Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006295

Physical Location & Seq

Genomic Coordinates Forward (+)

4912564 .. 4917675

Gene Structure 5112 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g05930.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGCTGTTGAGTATTCCAGAGATTTTGCGAAGGAGCCTGTTTTGGTCTCTGGGGATGAGAAGGACTGGAAATCTTGTTCTGTCGGATGCCAGTTTGGAGACAATTCTGGTAGAAAACCTGATGCTGCATTTGGTTTTGGTCATCAAGATGGGACATCCAGTGTTCTCCGATCCATGGAATCAGCTCAATACTACGCAGAGAACAATATTGATAATGCAAGACGGTGGGAAGGGTTATAATATTGTTATGACTACTAGTCTCTCATCGGATGTTCCTGTTGGATATTTTTCTTGGGCCGAGTACGACATCATGGCTCCTATCCTGCCTAAGACTGAGAAGGCCCTTGCAGCTGCATTTATTTCCAACTGTGGTGCTCGCAACTTCCGCTTACAGGCTCTTGAAGCTCTTGAAAAGACTAACATCACGATAGATTCTTATGGTGGTTGCCACAGGAACCGTGATGGAAAAGTGGACAAAGTTCAAACTCTGAAGCGCTATAAGTTCAGTTTGGCGTTTGAGAATTCCAATGAGGAGGATTATGTTACTGAGAAGTACTTCCAATCTCTAGTTGCTGGAACTATACCTGTAGTTGTCGGTCCTCCAAATATTGAAGAGTTTTCTCCTGGTCCTGGTTCAATTTTATTTATAAAGGAGCTAAGTGATGTTGAGTCAGTAGCCAAAACCATGAAAAAACTTGCAGATAATCCTGAAGCATATAATCAGTCACTGAGATGGAAGTATGAGGGCCCATCTGATTCTTTCAAGGCCCTTGTGGACATGGCAGCAGTACATTCATCATGCCGTCTTTGCATTCACTTGGCCACAATGATTCGAGAGAAAGAAGAAAGCAGCCTAGAGTTCAAAAGACGACCTTGTAAGTGCACCAGAGGTTCAGGAGTTGTGTATCACTTATATTTGAGAGAAAGAGGCAGATTTGAGATGGAATCCATTTACATAAGGTCGAGCAATCTGACTCTTGAGGCCTTTGAGTCTTTGGTGCTCACAAAGTTCCAATCGCAGAAACATGTGCCCATTTGGAAAGAGGAAAGACCTGAAGTCTTGAGAGGAGGAGACAACTTTAAAGTCTATAGAATATATCCTGTTGGTTTGACACAGAGGCAGGCTTTATATACCTTCAGATTTAAAGGGGATGCTGATTTTAGAAGTCACGTAGAAAGCAACCCGTGTGCGAAGTTTGAAGTCATATTCGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005996 GO:0006004 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008417 GO:0009056 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016052 GO:0016740 GO:0016757 GO:0016758 GO:0018392 GO:0019317 GO:0019318 GO:0019320 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036065 GO:0036211 GO:0042354 GO:0042355 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046365 GO:0046920 GO:0070085 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:0140103 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00513 ko01100 map00513 map01100

Pfam Domains

Protein Families

Glyco_transf_10

Protein Analysis

405

Amino Acids

46.0

Weight (kDa)

8.52

Isoelectric Point (pI)

46.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_10	PF00852	216 - 382	4.6e-32	Glycosyltransferase family 10 (fucosyltransferase) C-term

