Rmu_sc0006045.1_g000003

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006045.1
OG0018370
Physical Location & Seq
Forward (+)
19953 .. 21883
1931 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006045.1_g000003.1.cds

Sequence Viewer

Length: 711 bp
atggttgttctattcaagagctctgagggaaagaccttcgaggtcgtagagtctacagcacttgccccccagacaaaaaacatgatggaggatcccagcagccccgagattagtatccctcttgtgagaactgtagtcatgcgcaaggtgattgaatacctcaccatgcacgatgagggcaacaaggtttctcgaacaaccctccagaactttggtgactacttcctcgaaaacgtcgacaagaccactcttgatctcatcaaggcagcaaaccttctgataattagggcaaatctcaagcctaaagagacactggataaagtgttggattgggcgaggcaagaaagcaatggcagcgctcttccacaattatcatatttacgtggaggaacagggctttctgcggcccttgcatcccagaccatcaagcatatgattgaggatcttgaggatcacatccatgagattactttcccggatatgacaagcgtaatccttgccaaggtgatcgattacctcaacatgcacgagaagcggaacgctgcttgtgtcggcactaaggctgtccataactttgatgccgagttcgtcaaggcttatatttccatgacaaaggagttcaaggaagaagttagagcacaagaggtgccaccacatcatctccatgacaaagtttccatgatcaaccatttcatcatccttcacttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

236

Amino Acids

26.67

Weight (kDa)

5.99

Isoelectric Point (pI)

