Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0006295

Physical Location & Seq

Genomic Coordinates Forward (+)

8073346 .. 8078969

Gene Structure 5624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG073400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGGACAGCCAGTGTTCTCCGATCCATGGAATCAGCTCAATACTATGCAGAGAACAATATTAATAATGCAAGACGGTGGGAAGGGTTATAATATCATTATGACAACTAGTCTCTCATCGGATGTTCCTGTTGGATATTTTTCTTGGGCCGAGTACGACATCATGGCACCTATGCAGCCTAAGACTGAGAAAGCCCTTGCAGCTGCATTTATTTCCAACTGTGGTGCTCGCAACTTCCGCTTACAGGCTCTTGAAGCACTTGAAAAGGCTAACATCAAGATAGATTCTTATGGTGGTTGCCACAGAAACCGTGATGGAAAAGTGGACAAAGTTCAAACTCTGAAGCGCTATAAGTTCAGTTTGGCGTTTGAGAATTCCAACGAGGAGGATTATGTTACTGAGAAGTACTTCCAATCTCTAGTTGCTGGAACTATACCTGTAGTTGTTGGTCCGCCAAATATTGAAGATTTCTCTCCTGGTCCTGGTTCAATTTTATACATCAAGGAGCTAAGTGATGTTGAGTCAGTTGCGAAGACCATGAAAGAACTTGCAGACAATCCTGAAGCATTTAATCAGTCACTAAGATGGAAGTATGAGGGCCCATCTGATTCTTTCAAGGCCCTTGTGGACATGGCAGCAGTACATTCATCATGCCGTCTTTGCATTCACTTGGCAACTAAAATTCGAGAGAAAGAAGAAAGCCGCCTAGAGTTCAAAAGACGACCTTGTAAGTGCACCAGAGGCTCAGGAGTCGTGTATCACTTATATGTGAGAGAAAGAGGGAGATTTGAGATGGAATCCATTTTCATAAGGTCGGGCAATCTGACTCTTGAGGCCTTTGAATCTCTGGTGCTCACAAAGTTTAAATCTCAGAAACATGTGCCCATTTGGAAACAAGAAAGACCTGAAGTCTTGAGAGGAGGAGACGACTTTAAAATTTATAAAATATATCCTGTTGGTTTGACACAGAGGCAGGCTTTATATACCTTAAGATTTAATGGAGATGCTGATTTTAGAAGTCACGTTGAAAGCAACCCGTGTGCAAAGTTTGAAGTCATATTCGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005996 GO:0006004 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008417 GO:0009056 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016052 GO:0016740 GO:0016757 GO:0016758 GO:0018392 GO:0019317 GO:0019318 GO:0019320 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036065 GO:0036211 GO:0042354 GO:0042355 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046365 GO:0046920 GO:0070085 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:0140103 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00513 ko01100 map00513 map01100

Pfam Domains

Protein Families

Glyco_transf_10

Protein Analysis

355

Amino Acids

40.41

Weight (kDa)

8.52

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_10	PF00852	63 - 230	3.5e-32	Glycosyltransferase family 10 (fucosyltransferase) C-term