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49710 AT3G19280
fragaria_vesca	FvH4_2g05930 FvH4_2g05930
malus_domestica	MD05G1081600.v1.1 MD10G1094900.v1.1
prunus_persica	Prupe.3G008400_v2.0.a1 Prupe.8G126200_v2.0.a1 Prupe.8G126200_v2.0.a1 Prupe.8G126200_v2.0.a1 Prupe.8G126200_v2.0.a1 Prupe.8G126200_v2.0.a1 Prupe.8G126200_v2.0.a1 Prupe.8G126200_v2.0.a1
pyrus_communis	pycom05g07640 pycom12641g00120
rosa_chinensis	RchiOBHm_Chr6g0257471
rosa_laevigata	RLG00000014701
rosa_multiflora	Rmu_sc0003301.1_g000019
rosa_roxburghii	Rroxscaffold_7G00208800
rosa_rugosa	Rorug05G0571600 Rorug05G0571600
rosa_samantha	Rh6AG089500 Rh6BG081000 Rh6CG077800 Rh6DG073400
rosa_wichuraiana	Rw6G007820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	237, 647
AciI	CCGC	1 cut(s)	385
AclWI	GGATC	1 cut(s)	164
AcoI	YGGCCR	1 cut(s)	819
AcsI	RAATTY	1 cut(s)	520
AcuI	CTGAAG	4 cut(s)	509, 729, 1074, 1120
AfaI	GTAC	3 cut(s)	302, 554, 789
AfeI	AGCGCT	1 cut(s)	494
AfiI	CCNNNNNNNGG	3 cut(s)	174, 391, 629
AflIII	ACRYGT	1 cut(s)	1024
AgsI	TTSAA	8 cut(s)	401, 410, 482, 611, 636, 763, 862, 1199
AhdI	GACNNNNNGTC	2 cut(s)	255, 1055
AhlI	ACTAGT	1 cut(s)	254
AjnI	CCWGG	2 cut(s)	622, 628
AloI	GAACNNNNNNTCC	2 cut(s)	60, 92
AluBI	AGCT	4 cut(s)	184, 350, 404, 655
AluI	AGCT	4 cut(s)	184, 350, 404, 655
Alw21I	GWGCWC	3 cut(s)	376, 884, 1002
Alw26I	GTCTC	4 cut(s)	51, 92, 263, 1065
Alw44I	GTGCAC	1 cut(s)	880
AlwI	GGATC	1 cut(s)	164
AlwNI	CAGNNNCTG	1 cut(s)	727
Aor51HI	AGCGCT	1 cut(s)	494
AoxI	GGCC	6 cut(s)	294, 339, 745, 765, 819, 981
ApaI	GGGCCC	1 cut(s)	749
ApaLI	GTGCAC	1 cut(s)	880
ApeKI	GCWGC	5 cut(s)	124, 347, 350, 782, 849
ApoI	RAATTY	1 cut(s)	520
Asp700I	GAANNNNTTC	1 cut(s)	554
AspLEI	GCGC	1 cut(s)	495
AspS9I	GGNCC	7 cut(s)	294, 340, 596, 626, 745, 746, 766
AvaII	GGWCC	2 cut(s)	596, 626
BaeGI	GKGCMC	3 cut(s)	749, 884, 1032
BalI	TGGCCA	1 cut(s)	821
BanII	GRGCYC	1 cut(s)	749
Bbv12I	GWGCWC	3 cut(s)	376, 884, 1002
BbvI	GCAGC	5 cut(s)	111, 337, 359, 794, 861
BccI	CCATC	5 cut(s)	142, 455, 726, 757, 934
BceAI	ACGGC	1 cut(s)	786
BciT130I	CCWGG	2 cut(s)	624, 630
BcoDI	GTCTC	4 cut(s)	51, 92, 263, 1065
BcuI	ACTAGT	1 cut(s)	254
BfaI	CTAG	3 cut(s)	255, 566, 854
BfmI	CTRYAG	2 cut(s)	585, 1087
BfoI	RGCGCY	1 cut(s)	496
BisI	GCNGC	5 cut(s)	125, 348, 351, 783, 850
BlsI	GCNGC	5 cut(s)	126, 349, 352, 784, 851
BmcAI	AGTACT	1 cut(s)	554
Bme1390I	CCNGG	2 cut(s)	624, 630
Bme18I	GGWCC	2 cut(s)	596, 626
BmeRI	GACNNNNNGTC	2 cut(s)	255, 1055
BmgT120I	GGNCC	7 cut(s)	294, 340, 596, 626, 745, 746, 766
BmiI	GGNNCC	4 cut(s)	35, 315, 455, 747