42.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 143
AccB1I GGYRCC 1 cut(s) 646
AccI GTMKAC 2 cut(s) 53, 237
AciI CCGC 2 cut(s) 404, 535
AclWI GGATC 4 cut(s) 86, 99, 450, 459
AfeI AGCGCT 1 cut(s) 358
AfiI CCNNNNNNNGG 1 cut(s) 502
AgsI TTSAA 3 cut(s) 16, 155, 622
AluBI AGCT 1 cut(s) 21
AluI AGCT 1 cut(s) 21
Alw21I GWGCWC 2 cut(s) 23, 640
Alw26I GTCTC 1 cut(s) 302
AlwI GGATC 4 cut(s) 86, 99, 450, 459
Ama87I CYCGRG 1 cut(s) 104
Aor51HI AGCGCT 1 cut(s) 358
AoxI GGCC 1 cut(s) 405
ApeKI GCWGC 4 cut(s) 99, 266, 354, 542
AspLEI GCGC 2 cut(s) 144, 359
AspS9I GGNCC 1 cut(s) 406
AsuC2I CCSGG 1 cut(s) 476
AsuHPI GGTGA 4 cut(s) 154, 160, 227, 517
AvaI CYCGRG 1 cut(s) 104
BamHI GGATCC 1 cut(s) 91
BanI GGYRCC 1 cut(s) 646
BanII GRGCYC 1 cut(s) 23
BauI CACGAG 1 cut(s) 527
Bbv12I GWGCWC 2 cut(s) 23, 640
BbvI GCAGC 4 cut(s) 111, 278, 366, 529
BccI CCATC 2 cut(s) 79, 431
BciVI GTATCC 1 cut(s) 125
BclI TGATCA 1 cut(s) 681
BcnI CCSGG 1 cut(s) 476
BcoDI GTCTC 1 cut(s) 302
BfmI CTRYAG 2 cut(s) 54, 132
BfoI RGCGCY 1 cut(s) 360
BfuI GTATCC 1 cut(s) 125
BisI GCNGC 5 cut(s) 100, 267, 355, 405, 543
BlsI GCNGC 5 cut(s) 101, 268, 356, 406, 544
Bme1390I CCNGG 1 cut(s) 476
BmeT110I CYCGRG 1 cut(s) 104
BmgT120I GGNCC 1 cut(s) 406
BmiI GGNNCC 2 cut(s) 93, 648
BmrFI CCNGG 1 cut(s) 476
BmsI GCATC 2 cut(s) 422, 568
BpmI CTGGAG 1 cut(s) 188
BpuEI CTTGAG 2 cut(s) 281, 467
BpuMI CCSGG 1 cut(s) 476
Bsa29I ATCGAT 1 cut(s) 510
BsaAI YACGTR 1 cut(s) 383
BsaBI GATNNNNATC 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 501
BsaXI ACNNNNNCTCC 2 cut(s) 645, 675
Bsc4I CCNNNNNNNGG 1 cut(s) 502
Bse1I ACTGG 1 cut(s) 318
Bse3DI GCAATG 1 cut(s) 355
Bse8I GATNNNNATC 1 cut(s) 113
BseCI ATCGAT 1 cut(s) 510
BseDI CCNNGG 1 cut(s) 501
BseGI GGATG 3 cut(s) 413, 456, 696
BseJI GATNNNNATC 1 cut(s) 113
BseLI CCNNNNNNNGG 1 cut(s) 502
BseMI GCAATG 1 cut(s) 355
BseMII CTCAG 1 cut(s) 15
BseNI ACTGG 1 cut(s) 318
BseXI GCAGC 4 cut(s) 111, 278, 366, 529
BseYI CCCAGC 1 cut(s) 95
BshFI GGCC 1 cut(s) 407
BshNI GGYRCC 1 cut(s) 646
BshVI ATCGAT 1 cut(s) 510
BsiHKAI GWGCWC 2 cut(s) 23, 640
BsiHKCI CYCGRG 1 cut(s) 104
BsiSI CCGG 1 cut(s) 476
BslI CCNNNNNNNGG 1 cut(s) 502
BsmAI GTCTC 1 cut(s) 302
BsnI GGCC 1 cut(s) 407
BsoBI CYCGRG 1 cut(s) 104
Bsp1286I GDGCHC 2 cut(s) 23, 640
Bsp143I GATC 6 cut(s) 91, 253, 442, 451, 507, 681
BspACI CCGC 2 cut(s) 404, 535
BspANI GGCC 1 cut(s) 407
BspCNI CTCAG 1 cut(s) 16
BspDI ATCGAT 1 cut(s) 510
BspLI GGNNCC 2 cut(s) 93, 648
BspPI GGATC 4 cut(s) 86, 99, 450, 459
BspQI GCTCTTC 1 cut(s) 366
BspT107I GGYRCC 1 cut(s) 646
BsrDI GCAATG 1 cut(s) 355
BsrI ACTGG 1 cut(s) 318
BssECI CCNNGG 1 cut(s) 501
BssMI GATC 6 cut(s) 91, 253, 442, 451, 507, 681
BssSI CACGAG 1 cut(s) 527