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49710 AT3G19280
fragaria_vesca	FvH4_2g05930 FvH4_2g05930
malus_domestica	MD05G1081600.v1.1 MD10G1094900.v1.1
prunus_persica	Prupe.3G008400_v2.0.a1 Prupe.8G126200_v2.0.a1 Prupe.8G126200_v2.0.a1 Prupe.8G126200_v2.0.a1 Prupe.8G126200_v2.0.a1 Prupe.8G126200_v2.0.a1 Prupe.8G126200_v2.0.a1 Prupe.8G126200_v2.0.a1
pyrus_communis	pycom05g07640 pycom12641g00120
rosa_chinensis	RchiOBHm_Chr6g0257471
rosa_laevigata	RLG00000014701
rosa_multiflora	Rmu_sc0003301.1_g000019
rosa_roxburghii	Rroxscaffold_7G00208800
rosa_rugosa	Rorug05G0571600 Rorug05G0571600
rosa_samantha	Rh6AG089500 Rh6BG081000 Rh6CG077800 Rh6DG073400
rosa_wichuraiana	Rw6G007820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	90, 942
AccB1I	GGYRCC	1 cut(s)	166
AciI	CCGC	3 cut(s)	238, 452, 703
AclWI	GGATC	1 cut(s)	17
AcsI	RAATTY	3 cut(s)	373, 681, 936
AcuI	CTGAAG	3 cut(s)	362, 582, 927
AfaI	GTAC	3 cut(s)	155, 407, 642
AfeI	AGCGCT	1 cut(s)	347
AfiI	CCNNNNNNNGG	3 cut(s)	27, 244, 482
AflII	CTTAAG	1 cut(s)	988
AflIII	ACRYGT	1 cut(s)	877
AhdI	GACNNNNNGTC	2 cut(s)	108, 908
AhlI	ACTAGT	1 cut(s)	107
AjnI	CCWGG	2 cut(s)	475, 481
AluBI	AGCT	3 cut(s)	37, 203, 508
AluI	AGCT	3 cut(s)	37, 203, 508
Alw21I	GWGCWC	3 cut(s)	229, 737, 855
Alw26I	GTCTC	2 cut(s)	116, 918
Alw44I	GTGCAC	1 cut(s)	733
AlwI	GGATC	1 cut(s)	17
Aor51HI	AGCGCT	1 cut(s)	347
AoxI	GGCC	4 cut(s)	147, 598, 618, 834
ApaI	GGGCCC	1 cut(s)	602
ApaLI	GTGCAC	1 cut(s)	733
ApeKI	GCWGC	4 cut(s)	175, 200, 203, 635
ApoI	RAATTY	3 cut(s)	373, 681, 936
AseI	ATTAAT	1 cut(s)	62
Asp700I	GAANNNNTTC	1 cut(s)	407
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	6 cut(s)	147, 449, 479, 598, 599, 619
AvaII	GGWCC	2 cut(s)	449, 479
BaeGI	GKGCMC	3 cut(s)	602, 737, 885
BanI	GGYRCC	1 cut(s)	166
BanII	GRGCYC	1 cut(s)	602
BbsI	GAAGAC	1 cut(s)	539
Bbv12I	GWGCWC	3 cut(s)	229, 737, 855
BbvI	GCAGC	4 cut(s)	187, 190, 212, 647
BccI	CCATC	4 cut(s)	308, 579, 610, 787
BceAI	ACGGC	1 cut(s)	639
BciT130I	CCWGG	2 cut(s)	477, 483
BcoDI	GTCTC	2 cut(s)	116, 918
BcuI	ACTAGT	1 cut(s)	107
BfaI	CTAG	3 cut(s)	108, 419, 707
BfmI	CTRYAG	1 cut(s)	438
BfoI	RGCGCY	1 cut(s)	349
BfrI	CTTAAG	1 cut(s)	988
BisI	GCNGC	5 cut(s)	176, 201, 204, 636, 703
BlsI	GCNGC	5 cut(s)	177, 202, 205, 637, 704
BmcAI	AGTACT	1 cut(s)	407
Bme1390I	CCNGG	2 cut(s)	477, 483
Bme18I	GGWCC	2 cut(s)	449, 479
BmeRI	GACNNNNNGTC	2 cut(s)	108, 908
BmgT120I	GGNCC	6 cut(s)	147, 449, 479, 598, 599, 619
BmiI	GGNNCC	2 cut(s)	168, 600
BmrFI	CCNGG	2 cut(s)	477, 483