BmrFI	CCNGG	2 cut(s)	624, 630
BmsI	GCATC	3 cut(s)	76, 111, 1141
BpuEI	CTTGAG	2 cut(s)	998, 1081
BsaAI	YACGTR	1 cut(s)	1171
BsaI	GGTCTC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	173
Bsc4I	CCNNNNNNNGG	3 cut(s)	174, 391, 629
Bse1I	ACTGG	3 cut(s)	70, 90, 158
BseBI	CCWGG	2 cut(s)	624, 630
BseDI	CCNNGG	1 cut(s)	173
BseGI	GGATG	5 cut(s)	60, 91, 154, 274, 1156
BseLI	CCNNNNNNNGG	3 cut(s)	174, 391, 629
BseMII	CTCAG	3 cut(s)	324, 537, 719
BseNI	ACTGG	3 cut(s)	70, 90, 158
BseRI	GAGGAG	3 cut(s)	545, 1080, 1083
BseSI	GKGCMC	3 cut(s)	749, 884, 1032
BseXI	GCAGC	5 cut(s)	111, 337, 359, 794, 861
BshFI	GGCC	6 cut(s)	296, 341, 747, 767, 821, 983
BsiHKAI	GWGCWC	3 cut(s)	376, 884, 1002
BslFI	GGGAC	1 cut(s)	165
BslI	CCNNNNNNNGG	3 cut(s)	174, 391, 629
BsmAI	GTCTC	4 cut(s)	51, 92, 263, 1065
BsmFI	GGGAC	1 cut(s)	165
BsmI	GAATGC	1 cut(s)	810
BsnI	GGCC	6 cut(s)	296, 341, 747, 767, 821, 983
Bso31I	GGTCTC	1 cut(s)	51
Bsp120I	GGGCCC	1 cut(s)	745
Bsp1286I	GDGCHC	5 cut(s)	376, 749, 884, 1002, 1032
Bsp143I	GATC	1 cut(s)	169
Bsp19I	CCATGG	1 cut(s)	173
BspACI	CCGC	1 cut(s)	385
BspANI	GGCC	6 cut(s)	296, 341, 747, 767, 821, 983
BspCNI	CTCAG	3 cut(s)	325, 538, 720
BspLI	GGNNCC	4 cut(s)	35, 315, 455, 747
BspPI	GGATC	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	51
BsrI	ACTGG	3 cut(s)	70, 90, 158
BssECI	CCNNGG	1 cut(s)	173
BssMI	GATC	1 cut(s)	169
BssT1I	CCWWGG	1 cut(s)	173
Bst2UI	CCWGG	2 cut(s)	624, 630
Bst4CI	ACNGT	3 cut(s)	224, 368, 458
Bst6I	CTCTTC	1 cut(s)	606
BstBAI	YACGTR	1 cut(s)	1171
BstC8I	GCNNGC	2 cut(s)	376, 1122
BstDEI	CTNAG	5 cut(s)	327, 333, 546, 656, 728
BstDSI	CCRYGG	1 cut(s)	173
BstF5I	GGATG	5 cut(s)	60, 91, 154, 274, 1156
BstH2I	RGCGCY	1 cut(s)	496
BstHHI	GCGC	1 cut(s)	495
BstKTI	GATC	1 cut(s)	172
BstMAI	GTCTC	4 cut(s)	51, 92, 263, 1065
BstMBI	GATC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	4 cut(s)	347, 384, 401, 807
BstNI	CCWGG	2 cut(s)	624, 630
BstNSI	RCATGY	1 cut(s)	1028
BstSCI	CCNGG	2 cut(s)	622, 628
BstSFI	CTRYAG	2 cut(s)	585, 1087
BstSLI	GKGCMC	3 cut(s)	749, 884, 1032
BstV1I	GCAGC	5 cut(s)	111, 337, 359, 794, 861
BsuRI	GGCC	6 cut(s)	296, 341, 747, 767, 821, 983
BtgI	CCRYGG	1 cut(s)	173
BtsCI	GGATG	5 cut(s)	60, 91, 154, 274, 1156
BtsIMutI	CAGTG	2 cut(s)	165, 725
Cac8I	GCNNGC	2 cut(s)	376, 1122
CaiI	CAGNNNCTG	1 cut(s)	727
CfoI	GCGC	1 cut(s)	495
Cfr13I	GGNCC	7 cut(s)	294, 340, 596, 626, 745, 746, 766
Csp6I	GTAC	3 cut(s)	301, 553, 788
CviAII	CATG	6 cut(s)	174, 310, 685, 778, 798, 1025
CviQI	GTAC	3 cut(s)	301, 553, 788
DdeI	CTNAG	5 cut(s)	327, 333, 546, 656, 728
