Length: 639 bp
atggttattctattcaagaactctgagggaaagaccttcgaggtcgcagagtctacatcacttgccccccagacaatcaagaacatgatggaggatcccaacagccccgagattagtatccctcatgtgagaactgcagtcatgctcaaggtgatcgaatacctcaccatgcacgacgagggcaacaattcccgaacaaccctccagaactttggtgactacttcctcgaaaaagttgacaagaccactcttgatctcatcaaggcagcaaaccttctgataattagggcaaatctcaagcctaaggagacattggataaagtgttggattgggcgaggcaacaaagcaatggcagcgctcttccacaattatcatatttacgtggaggaatatggctttctgcggcccttgcatcccagaccatcaagcatatgattgaggatcttgaggatcccatccatgagattactttcctggatatgacaagcgtaatccttgccaaggtgatcgattacctcaacatgcacgagaagcgaaacgcatgtgtcggcactaaggctgttcacaactttgatgccgagttcgtcaaggttgacaagaaacactttttgacctcatcaaggcagcaaactttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

212

Amino Acids

24.02

Weight (kDa)

6.16

Isoelectric Point (pI)

41.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 53
AciI CCGC 1 cut(s) 404
AclWI GGATC 5 cut(s) 89, 102, 446, 450, 459
AfeI AGCGCT 1 cut(s) 358
AfiI CCNNNNNNNGG 2 cut(s) 502, 621
AgsI TTSAA 1 cut(s) 16
AjnI CCWGG 1 cut(s) 474
Alw26I GTCTC 1 cut(s) 302
AlwI GGATC 5 cut(s) 89, 102, 446, 450, 459
Ama87I CYCGRG 1 cut(s) 107
Aor51HI AGCGCT 1 cut(s) 358
AoxI GGCC 1 cut(s) 405
ApeKI GCWGC 3 cut(s) 266, 354, 625
AspLEI GCGC 1 cut(s) 359
AspS9I GGNCC 1 cut(s) 406
AsuHPI GGTGA 4 cut(s) 157, 163, 227, 517
AvaI CYCGRG 1 cut(s) 107
AxyI CCTNAGG 1 cut(s) 303
BamHI GGATCC 2 cut(s) 94, 451
BauI CACGAG 1 cut(s) 527
BbvI GCAGC 2 cut(s) 278, 366
BccI CCATC 3 cut(s) 82, 431, 464
BciT130I CCWGG 1 cut(s) 476
BciVI GTATCC 1 cut(s) 128
BcoDI GTCTC 1 cut(s) 302
BfmI CTRYAG 1 cut(s) 135
BfoI RGCGCY 1 cut(s) 360
BfuI GTATCC 1 cut(s) 128
BisI GCNGC 4 cut(s) 267, 355, 405, 626
BlsI GCNGC 4 cut(s) 268, 356, 406, 627
Bme1390I CCNGG 1 cut(s) 476
BmeT110I CYCGRG 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 406
BmiI GGNNCC 2 cut(s) 96, 453
BmrFI CCNGG 1 cut(s) 476
BmsI GCATC 2 cut(s) 422, 565
BpmI CTGGAG 1 cut(s) 188
BpuEI CTTGAG 3 cut(s) 131, 281, 467
Bsa29I ATCGAT 1 cut(s) 510
BsaAI YACGTR 1 cut(s) 383
BsaBI GATNNNNATC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 501
Bsc4I CCNNNNNNNGG 2 cut(s) 502, 621
Bse21I CCTNAGG 1 cut(s) 303
Bse3DI GCAATG 1 cut(s) 355
Bse8I GATNNNNATC 1 cut(s) 116
BseBI CCWGG 1 cut(s) 476
BseCI ATCGAT 1 cut(s) 510
BseDI CCNNGG 1 cut(s) 501
BseGI GGATG 2 cut(s) 413, 456
BseJI GATNNNNATC 1 cut(s) 116
BseLI CCNNNNNNNGG 2 cut(s) 502, 621
BseMI GCAATG 1 cut(s) 355
BseMII CTCAG 1 cut(s) 15
BseXI GCAGC 2 cut(s) 278, 366
BshFI GGCC 1 cut(s) 407
BshVI ATCGAT 1 cut(s) 510
BsiHKCI CYCGRG 1 cut(s) 107
BslI CCNNNNNNNGG 2 cut(s) 502, 621