BmsI	GCATC	1 cut(s)	994
BpiI	GAAGAC	1 cut(s)	539
Bpu10I	CCTNAGC	1 cut(s)	745
BpuEI	CTTGAG	2 cut(s)	851, 934
BsaJI	CCNNGG	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 244, 482
Bse1I	ACTGG	1 cut(s)	11
BseBI	CCWGG	2 cut(s)	477, 483
BseDI	CCNNGG	1 cut(s)	26
BseGI	GGATG	1 cut(s)	127
BseLI	CCNNNNNNNGG	3 cut(s)	27, 244, 482
BseMII	CTCAG	4 cut(s)	177, 390, 759, 884
BseNI	ACTGG	1 cut(s)	11
BseRI	GAGGAG	3 cut(s)	398, 933, 936
BseSI	GKGCMC	3 cut(s)	602, 737, 885
BseXI	GCAGC	4 cut(s)	187, 190, 212, 647
BshFI	GGCC	4 cut(s)	149, 600, 620, 836
BshNI	GGYRCC	1 cut(s)	166
BsiHKAI	GWGCWC	3 cut(s)	229, 737, 855
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	3 cut(s)	27, 244, 482
BsmAI	GTCTC	2 cut(s)	116, 918
BsmBI	CGTCTC	1 cut(s)	918
BsmFI	GGGAC	1 cut(s)	18
BsmI	GAATGC	1 cut(s)	663
BsnI	GGCC	4 cut(s)	149, 600, 620, 836
Bsp120I	GGGCCC	1 cut(s)	598
Bsp1286I	GDGCHC	5 cut(s)	229, 602, 737, 855, 885
Bsp143I	GATC	1 cut(s)	22
Bsp19I	CCATGG	1 cut(s)	26
BspACI	CCGC	3 cut(s)	238, 452, 703
BspANI	GGCC	4 cut(s)	149, 600, 620, 836
BspCNI	CTCAG	4 cut(s)	178, 391, 758, 883
BspLI	GGNNCC	2 cut(s)	168, 600
BspPI	GGATC	1 cut(s)	17
BspT107I	GGYRCC	1 cut(s)	166
BspTI	CTTAAG	1 cut(s)	988
BsrI	ACTGG	1 cut(s)	11
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	1 cut(s)	22
BssT1I	CCWWGG	1 cut(s)	26
Bst2UI	CCWGG	2 cut(s)	477, 483
Bst4CI	ACNGT	3 cut(s)	77, 221, 311
BstAFI	CTTAAG	1 cut(s)	988
BstC8I	GCNNGC	2 cut(s)	229, 975
BstDEI	CTNAG	7 cut(s)	180, 186, 399, 509, 581, 745, 870
BstDSI	CCRYGG	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	127
BstH2I	RGCGCY	1 cut(s)	349
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	1 cut(s)	25
BstMAI	GTCTC	2 cut(s)	116, 918
BstMBI	GATC	1 cut(s)	22
BstMWI	GCNNNNNNNGC	5 cut(s)	200, 237, 254, 660, 741
BstNI	CCWGG	2 cut(s)	477, 483
BstNSI	RCATGY	1 cut(s)	881
BstSCI	CCNGG	2 cut(s)	475, 481
BstSFI	CTRYAG	1 cut(s)	438
BstSLI	GKGCMC	3 cut(s)	602, 737, 885
BstV1I	GCAGC	4 cut(s)	187, 190, 212, 647
BstV2I	GAAGAC	1 cut(s)	539
BsuRI	GGCC	4 cut(s)	149, 600, 620, 836
BtgI	CCRYGG	1 cut(s)	26
BtsCI	GGATG	1 cut(s)	127
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	2 cut(s)	229, 975
CfoI	GCGC	1 cut(s)	348
Cfr13I	GGNCC	6 cut(s)	147, 449, 479, 598, 599, 619
Csp6I	GTAC	3 cut(s)	154, 406, 641
CviAII	CATG	6 cut(s)	27, 163, 538, 631, 651, 878
CviQI	GTAC	3 cut(s)	154, 406, 641
DdeI	CTNAG	7 cut(s)	180, 186, 399, 509, 581, 745, 870
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
DraI	TTTAAA	2 cut(s)	865, 934
DriI	GACNNNNNGTC	2 cut(s)	108, 908