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
DraI	TTTAAA	2 cut(s)	1081, 1144
DriI	GACNNNNNGTC	2 cut(s)	255, 1055
EaeI	YGGCCR	1 cut(s)	819
Eam1104I	CTCTTC	1 cut(s)	606
Eam1105I	GACNNNNNGTC	2 cut(s)	255, 1055
EarI	CTCTTC	1 cut(s)	606
Eco130I	CCWWGG	1 cut(s)	173
Eco147I	AGGCCT	1 cut(s)	983
Eco24I	GRGCYC	1 cut(s)	749
Eco31I	GGTCTC	1 cut(s)	51
Eco47I	GGWCC	2 cut(s)	596, 626
Eco47III	AGCGCT	1 cut(s)	494
Eco57I	CTGAAG	4 cut(s)	509, 729, 1074, 1120
EcoO109I	RGGNCCY	3 cut(s)	340, 745, 766
EcoRI	GAATTC	1 cut(s)	520
EcoRII	CCWGG	2 cut(s)	622, 628
EcoT14I	CCWWGG	1 cut(s)	173
EcoT38I	GRGCYC	1 cut(s)	749
ErhI	CCWWGG	1 cut(s)	173
FaeI	CATG	6 cut(s)	177, 313, 688, 781, 801, 1028
FalI	AAGNNNNNCTT	2 cut(s)	856, 888
FaqI	GGGAC	1 cut(s)	165
FatI	CATG	6 cut(s)	173, 309, 684, 777, 797, 1024
Fnu4HI	GCNGC	5 cut(s)	125, 348, 351, 783, 850
FokI	GGATG	5 cut(s)	67, 98, 141, 281, 1163
FriOI	GRGCYC	1 cut(s)	749
Fsp4HI	GCNGC	5 cut(s)	125, 348, 351, 783, 850
FspBI	CTAG	3 cut(s)	255, 566, 854
GlaI	GCGC	1 cut(s)	494
GluI	GCNGC	5 cut(s)	125, 348, 351, 783, 850
HaeII	RGCGCY	1 cut(s)	496
HaeIII	GGCC	6 cut(s)	296, 341, 747, 767, 821, 983
HhaI	GCGC	1 cut(s)	495
Hin1II	CATG	6 cut(s)	177, 313, 688, 781, 801, 1028
Hin6I	GCGC	1 cut(s)	493
HinP1I	GCGC	1 cut(s)	493
HinfI	GANTC	8 cut(s)	178, 431, 668, 755, 829, 944, 973, 989
Hpy166II	GTNNAC	3 cut(s)	472, 775, 882
Hpy188I	TCNGA	7 cut(s)	85, 169, 268, 489, 754, 972, 1139
Hpy8I	GTNNAC	3 cut(s)	472, 775, 882
HpyAV	CCTTC	5 cut(s)	24, 54, 223, 331, 1144
HpyCH4III	ACNGT	3 cut(s)	224, 368, 458
HpyCH4IV	ACGT	1 cut(s)	1170
HpyCH4V	TGCA	7 cut(s)	127, 217, 347, 353, 698, 810, 882
HpyF10VI	GCNNNNNNNGC	4 cut(s)	347, 384, 401, 807
HpyF3I	CTNAG	5 cut(s)	327, 333, 546, 656, 728
HpySE526I	ACGT	1 cut(s)	1170
Hsp92II	CATG	6 cut(s)	177, 313, 688, 781, 801, 1028
HspAI	GCGC	1 cut(s)	493
Kzo9I	GATC	1 cut(s)	169
LmnI	GCTCC	3 cut(s)	33, 319, 652
Lsp1109I	GCAGC	5 cut(s)	111, 337, 359, 794, 861
LweI	GCATC	3 cut(s)	76, 111, 1141
MaeI	CTAG	3 cut(s)	255, 566, 854
MaeII	ACGT	1 cut(s)	1170
MaeIII	GTNAC	3 cut(s)	541, 723, 1166
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	2 cut(s)	623, 854
MhlI	GDGCHC	5 cut(s)	376, 749, 884, 1002, 1032
MlsI	TGGCCA	1 cut(s)	821
MluCI	AATT	3 cut(s)	102, 520, 636
MluNI	TGGCCA	1 cut(s)	821
MlyI	GAGTC	3 cut(s)	677, 967, 998
MmeI	TCCRAC	3 cut(s)	63, 259, 387
Mox20I	TGGCCA	1 cut(s)	821
MroXI	GAANNNNTTC	1 cut(s)	554
MscI	TGGCCA	1 cut(s)	821
MseI	TTAA	2 cut(s)	1080, 1143
MslI	CAYNNNNRTG	3 cut(s)	146, 730, 1208
Msp20I	TGGCCA	1 cut(s)	821
MspA1I	CMGCKG	1 cut(s)	350
MspR9I	CCNGG	2 cut(s)	624, 630