BsmAI GTCTC 1 cut(s) 302
BsnI GGCC 1 cut(s) 407
BsoBI CYCGRG 1 cut(s) 107
Bsp143I GATC 6 cut(s) 94, 153, 253, 442, 451, 507
BspACI CCGC 1 cut(s) 404
BspANI GGCC 1 cut(s) 407
BspCNI CTCAG 1 cut(s) 16
BspDI ATCGAT 1 cut(s) 510
BspLI GGNNCC 2 cut(s) 96, 453
BspMAI CTGCAG 1 cut(s) 139
BspPI GGATC 5 cut(s) 89, 102, 446, 450, 459
BspQI GCTCTTC 1 cut(s) 366
BsrDI GCAATG 1 cut(s) 355
BssECI CCNNGG 1 cut(s) 501
BssMI GATC 6 cut(s) 94, 153, 253, 442, 451, 507
BssSI CACGAG 1 cut(s) 527
BssT1I CCWWGG 1 cut(s) 501
Bst2BI CACGAG 1 cut(s) 527
Bst2UI CCWGG 1 cut(s) 476
Bst6I CTCTTC 1 cut(s) 366
BstBAI YACGTR 1 cut(s) 383
BstDEI CTNAG 3 cut(s) 24, 303, 555
BstENI CCTNNNNNAGG 2 cut(s) 500, 619
BstF5I GGATG 2 cut(s) 413, 456
BstH2I RGCGCY 1 cut(s) 360
BstHHI GCGC 1 cut(s) 359
BstKTI GATC 6 cut(s) 97, 156, 256, 445, 454, 510
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 6 cut(s) 94, 153, 253, 442, 451, 507
BstMWI GCNNNNNNNGC 3 cut(s) 354, 410, 532
BstNI CCWGG 1 cut(s) 476
BstNSI RCATGY 2 cut(s) 526, 546
BstSCI CCNGG 1 cut(s) 474
BstSFI CTRYAG 1 cut(s) 135
BstV1I GCAGC 2 cut(s) 278, 366
BstX2I RGATCY 3 cut(s) 94, 442, 451
BstXI CCANNNNNNTGG 1 cut(s) 212
BstYI RGATCY 3 cut(s) 94, 442, 451
Bsu15I ATCGAT 1 cut(s) 510
Bsu36I CCTNAGG 1 cut(s) 303
BsuI GTATCC 1 cut(s) 128
BsuRI GGCC 1 cut(s) 407
BsuTUI ATCGAT 1 cut(s) 510
BtsCI GGATG 2 cut(s) 413, 456
CfoI GCGC 1 cut(s) 359
Cfr13I GGNCC 1 cut(s) 406
ClaI ATCGAT 1 cut(s) 510
CviAII CATG 7 cut(s) 85, 125, 142, 169, 461, 523, 543
CviJI RGCY 5 cut(s) 105, 301, 397, 407, 560
CviKI_1 RGCY 5 cut(s) 105, 301, 397, 407, 560
DdeI CTNAG 3 cut(s) 24, 303, 555
DpnI GATC 6 cut(s) 96, 155, 255, 444, 453, 509
DpnII GATC 6 cut(s) 94, 153, 253, 442, 451, 507
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
Eco130I CCWWGG 1 cut(s) 501
Eco47III AGCGCT 1 cut(s) 358
Eco81I CCTNAGG 1 cut(s) 303
Eco88I CYCGRG 1 cut(s) 107
EcoNI CCTNNNNNAGG 2 cut(s) 500, 619
EcoRII CCWGG 1 cut(s) 474
EcoT14I CCWWGG 1 cut(s) 501
ErhI CCWWGG 1 cut(s) 501
FaeI CATG 7 cut(s) 88, 128, 145, 172, 464, 526, 546
FalI AAGNNNNNCTT 2 cut(s) 590, 622
FatI CATG 7 cut(s) 84, 124, 141, 168, 460, 522, 542
FauNDI CATATG 1 cut(s) 432
FblI GTMKAC 1 cut(s) 53
Fnu4HI GCNGC 4 cut(s) 267, 355, 405, 626
FokI GGATG 2 cut(s) 400, 443
Fsp4HI GCNGC 4 cut(s) 267, 355, 405, 626
GlaI GCGC 1 cut(s) 358
GluI GCNGC 4 cut(s) 267, 355, 405, 626
GsuI CTGGAG 1 cut(s) 188
HaeII RGCGCY 1 cut(s) 360
HaeIII GGCC 1 cut(s) 407
HhaI GCGC 1 cut(s) 359
Hin1II CATG 7 cut(s) 88, 128, 145, 172, 464, 526, 546
Hin6I GCGC 1 cut(s) 357
HinP1I GCGC 1 cut(s) 357
