Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0018370

Physical Location & Seq

Genomic Coordinates Forward (+)

9832566 .. 9833184

Gene Structure 619 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00007680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGATTGATCAGGATATCTCTCTATCATTTTCCTCTATAGGCATCAAGGTTGAAGAGTCTGCTGCCCTTGCATCCCAGACCATCAAGCACATGATCGAGGATCTTGAGGATCCCATCCATGAGATTACTATTTCCCAAGTGACAAGCGCAATCCTTGCCAAGGTGGTCGATCACCTCAACATGCACGACACAGGCGGCATTAATAGTGTAAAAGGCATGATGGATATCACACTCGAGGCTGTGGCTGGGTTCATTGGAAGGATGAGTATGGATGAACTACGAGAGTATTTCAACGTCAAGGAACAACTCAGGGATGAAGAGGATAGTACTTGGAAATATGGTTATATTGATTTTACACCAGAGCTGAAGCCTATGGAGTCACTGCAAAAATTCTTGTATCCGGTGAGGGCAAAAAACAGTGGCAGCTGGGCTCTCTTCCTCAACGTGATATTAGGATCAGGGGCATTGCGAACCCCATACATATTGACATTTATAGAACTATGCATCATGAGGTTATCCTCAGCAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0019005 GO:0019538 GO:0019941 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0051603 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

176

Amino Acids

19.77

Weight (kDa)