Mva1269I	GAATGC	1 cut(s)	810
MvaI	CCWGG	2 cut(s)	624, 630
MwoI	GCNNNNNNNGC	4 cut(s)	347, 384, 401, 807
NcoI	CCATGG	1 cut(s)	173
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	6 cut(s)	177, 313, 688, 781, 801, 1028
NlaIV	GGNNCC	4 cut(s)	35, 315, 455, 747
NmeAIII	GCCGAG	1 cut(s)	322
NmuCI	GTSAC	2 cut(s)	723, 1166
NspI	RCATGY	1 cut(s)	1028
PceI	AGGCCT	1 cut(s)	983
PciI	ACATGT	1 cut(s)	1024
PctI	GAATGC	1 cut(s)	810
PdmI	GAANNNNTTC	1 cut(s)	554
PfeI	GAWTC	5 cut(s)	178, 431, 755, 829, 944
PkrI	GCNGC	5 cut(s)	126, 349, 352, 784, 851
PleI	GAGTC	3 cut(s)	676, 967, 997
PpsI	GAGTC	3 cut(s)	676, 967, 997
Ppu21I	YACGTR	1 cut(s)	1171
PscI	ACATGT	1 cut(s)	1024
PsiI	TTATAA	2 cut(s)	237, 647
Psp6I	CCWGG	2 cut(s)	622, 628
PspGI	CCWGG	2 cut(s)	622, 628
PspN4I	GGNNCC	4 cut(s)	35, 315, 455, 747
PspOMI	GGGCCC	1 cut(s)	745
PspPI	GGNCC	7 cut(s)	294, 340, 596, 626, 745, 746, 766
PstNI	CAGNNNCTG	1 cut(s)	727
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	3 cut(s)	302, 554, 789
RsaNI	GTAC	3 cut(s)	301, 553, 788
RseI	CAYNNNNRTG	3 cut(s)	146, 730, 1208
SaqAI	TTAA	2 cut(s)	1080, 1143
SatI	GCNGC	5 cut(s)	125, 348, 351, 783, 850
Sau3AI	GATC	1 cut(s)	169
Sau96I	GGNCC	7 cut(s)	294, 340, 596, 626, 745, 746, 766
ScaI	AGTACT	1 cut(s)	554
SchI	GAGTC	3 cut(s)	677, 967, 998
ScrFI	CCNGG	2 cut(s)	624, 630
SduI	GDGCHC	5 cut(s)	376, 749, 884, 1002, 1032
SfaNI	GCATC	3 cut(s)	76, 111, 1141
SfcI	CTRYAG	2 cut(s)	585, 1087
SinI	GGWCC	2 cut(s)	596, 626
SmiMI	CAYNNNNRTG	3 cut(s)	146, 730, 1208
SmlI	CTYRAG	2 cut(s)	977, 1060
SmoI	CTYRAG	2 cut(s)	977, 1060
SpeI	ACTAGT	1 cut(s)	254
Sse9I	AATT	3 cut(s)	102, 520, 636
SseBI	AGGCCT	1 cut(s)	983
SsiI	CCGC	1 cut(s)	385
SspI	AATATT	3 cut(s)	207, 241, 607
SspMI	CTAG	3 cut(s)	255, 566, 854
StuI	AGGCCT	1 cut(s)	983
StyD4I	CCNGG	2 cut(s)	622, 628
StyI	CCWWGG	1 cut(s)	173
TaaI	ACNGT	3 cut(s)	224, 368, 458
TaiI	ACGT	1 cut(s)	1173
TaqI	TCGA	2 cut(s)	832, 962
TaqII	GACCGA	1 cut(s)	584
TasI	AATT	3 cut(s)	102, 520, 636
TatI	WGTACW	2 cut(s)	552, 787
TfiI	GAWTC	5 cut(s)	178, 431, 755, 829, 944
Tru1I	TTAA	2 cut(s)	1080, 1143
Tru9I	TTAA	2 cut(s)	1080, 1143
TscAI	CASTG	2 cut(s)	165, 732
TseFI	GTSAC	2 cut(s)	723, 1166
TseI	GCWGC	5 cut(s)	124, 347, 350, 782, 849
Tsp45I	GTSAC	2 cut(s)	723, 1166
TspDTI	ATGAA	2 cut(s)	701, 783
TspRI	CASTG	2 cut(s)	165, 732
VneI	GTGCAC	1 cut(s)	880
VpaK11BI	GGWCC	2 cut(s)	596, 626
XapI	RAATTY	1 cut(s)	520
XceI	RCATGY	1 cut(s)	1028
XmnI	GAANNNNTTC	1 cut(s)	554
XspI	CTAG	3 cut(s)	255, 566, 854
ZrmI	AGTACT	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.