HincII GTYRAC 2 cut(s) 238, 595
HindII GTYRAC 2 cut(s) 238, 595
HinfI GANTC 1 cut(s) 50
HphI GGTGA 4 cut(s) 157, 163, 227, 517
Hpy166II GTNNAC 4 cut(s) 54, 238, 565, 595
Hpy188I TCNGA 2 cut(s) 25, 279
Hpy188III TCNNGA 6 cut(s) 16, 79, 192, 205, 251, 446
Hpy8I GTNNAC 4 cut(s) 54, 238, 565, 595
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 2 cut(s) 46, 284
HpyCH4IV ACGT 1 cut(s) 382
HpyCH4V TGCA 4 cut(s) 137, 172, 413, 526
HpyF10VI GCNNNNNNNGC 3 cut(s) 354, 410, 532
HpyF3I CTNAG 3 cut(s) 24, 303, 555
HpySE526I ACGT 1 cut(s) 382
Hsp92II CATG 7 cut(s) 88, 128, 145, 172, 464, 526, 546
HspAI GCGC 1 cut(s) 357
Kzo9I GATC 6 cut(s) 94, 153, 253, 442, 451, 507
LguI GCTCTTC 1 cut(s) 366
LpnPI CCDG 5 cut(s) 83, 218, 431, 461, 488
Lsp1109I GCAGC 2 cut(s) 278, 366
LweI GCATC 2 cut(s) 422, 565
MaeII ACGT 1 cut(s) 382
MaeIII GTNAC 1 cut(s) 215
MalI GATC 6 cut(s) 96, 155, 255, 444, 453, 509
MboI GATC 6 cut(s) 94, 153, 253, 442, 451, 507
MboII GAAGA 1 cut(s) 353
MflI RGATCY 3 cut(s) 94, 442, 451
MluCI AATT 3 cut(s) 187, 282, 368
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 1 cut(s) 306
MspR9I CCNGG 1 cut(s) 476
MvaI CCWGG 1 cut(s) 476
MwoI GCNNNNNNNGC 3 cut(s) 354, 410, 532
NdeI CATATG 1 cut(s) 432
NdeII GATC 6 cut(s) 94, 153, 253, 442, 451, 507
NlaIII CATG 7 cut(s) 88, 128, 145, 172, 464, 526, 546
NlaIV GGNNCC 2 cut(s) 96, 453
NmeAIII GCCGAG 1 cut(s) 604
NmuCI GTSAC 1 cut(s) 215
NspI RCATGY 2 cut(s) 526, 546
PciSI GCTCTTC 1 cut(s) 366
PfoI TCCNGGA 1 cut(s) 474
PkrI GCNGC 4 cut(s) 268, 356, 406, 627
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
Ppu21I YACGTR 1 cut(s) 383
Psp6I CCWGG 1 cut(s) 474
PspGI CCWGG 1 cut(s) 474
PspN4I GGNNCC 2 cut(s) 96, 453
PspPI GGNCC 1 cut(s) 406
PstI CTGCAG 1 cut(s) 139
PsuI RGATCY 3 cut(s) 94, 442, 451
SapI GCTCTTC 1 cut(s) 366
SatI GCNGC 4 cut(s) 267, 355, 405, 626
Sau3AI GATC 6 cut(s) 94, 153, 253, 442, 451, 507
Sau96I GGNCC 1 cut(s) 406
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 1 cut(s) 476
SfaNI GCATC 2 cut(s) 422, 565
SfcI CTRYAG 1 cut(s) 135
SmlI CTYRAG 3 cut(s) 146, 296, 446
SmoI CTYRAG 3 cut(s) 146, 296, 446
Sse9I AATT 3 cut(s) 187, 282, 368
SsiI CCGC 1 cut(s) 404
StyD4I CCNGG 1 cut(s) 474
StyI CCWWGG 1 cut(s) 501
TaiI ACGT 1 cut(s) 385
TaqI TCGA 4 cut(s) 39, 156, 228, 510
TasI AATT 3 cut(s) 187, 282, 368
TauI GCSGC 1 cut(s) 407
TseFI GTSAC 1 cut(s) 215
TseI GCWGC 3 cut(s) 266, 354, 625
Tsp45I GTSAC 1 cut(s) 215
XagI CCTNNNNNAGG 2 cut(s) 500, 619
XceI RCATGY 2 cut(s) 526, 546
XmiI GTMKAC 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.