Eam1105I	GACNNNNNGTC	2 cut(s)	108, 908
EciI	GGCGGA	1 cut(s)	441
Eco130I	CCWWGG	1 cut(s)	26
Eco147I	AGGCCT	1 cut(s)	836
Eco24I	GRGCYC	1 cut(s)	602
Eco47I	GGWCC	2 cut(s)	449, 479
Eco47III	AGCGCT	1 cut(s)	347
Eco57I	CTGAAG	3 cut(s)	362, 582, 927
EcoO109I	RGGNCCY	2 cut(s)	598, 619
EcoRI	GAATTC	1 cut(s)	373
EcoRII	CCWGG	2 cut(s)	475, 481
EcoT14I	CCWWGG	1 cut(s)	26
EcoT38I	GRGCYC	1 cut(s)	602
ErhI	CCWWGG	1 cut(s)	26
Esp3I	CGTCTC	1 cut(s)	918
FaeI	CATG	6 cut(s)	30, 166, 541, 634, 654, 881
FalI	AAGNNNNNCTT	2 cut(s)	709, 741
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	6 cut(s)	26, 162, 537, 630, 650, 877
Fnu4HI	GCNGC	5 cut(s)	176, 201, 204, 636, 703
FokI	GGATG	1 cut(s)	134
FriOI	GRGCYC	1 cut(s)	602
Fsp4HI	GCNGC	5 cut(s)	176, 201, 204, 636, 703
FspBI	CTAG	3 cut(s)	108, 419, 707
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	5 cut(s)	176, 201, 204, 636, 703
HaeII	RGCGCY	1 cut(s)	349
HaeIII	GGCC	4 cut(s)	149, 600, 620, 836
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	6 cut(s)	30, 166, 541, 634, 654, 881
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HinfI	GANTC	8 cut(s)	31, 284, 521, 608, 750, 797, 826, 842
Hpy166II	GTNNAC	3 cut(s)	325, 628, 735
Hpy188I	TCNGA	6 cut(s)	22, 121, 342, 607, 825, 873
Hpy188III	TCNNGA	7 cut(s)	251, 277, 560, 686, 747, 830, 913
Hpy8I	GTNNAC	3 cut(s)	325, 628, 735
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	3 cut(s)	77, 221, 311
HpyCH4IV	ACGT	1 cut(s)	1023
HpyCH4V	TGCA	9 cut(s)	49, 70, 175, 200, 206, 551, 663, 735, 1043
HpyF10VI	GCNNNNNNNGC	5 cut(s)	200, 237, 254, 660, 741
HpyF3I	CTNAG	7 cut(s)	180, 186, 399, 509, 581, 745, 870
HpySE526I	ACGT	1 cut(s)	1023
Hsp92II	CATG	6 cut(s)	30, 166, 541, 634, 654, 881
HspAI	GCGC	1 cut(s)	346
Kzo9I	GATC	1 cut(s)	22
LmnI	GCTCC	1 cut(s)	505
Lsp1109I	GCAGC	4 cut(s)	187, 190, 212, 647
LweI	GCATC	1 cut(s)	994
MaeI	CTAG	3 cut(s)	108, 419, 707
MaeII	ACGT	1 cut(s)	1023
MaeIII	GTNAC	3 cut(s)	394, 576, 1019
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	3 cut(s)	476, 544, 707
MhlI	GDGCHC	5 cut(s)	229, 602, 737, 855, 885
MluCI	AATT	4 cut(s)	373, 489, 681, 936
MlyI	GAGTC	3 cut(s)	530, 759, 820
MmeI	TCCRAC	3 cut(s)	112, 240, 402
MnlI	CCTC	9 cut(s)	376, 379, 589, 734, 773, 826, 911, 914, 963
MroXI	GAANNNNTTC	1 cut(s)	407
MseI	TTAA	6 cut(s)	62, 570, 864, 933, 989, 996
MslI	CAYNNNNRTG	3 cut(s)	583, 765, 1061
MspA1I	CMGCKG	1 cut(s)	203
MspCI	CTTAAG	1 cut(s)	988
MspR9I	CCNGG	2 cut(s)	477, 483
Mva1269I	GAATGC	1 cut(s)	663
MvaI	CCWGG	2 cut(s)	477, 483
