FvH4_2g06281

L-threonine ammonia-lyase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0019660
Physical Location & Seq
Forward (+)
5218196 .. 5218882
687 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g06281.t1

Sequence Viewer

Length: 687 bp
ATGGCTCCGGCAAGGACGGTACAAGTCTCTGTGCCCTCCACCACCCCTCCAAATTCCGCCTTTGTACAACCACTCCCTCAAGATGAAAACACCGGTATCTTAACTTCTTCATCTTATGAACCCGAAGAAGTAACTCAAACCCATCTTGCTGAAGTAAGGCAGGGTATGGAAATCTTGCGTGAGGAAATGCAAGAAGCTGCAGTCTCAGCCACGTCCCAGCAACGTGCCTTTGAAAATCGCATCACAGCTCACCTCGCAGCCATGCAAAACACCATGGTGCAATGCCTAGTGCACCGCCAGCCCCCACCACATTCAACACCACCCGGTTCCTCATCTTTCCCAGAAATCACCTTCGGCAGCCTCTCTGACGCAGGTCTCCCCCTCCCTCCCACACCATTTCCAAATCAACTCACCATTCACCAAGGTTCCCCACATACTCCAACCCTCACAGTCACACCACCCGTTGAAGCCACCATCACATCCTTCCCCCCACTTCCCCTGCCTACCTCTACTACCCATGTAACCCCACCACTCAACCTTATACCCGTCCCTGACCTCAACCACCTCTTCGCACAACAACAACAACAACCCAATCCTACAAACCAACTGCCCCACCAACCTATTGCTGCGAATGGCCACCCCTTCTACCGGCGCTCCAAAGATCGACCTTCCCCGATTCATGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

229

Amino Acids

24.75

Weight (kDa)

5.95

Isoelectric Point (pI)