BssT1I CCWWGG 1 cut(s) 501
Bst2BI CACGAG 1 cut(s) 527
Bst4CI ACNGT 1 cut(s) 133
Bst6I CTCTTC 1 cut(s) 366
BstBAI YACGTR 1 cut(s) 383
BstDEI CTNAG 2 cut(s) 24, 558
BstENI CCTNNNNNAGG 1 cut(s) 500
BstF5I GGATG 3 cut(s) 413, 456, 696
BstH2I RGCGCY 1 cut(s) 360
BstHHI GCGC 2 cut(s) 144, 359
BstKTI GATC 6 cut(s) 94, 256, 445, 454, 510, 684
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 6 cut(s) 91, 253, 442, 451, 507, 681
BstMWI GCNNNNNNNGC 3 cut(s) 354, 410, 532
BstNSI RCATGY 1 cut(s) 526
BstSCI CCNGG 1 cut(s) 474
BstSFI CTRYAG 2 cut(s) 54, 132
BstV1I GCAGC 4 cut(s) 111, 278, 366, 529
BstX2I RGATCY 2 cut(s) 91, 442
BstXI CCANNNNNNTGG 1 cut(s) 212
BstYI RGATCY 2 cut(s) 91, 442
Bsu15I ATCGAT 1 cut(s) 510
BsuI GTATCC 1 cut(s) 125
BsuRI GGCC 1 cut(s) 407
BsuTUI ATCGAT 1 cut(s) 510
BtsCI GGATG 3 cut(s) 413, 456, 696
BtsIMutI CAGTG 1 cut(s) 311
CfoI GCGC 2 cut(s) 144, 359
Cfr13I GGNCC 1 cut(s) 406
ClaI ATCGAT 1 cut(s) 510
CviAII CATG 8 cut(s) 82, 139, 166, 461, 523, 607, 665, 679
CviJI RGCY 7 cut(s) 21, 102, 301, 397, 407, 563, 596
CviKI_1 RGCY 7 cut(s) 21, 102, 301, 397, 407, 563, 596
DdeI CTNAG 2 cut(s) 24, 558
DpnI GATC 6 cut(s) 93, 255, 444, 453, 509, 683
DpnII GATC 6 cut(s) 91, 253, 442, 451, 507, 681
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
Ecl136II GAGCTC 1 cut(s) 21
Eco130I CCWWGG 1 cut(s) 501
Eco24I GRGCYC 1 cut(s) 23
Eco47III AGCGCT 1 cut(s) 358
Eco53kI GAGCTC 1 cut(s) 21
Eco88I CYCGRG 1 cut(s) 104
EcoICRI GAGCTC 1 cut(s) 21
EcoNI CCTNNNNNAGG 1 cut(s) 500
EcoT14I CCWWGG 1 cut(s) 501
EcoT38I GRGCYC 1 cut(s) 23
ErhI CCWWGG 1 cut(s) 501
FaeI CATG 8 cut(s) 85, 142, 169, 464, 526, 610, 668, 682
FatI CATG 8 cut(s) 81, 138, 165, 460, 522, 606, 664, 678
FauNDI CATATG 1 cut(s) 432
FbaI TGATCA 1 cut(s) 681
FblI GTMKAC 2 cut(s) 53, 237
Fnu4HI GCNGC 5 cut(s) 100, 267, 355, 405, 543
FokI GGATG 3 cut(s) 400, 443, 683
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 5 cut(s) 100, 267, 355, 405, 543
FspI TGCGCA 1 cut(s) 143
GlaI GCGC 2 cut(s) 143, 358
GluI GCNGC 5 cut(s) 100, 267, 355, 405, 543
GsaI CCCAGC 1 cut(s) 99
GsuI CTGGAG 1 cut(s) 188
HaeII RGCGCY 1 cut(s) 360
HaeIII GGCC 1 cut(s) 407
HapII CCGG 1 cut(s) 476
HhaI GCGC 2 cut(s) 144, 359
Hin1II CATG 8 cut(s) 85, 142, 169, 464, 526, 610, 668, 682
Hin6I GCGC 2 cut(s) 142, 357
HinP1I GCGC 2 cut(s) 142, 357
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HinfI GANTC 1 cut(s) 50
HpaII CCGG 1 cut(s) 476
HphI GGTGA 4 cut(s) 154, 160, 227, 517
Hpy166II GTNNAC 2 cut(s) 54, 238
Hpy188I TCNGA 2 cut(s) 25, 279
Hpy188III TCNNGA 5 cut(s) 16, 192, 205, 251, 446
Hpy8I GTNNAC 2 cut(s) 54, 238
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 3 cut(s) 46, 284, 710