4.78

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	15 - 62	7.9e-12	Skp1 family, tetramerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018370)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05250 FvH4_5g29420
rosa_multiflora	Rmu_sc0004101.1_g000052 Rmu_sc0006045.1_g000003
rosa_roxburghii	Rroxscaffold_1G00007680 Rroxscaffold_1G00023770
rosa_samantha	Rh5BG502900 Rh5CG526000 Rh5DG395400 Rh5DG395500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	195
AclWI	GGATC	4 cut(s)	104, 108, 117, 463
AcsI	RAATTY	1 cut(s)	389
AcuI	CTGAAG	1 cut(s)	386
AfaI	GTAC	1 cut(s)	328
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	2 cut(s)	53, 292
AluBI	AGCT	2 cut(s)	364, 426
AluI	AGCT	2 cut(s)	364, 426
AlwI	GGATC	4 cut(s)	104, 108, 117, 463
Ama87I	CYCGRG	1 cut(s)	233
ApeKI	GCWGC	2 cut(s)	62, 423
ApoI	RAATTY	1 cut(s)	389
AseI	ATTAAT	1 cut(s)	201
AspLEI	GCGC	1 cut(s)	149
AsuHPI	GGTGA	2 cut(s)	164, 415
AvaI	CYCGRG	1 cut(s)	233
BamHI	GGATCC	1 cut(s)	109
BanII	GRGCYC	1 cut(s)	433
BbvCI	CCTCAGC	1 cut(s)	520
BbvI	GCAGC	2 cut(s)	49, 435
BccI	CCATC	3 cut(s)	89, 122, 214
BciVI	GTATCC	1 cut(s)	408
BclI	TGATCA	1 cut(s)	7
BfmI	CTRYAG	1 cut(s)	36
BfuI	GTATCC	1 cut(s)	408
BisI	GCNGC	3 cut(s)	63, 196, 424
BlsI	GCNGC	3 cut(s)	64, 197, 425
BmcAI	AGTACT	1 cut(s)	328
BmeT110I	CYCGRG	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	111
BmsI	GCATC	3 cut(s)	51, 80, 513
Bpu10I	CCTNAGC	1 cut(s)	520
BpuEI	CTTGAG	1 cut(s)	125
BsaBI	GATNNNNATC	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	159
BsaWI	WCCGGW	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse3DI	GCAATG	2 cut(s)	464, 531
Bse8I	GATNNNNATC	1 cut(s)	224
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	5 cut(s)	71, 114, 267, 277, 319
BseJI	GATNNNNATC	1 cut(s)	224
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMI	GCAATG	2 cut(s)	464, 531
BseMII	CTCAG	1 cut(s)	322
BseXI	GCAGC	2 cut(s)	49, 435
BseYI	CCCAGC	2 cut(s)	245, 426
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	1 cut(s)	401
BslI	CCNNNNNNNGG	1 cut(s)	160
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	433
Bsp143I	GATC	6 cut(s)	7, 93, 100, 109, 169, 455
BspACI	CCGC	1 cut(s)	195
BspCNI	CTCAG	1 cut(s)	321
BspHI	TCATGA	1 cut(s)	507
BspLI	GGNNCC	1 cut(s)	111
BspPI	GGATC	4 cut(s)	104, 108, 117, 463
BsrDI	GCAATG	2 cut(s)	464, 531
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	6 cut(s)	7, 93, 100, 109, 169, 455
BssT1I	CCWWGG	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	419
Bst6I	CTCTTC	3 cut(s)	48, 312, 440
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstDEI	CTNAG	2 cut(s)	308, 520
BstENI	CCTNNNNNAGG	1 cut(s)	158
BstF5I	GGATG	5 cut(s)	71, 114, 267, 277, 319
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	6 cut(s)	10, 96, 103, 112, 172, 458
BstMBI	GATC	6 cut(s)	7, 93, 100, 109, 169, 455
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 155
BstNSI	RCATGY	1 cut(s)	184
BstSFI	CTRYAG	1 cut(s)	36
BstV1I	GCAGC	2 cut(s)	49, 435
BstX2I	RGATCY	2 cut(s)	100, 109
BstYI	RGATCY	2 cut(s)	100, 109
BsuI	GTATCC	1 cut(s)	408
BtsCI	GGATG	5 cut(s)	71, 114, 267, 277, 319
BtsI	GCAGTG	1 cut(s)	380
BtsIMutI	CAGTG	2 cut(s)	380, 424
CciI	TCATGA	1 cut(s)	507
CfoI	GCGC	1 cut(s)	149
Csp6I	GTAC	1 cut(s)	327
CviAII	CATG	5 cut(s)	91, 119, 181, 217, 508
CviJI	RGCY	6 cut(s)	239, 245, 364, 370, 426, 431
CviKI_1	RGCY	6 cut(s)	239, 245, 364, 370, 426, 431
CviQI	GTAC	1 cut(s)	327
DdeI	CTNAG	2 cut(s)	308, 520
DpnI	GATC	6 cut(s)	9, 95, 102, 111, 171, 457
DpnII	GATC	6 cut(s)	7, 93, 100, 109, 169, 455
Eam1104I	CTCTTC	3 cut(s)	48, 312, 440
EarI	CTCTTC	3 cut(s)	48, 312, 440
Eco130I	CCWWGG	1 cut(s)	159
