Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006295

Physical Location & Seq

Genomic Coordinates Reverse (-)

515115 .. 516952

Gene Structure 1838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G008400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGCCTTTCTTTGTGGCCCTTGTGGTCATAGCAGAGATCGCCTTCTTGGGTAAGCTTGACATCGCAAAGAACACAACTTTAGTCGATTCGTGGGCCGACTTGTTCTTCCCGGCTCCGTTGATTCATGAACTGGCGGTGGAGAGTGATGATTTGGGCTTGCTGAGTTGCGAGGAGTGGTTGGAGAGAGAGGATGCTGCAGAGTATTCCAGGGACTTTGAGAAAGAACCCAAAATCCCTGTGTGTGATACAATTGCCTCTTTCAGTGTTTCCCACAGTTGCAGAGCCATTTTTGATTTCACTGGACTGAGAAGGAGAGAGAATAGAGAGGAGACTGAAGAAGCGGTGAAATTTTATCAACTCCCAGTTCGAGTCATAGCGGGATCAGGACCAGAAGTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005996 GO:0006004 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008417 GO:0009056 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016052 GO:0016740 GO:0016757 GO:0016758 GO:0018392 GO:0019317 GO:0019318 GO:0019320 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036065 GO:0036211 GO:0042354 GO:0042355 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046365 GO:0046920 GO:0070085 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:0140103 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00513 ko01100 map00513 map01100

Pfam Domains

Protein Families

Glyco_transf_10

Protein Analysis

134

Amino Acids

14.99

Weight (kDa)

4.49

Isoelectric Point (pI)