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4IV ACGT 2 cut(s) 234, 382
HpyCH4V TGCA 3 cut(s) 169, 413, 526
HpyF10VI GCNNNNNNNGC 3 cut(s) 354, 410, 532
HpyF3I CTNAG 2 cut(s) 24, 558
HpySE526I ACGT 2 cut(s) 234, 382
Hsp92II CATG 8 cut(s) 85, 142, 169, 464, 526, 610, 668, 682
HspAI GCGC 2 cut(s) 142, 357
Ksp22I TGATCA 1 cut(s) 681
Kzo9I GATC 6 cut(s) 91, 253, 442, 451, 507, 681
LguI GCTCTTC 1 cut(s) 366
LpnPI CCDG 7 cut(s) 83, 109, 218, 299, 378, 431, 489
Lsp1109I GCAGC 4 cut(s) 111, 278, 366, 529
LweI GCATC 2 cut(s) 422, 568
MaeII ACGT 2 cut(s) 234, 382
MaeIII GTNAC 1 cut(s) 215
MalI GATC 6 cut(s) 93, 255, 444, 453, 509, 683
MboI GATC 6 cut(s) 91, 253, 442, 451, 507, 681
MboII GAAGA 2 cut(s) 353, 638
MflI RGATCY 2 cut(s) 91, 442
MhlI GDGCHC 2 cut(s) 23, 640
MluCI AATT 2 cut(s) 282, 368
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 1 cut(s) 306
MslI CAYNNNNRTG 2 cut(s) 459, 663
MspI CCGG 1 cut(s) 476
MspR9I CCNGG 1 cut(s) 476
MwoI GCNNNNNNNGC 3 cut(s) 354, 410, 532
NciI CCSGG 1 cut(s) 476
NdeI CATATG 1 cut(s) 432
NdeII GATC 6 cut(s) 91, 253, 442, 451, 507, 681
NlaIII CATG 8 cut(s) 85, 142, 169, 464, 526, 610, 668, 682
NlaIV GGNNCC 2 cut(s) 93, 648
NmeAIII GCCGAG 1 cut(s) 607
NmuCI GTSAC 1 cut(s) 215
NsbI TGCGCA 1 cut(s) 143
NspI RCATGY 1 cut(s) 526
PciSI GCTCTTC 1 cut(s) 366
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PfoI TCCNGGA 1 cut(s) 474
PkrI GCNGC 5 cut(s) 101, 268, 356, 406, 544
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
Ppu21I YACGTR 1 cut(s) 383
Psp124BI GAGCTC 1 cut(s) 23
PspFI CCCAGC 1 cut(s) 95
PspN4I GGNNCC 2 cut(s) 93, 648
PspPI GGNCC 1 cut(s) 406
PsuI RGATCY 2 cut(s) 91, 442
RseI CAYNNNNRTG 2 cut(s) 459, 663
SacI GAGCTC 1 cut(s) 23
SalI GTCGAC 1 cut(s) 236
SapI GCTCTTC 1 cut(s) 366
SatI GCNGC 5 cut(s) 100, 267, 355, 405, 543
Sau3AI GATC 6 cut(s) 91, 253, 442, 451, 507, 681
Sau96I GGNCC 1 cut(s) 406
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 1 cut(s) 476
SduI GDGCHC 2 cut(s) 23, 640
SfaNI GCATC 2 cut(s) 422, 568
SfcI CTRYAG 2 cut(s) 54, 132
SmiMI CAYNNNNRTG 2 cut(s) 459, 663
SmlI CTYRAG 2 cut(s) 296, 446
SmoI CTYRAG 2 cut(s) 296, 446
Sse9I AATT 2 cut(s) 282, 368
SsiI CCGC 2 cut(s) 404, 535
SstI GAGCTC 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 474
StyI CCWWGG 1 cut(s) 501
TaaI ACNGT 1 cut(s) 133
TaiI ACGT 2 cut(s) 237, 385
TaqI TCGA 5 cut(s) 39, 193, 228, 237, 510
TasI AATT 2 cut(s) 282, 368
TauI GCSGC 1 cut(s) 407
TscAI CASTG 1 cut(s) 318
TseFI GTSAC 1 cut(s) 215
TseI GCWGC 4 cut(s) 99, 266, 354, 542
Tsp45I GTSAC 1 cut(s) 215
TspDTI ATGAA 1 cut(s) 682
TspRI CASTG 1 cut(s) 318
XagI CCTNNNNNAGG 1 cut(s) 500
XceI RCATGY 1 cut(s) 526
XmiI GTMKAC 2 cut(s) 53, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.