MwoI	GCNNNNNNNGC	5 cut(s)	200, 237, 254, 660, 741
NcoI	CCATGG	1 cut(s)	26
NdeII	GATC	1 cut(s)	22
NlaIII	CATG	6 cut(s)	30, 166, 541, 634, 654, 881
NlaIV	GGNNCC	2 cut(s)	168, 600
NmeAIII	GCCGAG	1 cut(s)	175
NmuCI	GTSAC	2 cut(s)	576, 1019
NspI	RCATGY	1 cut(s)	881
PceI	AGGCCT	1 cut(s)	836
PciI	ACATGT	1 cut(s)	877
PctI	GAATGC	1 cut(s)	663
PdmI	GAANNNNTTC	1 cut(s)	407
PfeI	GAWTC	5 cut(s)	31, 284, 608, 797, 842
PkrI	GCNGC	5 cut(s)	177, 202, 205, 637, 704
PleI	GAGTC	3 cut(s)	529, 758, 820
PpsI	GAGTC	3 cut(s)	529, 758, 820
PscI	ACATGT	1 cut(s)	877
PshBI	ATTAAT	1 cut(s)	62
PsiI	TTATAA	2 cut(s)	90, 942
Psp6I	CCWGG	2 cut(s)	475, 481
PspGI	CCWGG	2 cut(s)	475, 481
PspN4I	GGNNCC	2 cut(s)	168, 600
PspOMI	GGGCCC	1 cut(s)	598
PspPI	GGNCC	6 cut(s)	147, 449, 479, 598, 599, 619
PvuII	CAGCTG	1 cut(s)	203
RsaI	GTAC	3 cut(s)	155, 407, 642
RsaNI	GTAC	3 cut(s)	154, 406, 641
RseI	CAYNNNNRTG	3 cut(s)	583, 765, 1061
SaqAI	TTAA	6 cut(s)	62, 570, 864, 933, 989, 996
SatI	GCNGC	5 cut(s)	176, 201, 204, 636, 703
Sau3AI	GATC	1 cut(s)	22
Sau96I	GGNCC	6 cut(s)	147, 449, 479, 598, 599, 619
ScaI	AGTACT	1 cut(s)	407
SchI	GAGTC	3 cut(s)	530, 759, 820
ScrFI	CCNGG	2 cut(s)	477, 483
SduI	GDGCHC	5 cut(s)	229, 602, 737, 855, 885
SfaNI	GCATC	1 cut(s)	994
SfcI	CTRYAG	1 cut(s)	438
SinI	GGWCC	2 cut(s)	449, 479
SmiMI	CAYNNNNRTG	3 cut(s)	583, 765, 1061
SmlI	CTYRAG	3 cut(s)	830, 913, 988
SmoI	CTYRAG	3 cut(s)	830, 913, 988
SpeI	ACTAGT	1 cut(s)	107
Sse9I	AATT	4 cut(s)	373, 489, 681, 936
SseBI	AGGCCT	1 cut(s)	836
SsiI	CCGC	3 cut(s)	238, 452, 703
SspI	AATATT	2 cut(s)	60, 460
SspMI	CTAG	3 cut(s)	108, 419, 707
StuI	AGGCCT	1 cut(s)	836
StyD4I	CCNGG	2 cut(s)	475, 481
StyI	CCWWGG	1 cut(s)	26
TaaI	ACNGT	3 cut(s)	77, 221, 311
TaiI	ACGT	1 cut(s)	1026
TaqI	TCGA	1 cut(s)	685
TasI	AATT	4 cut(s)	373, 489, 681, 936
TatI	WGTACW	2 cut(s)	405, 640
TauI	GCSGC	1 cut(s)	705
TfiI	GAWTC	5 cut(s)	31, 284, 608, 797, 842
Tru1I	TTAA	6 cut(s)	62, 570, 864, 933, 989, 996
Tru9I	TTAA	6 cut(s)	62, 570, 864, 933, 989, 996
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	2 cut(s)	576, 1019
TseI	GCWGC	4 cut(s)	175, 200, 203, 635
Tsp45I	GTSAC	2 cut(s)	576, 1019
TspDTI	ATGAA	3 cut(s)	554, 636, 796
TspRI	CASTG	1 cut(s)	18
Vha464I	CTTAAG	1 cut(s)	988
VneI	GTGCAC	1 cut(s)	733
VpaK11BI	GGWCC	2 cut(s)	449, 479
VspI	ATTAAT	1 cut(s)	62
XapI	RAATTY	3 cut(s)	373, 681, 936
XceI	RCATGY	1 cut(s)	881
XmnI	GAANNNNTTC	1 cut(s)	407
XspI	CTAG	3 cut(s)	108, 419, 707
ZrmI	AGTACT	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.