55.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49710 AT3G19280
fragaria_vesca	FvH4_2g05930 FvH4_2g05930
malus_domestica	MD05G1081600.v1.1 MD10G1094900.v1.1
prunus_persica	Prupe.3G008400_v2.0.a1 Prupe.8G126200_v2.0.a1 Prupe.8G126200_v2.0.a1 Prupe.8G126200_v2.0.a1 Prupe.8G126200_v2.0.a1 Prupe.8G126200_v2.0.a1 Prupe.8G126200_v2.0.a1 Prupe.8G126200_v2.0.a1
pyrus_communis	pycom05g07640 pycom12641g00120
rosa_chinensis	RchiOBHm_Chr6g0257471
rosa_laevigata	RLG00000014701
rosa_multiflora	Rmu_sc0003301.1_g000019
rosa_roxburghii	Rroxscaffold_7G00208800
rosa_rugosa	Rorug05G0571600 Rorug05G0571600
rosa_samantha	Rh6AG089500 Rh6BG081000 Rh6CG077800 Rh6DG073400
rosa_wichuraiana	Rw6G007820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	134, 341, 377
AclWI	GGATC	1 cut(s)	388
AcsI	RAATTY	1 cut(s)	347
AcuI	CTGAAG	1 cut(s)	354
AjnI	CCWGG	1 cut(s)	206
AloI	GAACNNNNNNTCC	3 cut(s)	216, 248, 378
AluBI	AGCT	1 cut(s)	55
AluI	AGCT	1 cut(s)	55
Alw26I	GTCTC	1 cut(s)	323
AlwI	GGATC	1 cut(s)	388
AoxI	GGCC	2 cut(s)	15, 93
ApeKI	GCWGC	1 cut(s)	194
ApoI	RAATTY	1 cut(s)	347
AspS9I	GGNCC	3 cut(s)	16, 93, 386
AsuC2I	CCSGG	1 cut(s)	110
AsuHPI	GGTGA	1 cut(s)	355
AvaII	GGWCC	1 cut(s)	386
BbvI	GCAGC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	208
BcnI	CCSGG	1 cut(s)	110
BcoDI	GTCTC	1 cut(s)	323
BfmI	CTRYAG	1 cut(s)	195
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
Bme1390I	CCNGG	2 cut(s)	110, 208
Bme18I	GGWCC	1 cut(s)	386
BmgT120I	GGNCC	3 cut(s)	16, 93, 386
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	2 cut(s)	110, 208
BmrI	ACTGGG	1 cut(s)	356
BmsI	GCATC	1 cut(s)	181
BmuI	ACTGGG	1 cut(s)	356
BpuMI	CCSGG	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	207
Bse1I	ACTGG	3 cut(s)	135, 304, 362
BseBI	CCWGG	1 cut(s)	208
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	1 cut(s)	196
BseMII	CTCAG	2 cut(s)	152, 296
BseNI	ACTGG	3 cut(s)	135, 304, 362
BseRI	GAGGAG	2 cut(s)	185, 341
BseXI	GCAGC	1 cut(s)	181
BshFI	GGCC	2 cut(s)	17, 95
BsiSI	CCGG	1 cut(s)	110
BslFI	GGGAC	1 cut(s)	224
BsmAI	GTCTC	1 cut(s)	323
BsmFI	GGGAC	1 cut(s)	224
BsnI	GGCC	2 cut(s)	17, 95
Bsp143I	GATC	2 cut(s)	36, 380
BspACI	CCGC	3 cut(s)	134, 341, 377
BspANI	GGCC	2 cut(s)	17, 95
BspCNI	CTCAG	2 cut(s)	153, 297
BspHI	TCATGA	1 cut(s)	124
BspLI	GGNNCC	1 cut(s)	114
BspMAI	CTGCAG	1 cut(s)	199
BspPI	GGATC	1 cut(s)	388
BsrI	ACTGG	3 cut(s)	135, 304, 362
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	2 cut(s)	36, 380
Bst2UI	CCWGG	1 cut(s)	208
Bst4CI	ACNGT	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	2 cut(s)	161, 305
BstF5I	GGATG	1 cut(s)	196
BstKTI	GATC	2 cut(s)	39, 383
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	2 cut(s)	36, 380
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNI	CCWGG	1 cut(s)	208
BstSCI	CCNGG	2 cut(s)	108, 206
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	181
BsuRI	GGCC	2 cut(s)	17, 95
BtgZI	GCGATG	1 cut(s)	46
BtsCI	GGATG	1 cut(s)	196
BtsIMutI	CAGTG	2 cut(s)	268, 297
Cac8I	GCNNGC	1 cut(s)	158
CciI	TCATGA	1 cut(s)	124
Cfr13I	GGNCC	3 cut(s)	16, 93, 386
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	6 cut(s)	17, 55, 95, 113, 156, 284
CviKI_1	RGCY	6 cut(s)	17, 55, 95, 113, 156, 284
DdeI	CTNAG	2 cut(s)	161, 305
DpnI	GATC	2 cut(s)	38, 382
DpnII	GATC	2 cut(s)	36, 380
Eco47I	GGWCC	1 cut(s)	386
Eco57I	CTGAAG	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	206
FaeI	CATG	1 cut(s)	128
FaiI	YATR	3 cut(s)	29, 126, 374
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	1 cut(s)	124
FauI	CCCGC	1 cut(s)	370
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	1 cut(s)	195
GluI	GCNGC	1 cut(s)	195
HaeIII	GGCC	2 cut(s)	17, 95
HapII	CCGG	1 cut(s)	110
Hin1II	CATG	1 cut(s)	128
HindIII	AAGCTT	1 cut(s)	53
HinfI	GANTC	3 cut(s)	86, 121, 369
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	1 cut(s)	355
Hpy188III	TCNNGA	2 cut(s)	125, 384
HpyAV	CCTTC	2 cut(s)	52, 303
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4V	TGCA	2 cut(s)	197, 279
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	2 cut(s)	161, 305
Hsp92II	CATG	1 cut(s)	128
Kzo9I	GATC	2 cut(s)	36, 380
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	8 cut(s)	116, 123, 193, 220, 249, 285, 369, 375
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	1 cut(s)	181
MalI	GATC	2 cut(s)	38, 382
MboI	GATC	2 cut(s)	36, 380
MboII	GAAGA	2 cut(s)	97, 347
MfeI	CAATTG	1 cut(s)	249
MluCI	AATT	2 cut(s)	249, 347
MlyI	GAGTC	1 cut(s)	378
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	4 cut(s)	163, 181, 265, 319
MspI	CCGG	1 cut(s)	110
MspR9I	CCNGG	2 cut(s)	110, 208
MunI	CAATTG	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	208
MwoI	GCNNNNNNNGC	1 cut(s)	38
NciI	CCSGG	1 cut(s)	110
NdeII	GATC	2 cut(s)	36, 380
NlaIII	CATG	1 cut(s)	128
NlaIV	GGNNCC	1 cut(s)	114
PagI	TCATGA	1 cut(s)	124
PfeI	GAWTC	2 cut(s)	86, 121
PkrI	GCNGC	1 cut(s)	196
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
Psp6I	CCWGG	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	206
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	3 cut(s)	16, 93, 386
PstI	CTGCAG	1 cut(s)	199
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	2 cut(s)	36, 380
Sau96I	GGNCC	3 cut(s)	16, 93, 386
SchI	GAGTC	1 cut(s)	378
ScrFI	CCNGG	2 cut(s)	110, 208
SetI	ASST	1 cut(s)	57
SfaNI	GCATC	1 cut(s)	181
SfcI	CTRYAG	1 cut(s)	195
SinI	GGWCC	1 cut(s)	386
Sse9I	AATT	2 cut(s)	249, 347
SsiI	CCGC	3 cut(s)	134, 341, 377
StyD4I	CCNGG	2 cut(s)	108, 206
TaaI	ACNGT	1 cut(s)	275
TaqI	TCGA	2 cut(s)	84, 367
TasI	AATT	2 cut(s)	249, 347
TfiI	GAWTC	2 cut(s)	86, 121
TscAI	CASTG	2 cut(s)	268, 304
TseI	GCWGC	1 cut(s)	194
TspDTI	ATGAA	2 cut(s)	113, 141
TspGWI	ACGGA	1 cut(s)	105
TspRI	CASTG	2 cut(s)	268, 304
VpaK11BI	GGWCC	1 cut(s)	386
XapI	RAATTY	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.