Eco24I	GRGCYC	1 cut(s)	433
Eco32I	GATATC	2 cut(s)	16, 226
Eco57I	CTGAAG	1 cut(s)	386
Eco88I	CYCGRG	1 cut(s)	233
EcoNI	CCTNNNNNAGG	1 cut(s)	158
EcoRV	GATATC	2 cut(s)	16, 226
EcoT14I	CCWWGG	1 cut(s)	159
EcoT22I	ATGCAT	1 cut(s)	506
EcoT38I	GRGCYC	1 cut(s)	433
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	5 cut(s)	94, 122, 184, 220, 511
FatI	CATG	5 cut(s)	90, 118, 180, 216, 507
FbaI	TGATCA	1 cut(s)	7
Fnu4HI	GCNGC	3 cut(s)	63, 196, 424
FokI	GGATG	5 cut(s)	58, 101, 274, 284, 326
FriOI	GRGCYC	1 cut(s)	433
Fsp4HI	GCNGC	3 cut(s)	63, 196, 424
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	3 cut(s)	63, 196, 424
GsaI	CCCAGC	2 cut(s)	249, 430
HapII	CCGG	1 cut(s)	401
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	5 cut(s)	94, 122, 184, 220, 511
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HinfI	GANTC	2 cut(s)	56, 377
HpaII	CCGG	1 cut(s)	401
HphI	GGTGA	2 cut(s)	164, 415
Hpy188III	TCNNGA	3 cut(s)	11, 104, 508
HpyAV	CCTTC	1 cut(s)	252
HpyCH4III	ACNGT	1 cut(s)	419
HpyCH4IV	ACGT	2 cut(s)	294, 444
HpyCH4V	TGCA	4 cut(s)	71, 184, 385, 504
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 155
HpyF3I	CTNAG	2 cut(s)	308, 520
HpySE526I	ACGT	2 cut(s)	294, 444
Hsp92II	CATG	5 cut(s)	94, 122, 184, 220, 511
HspAI	GCGC	1 cut(s)	147
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	6 cut(s)	7, 93, 100, 109, 169, 455
LpnPI	CCDG	8 cut(s)	89, 177, 231, 295, 372, 412, 414, 444
Lsp1109I	GCAGC	2 cut(s)	49, 435
LweI	GCATC	3 cut(s)	51, 80, 513
MaeII	ACGT	2 cut(s)	294, 444
MaeIII	GTNAC	2 cut(s)	139, 378
MalI	GATC	6 cut(s)	9, 95, 102, 111, 171, 457
MboI	GATC	6 cut(s)	7, 93, 100, 109, 169, 455
MboII	GAAGA	3 cut(s)	65, 329, 427
MflI	RGATCY	2 cut(s)	100, 109
MhlI	GDGCHC	1 cut(s)	433
MluCI	AATT	1 cut(s)	389
MlyI	GAGTC	2 cut(s)	65, 386
Mph1103I	ATGCAT	1 cut(s)	506
MseI	TTAA	1 cut(s)	201
MspA1I	CMGCKG	1 cut(s)	426
MspI	CCGG	1 cut(s)	401
MwoI	GCNNNNNNNGC	2 cut(s)	68, 155
NdeII	GATC	6 cut(s)	7, 93, 100, 109, 169, 455
NlaIII	CATG	5 cut(s)	94, 122, 184, 220, 511
NlaIV	GGNNCC	1 cut(s)	111
NmuCI	GTSAC	2 cut(s)	139, 378
NsiI	ATGCAT	1 cut(s)	506
NspI	RCATGY	1 cut(s)	184
PaeR7I	CTCGAG	1 cut(s)	233
PagI	TCATGA	1 cut(s)	507
PkrI	GCNGC	3 cut(s)	64, 197, 425
PleI	GAGTC	2 cut(s)	64, 385
PpsI	GAGTC	2 cut(s)	64, 385
PshBI	ATTAAT	1 cut(s)	201
PspFI	CCCAGC	2 cut(s)	245, 426
PspN4I	GGNNCC	1 cut(s)	111
PspXI	VCTCGAGB	1 cut(s)	233
PsuI	RGATCY	2 cut(s)	100, 109
PvuII	CAGCTG	1 cut(s)	426
RsaI	GTAC	1 cut(s)	328
RsaNI	GTAC	1 cut(s)	327
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	3 cut(s)	63, 196, 424
Sau3AI	GATC	6 cut(s)	7, 93, 100, 109, 169, 455
ScaI	AGTACT	1 cut(s)	328
SchI	GAGTC	2 cut(s)	65, 386
SduI	GDGCHC	1 cut(s)	433
SetI	ASST	8 cut(s)	51, 165, 177, 297, 366, 428, 447, 515
SfaNI	GCATC	3 cut(s)	51, 80, 513
SfcI	CTRYAG	1 cut(s)	36
Sfr274I	CTCGAG	1 cut(s)	233
SlaI	CTCGAG	1 cut(s)	233
SmlI	CTYRAG	2 cut(s)	104, 233
SmoI	CTYRAG	2 cut(s)	104, 233
Sse9I	AATT	1 cut(s)	389
SsiI	CCGC	1 cut(s)	195
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	419
TaiI	ACGT	2 cut(s)	297, 447
TaqI	TCGA	3 cut(s)	96, 168, 234
TasI	AATT	1 cut(s)	389
TatI	WGTACW	1 cut(s)	326
TauI	GCSGC	1 cut(s)	198
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	2 cut(s)	387, 424
TseFI	GTSAC	2 cut(s)	139, 378
TseI	GCWGC	2 cut(s)	62, 423
Tsp45I	GTSAC	2 cut(s)	139, 378
TspDTI	ATGAA	3 cut(s)	241, 288, 330
TspRI	CASTG	2 cut(s)	387, 424
VspI	ATTAAT	1 cut(s)	201
XagI	CCTNNNNNAGG	1 cut(s)	158
XapI	RAATTY	1 cut(s)	389
XceI	RCATGY	1 cut(s)	184
XhoI	CTCGAG	1 cut(s)	233
ZrmI	AGTACT	1 cut(s)	328
Zsp2I	ATGCAT	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.