62.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019660)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06281 FvH4_4g00101
rosa_chinensis RchiOBHm_Chr1g0339791 RchiOBHm_Chr4g0426521
rosa_multiflora Rmu_sc0007466.1_g000003
rosa_samantha Rh6CG335600
rosa_wichuraiana Rw0G010860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 362
AciI CCGC 2 cut(s) 57, 295
AcoI YGGCCR 1 cut(s) 634
AcsI RAATTY 1 cut(s) 52
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 2 cut(s) 21, 66
AfiI CCNNNNNNNGG 2 cut(s) 648, 680
AgeI ACCGGT 1 cut(s) 92
AgsI TTSAA 3 cut(s) 233, 315, 467
AjiI CACGTC 1 cut(s) 213
AleI CACNNNNGTG 1 cut(s) 275
AluBI AGCT 2 cut(s) 197, 248
AluI AGCT 2 cut(s) 197, 248
Alw21I GWGCWC 1 cut(s) 294
Alw26I GTCTC 3 cut(s) 31, 208, 380
Alw44I GTGCAC 1 cut(s) 290
AoxI GGCC 1 cut(s) 634
ApaLI GTGCAC 1 cut(s) 290
ApeKI GCWGC 4 cut(s) 197, 257, 357, 626
ApoI RAATTY 1 cut(s) 52
AsiGI ACCGGT 1 cut(s) 92
AspLEI GCGC 1 cut(s) 654
AsuC2I CCSGG 1 cut(s) 324
AsuHPI GGTGA 4 cut(s) 242, 340, 403, 410
BaeGI GKGCMC 2 cut(s) 36, 294
BaeI ACNNNNGTAYC 2 cut(s) 79, 112
BalI TGGCCA 1 cut(s) 636
BarI GAAGNNNNNNTAC 2 cut(s) 88, 120
Bbv12I GWGCWC 1 cut(s) 294
BbvI GCAGC 4 cut(s) 184, 269, 369, 613
BccI CCATC 2 cut(s) 150, 482
BcnI CCSGG 1 cut(s) 324
BcoDI GTCTC 3 cut(s) 31, 208, 380
BfaI CTAG 1 cut(s) 287
BfmI CTRYAG 1 cut(s) 198
BfoI RGCGCY 1 cut(s) 655
BfuAI ACCTGC 1 cut(s) 362
BisI GCNGC 4 cut(s) 198, 258, 358, 627
BlsI GCNGC 4 cut(s) 199, 259, 359, 628
Bme1390I CCNGG 1 cut(s) 324
BmgBI CACGTC 1 cut(s) 213
BmiI GGNNCC 3 cut(s) 6, 328, 427
BmrFI CCNGG 1 cut(s) 324
BmsI GCATC 1 cut(s) 249
BoxI GACNNNNGTC 1 cut(s) 372
BpuEI CTTGAG 1 cut(s) 63
BpuMI CCSGG 1 cut(s) 324
BsaI GGTCTC 1 cut(s) 380
BsaJI CCNNGG 2 cut(s) 273, 421
BsaWI WCCGGW 1 cut(s) 92
BsaXI ACNNNNNCTCC 6 cut(s) 31, 57, 61, 87, 638, 668
Bsc4I CCNNNNNNNGG 2 cut(s) 648, 680
Bse118I RCCGGY 2 cut(s) 92, 648
Bse3DI GCAATG 1 cut(s) 287
BseDI CCNNGG 2 cut(s) 273, 421
BseGI GGATG 1 cut(s) 479
BseLI CCNNNNNNNGG 2 cut(s) 648, 680
BseMI GCAATG 1 cut(s) 287
BseMII CTCAG 1 cut(s) 219
BseSI GKGCMC 2 cut(s) 36, 294
BseXI GCAGC 4 cut(s) 184, 269, 369, 613
BseYI CCCAGC 1 cut(s) 216
BshFI GGCC 1 cut(s) 636
BshTI ACCGGT 1 cut(s) 92
BsiHKAI GWGCWC 1 cut(s) 294
BsiSI CCGG 4 cut(s) 8, 93, 324, 649
BslFI GGGAC 2 cut(s) 199, 533
BslI CCNNNNNNNGG 2 cut(s) 648, 680
BsmAI GTCTC 3 cut(s) 31, 208, 380
BsmFI GGGAC 2 cut(s) 199, 533
BsnI GGCC 1 cut(s) 636
Bso31I GGTCTC 1 cut(s) 380
Bsp1286I GDGCHC 2 cut(s) 36, 294
Bsp1407I TGTACA 1 cut(s) 64
Bsp143I GATC 1 cut(s) 661
Bsp19I CCATGG 1 cut(s) 273
BspACI CCGC 2 cut(s) 57, 295
BspANI GGCC 1 cut(s) 636
BspCNI CTCAG 1 cut(s) 218
BspLI GGNNCC 3 cut(s) 6, 328, 427
BspMAI CTGCAG 1 cut(s) 202
BspMI ACCTGC 1 cut(s) 362
BspTNI GGTCTC 1 cut(s) 380
BsrDI GCAATG 1 cut(s) 287
BsrFI RCCGGY 2 cut(s) 92, 648
BsrGI TGTACA 1 cut(s) 64
BssAI RCCGGY 2 cut(s) 92, 648
BssECI CCNNGG 2 cut(s) 273, 421
BssMI GATC 1 cut(s) 661
BssT1I CCWWGG 2 cut(s) 273, 421
Bst4CI ACNGT 2 cut(s) 19, 451
Bst6I CTCTTC 1 cut(s) 572
BstAUI TGTACA 1 cut(s) 64
BstC8I GCNNGC 1 cut(s) 299
BstDEI CTNAG 1 cut(s) 205
BstDSI CCRYGG 1 cut(s) 273
BstF5I GGATG 1 cut(s) 479
BstH2I RGCGCY 1 cut(s) 655
BstHHI GCGC 1 cut(s) 654
BstKTI GATC 1 cut(s) 664
BstMAI GTCTC 3 cut(s) 31, 208, 380
BstMBI GATC 1 cut(s) 661
BstMWI GCNNNNNNNGC 3 cut(s) 206, 254, 298
BstPAI GACNNNNGTC 1 cut(s) 372
BstSCI CCNGG 1 cut(s) 322
BstSFI CTRYAG 1 cut(s) 198
BstSLI GKGCMC 2 cut(s) 36, 294
BstV1I GCAGC 4 cut(s) 184, 269, 369, 613
BsuRI GGCC 1 cut(s) 636
BtgI CCRYGG 1 cut(s) 273
BtrI CACGTC 1 cut(s) 213
BtsCI GGATG 1 cut(s) 479
BveI ACCTGC 1 cut(s) 362
Cac8I GCNNGC 1 cut(s) 299
CfoI GCGC 1 cut(s) 654
Cfr10I RCCGGY 2 cut(s) 92, 648
CseI GACGC 1 cut(s) 377
Csp6I GTAC 2 cut(s) 20, 65
CspAI ACCGGT 1 cut(s) 92
CviAII CATG 4 cut(s) 262, 274, 518, 680
CviJI RGCY 9 cut(s) 5, 197, 209, 248, 260, 301, 360, 470, 636
CviKI_1 RGCY 9 cut(s) 5, 197, 209, 248, 260, 301, 360, 470, 636
CviQI GTAC 2 cut(s) 20, 65
DdeI CTNAG 1 cut(s) 205
DpnI GATC 1 cut(s) 663
DpnII GATC 1 cut(s) 661
EaeI YGGCCR 1 cut(s) 634
Eam1104I CTCTTC 1 cut(s) 572
EarI CTCTTC 1 cut(s) 572
EciI GGCGGA 1 cut(s) 46
Eco130I CCWWGG 2 cut(s) 273, 421
Eco31I GGTCTC 1 cut(s) 380
Eco57I CTGAAG 1 cut(s) 171
EcoT14I CCWWGG 2 cut(s) 273, 421
ErhI CCWWGG 2 cut(s) 273, 421
FaeI CATG 4 cut(s) 265, 277, 521, 683
FaiI YATR 8 cut(s) 117, 167, 263, 275, 435, 519, 542, 681
FaqI GGGAC 2 cut(s) 199, 533
FatI CATG 4 cut(s) 261, 273, 517, 679
Fnu4HI GCNGC 4 cut(s) 198, 258, 358, 627
FokI GGATG 1 cut(s) 466
Fsp4HI GCNGC 4 cut(s) 198, 258, 358, 627
FspBI CTAG 1 cut(s) 287
GlaI GCGC 1 cut(s) 653
GluI GCNGC 4 cut(s) 198, 258, 358, 627
GsaI CCCAGC 1 cut(s) 220
HaeII RGCGCY 1 cut(s) 655
HaeIII GGCC 1 cut(s) 636
HapII CCGG 4 cut(s) 8, 93, 324, 649
HgaI GACGC 1 cut(s) 377
HhaI GCGC 1 cut(s) 654
Hin1II CATG 4 cut(s) 265, 277, 521, 683
Hin6I GCGC 1 cut(s) 652
HinP1I GCGC 1 cut(s) 652
HinfI GANTC 1 cut(s) 676
HpaII CCGG 4 cut(s) 8, 93, 324, 649
HphI GGTGA 4 cut(s) 242, 340, 403, 410
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 1 cut(s) 367
Hpy188III TCNNGA 1 cut(s) 80
Hpy8I GTNNAC 1 cut(s) 292
HpyAV CCTTC 4 cut(s) 361, 493, 652, 678
HpyCH4III ACNGT 2 cut(s) 19, 451
HpyCH4IV ACGT 2 cut(s) 212, 223
HpyCH4V TGCA 5 cut(s) 190, 200, 265, 280, 292
HpyF10VI GCNNNNNNNGC 3 cut(s) 206, 254, 298
HpyF3I CTNAG 1 cut(s) 205
HpySE526I ACGT 2 cut(s) 212, 223
Hsp92II CATG 4 cut(s) 265, 277, 521, 683
HspAI GCGC 1 cut(s) 652
Kzo9I GATC 1 cut(s) 661
LmnI GCTCC 2 cut(s) 10, 659
Lsp1109I GCAGC 4 cut(s) 184, 269, 369, 613
LweI GCATC 1 cut(s) 249
MaeI CTAG 1 cut(s) 287
MaeII ACGT 2 cut(s) 212, 223
MaeIII GTNAC 3 cut(s) 130, 451, 520
MalI GATC 1 cut(s) 663
MboI GATC 1 cut(s) 661
MboII GAAGA 3 cut(s) 99, 137, 559
MhlI GDGCHC 2 cut(s) 36, 294
MlsI TGGCCA 1 cut(s) 636
MluCI AATT 1 cut(s) 52
MluNI TGGCCA 1 cut(s) 636
MmeI TCCRAC 1 cut(s) 464
Mox20I TGGCCA 1 cut(s) 636
MscI TGGCCA 1 cut(s) 636
MseI TTAA 1 cut(s) 101
MslI CAYNNNNRTG 1 cut(s) 275
Msp20I TGGCCA 1 cut(s) 636
MspI CCGG 4 cut(s) 8, 93, 324, 649
MspR9I CCNGG 1 cut(s) 324
MwoI GCNNNNNNNGC 3 cut(s) 206, 254, 298
NciI CCSGG 1 cut(s) 324
NcoI CCATGG 1 cut(s) 273
NdeII GATC 1 cut(s) 661
NlaIII CATG 4 cut(s) 265, 277, 521, 683
NlaIV GGNNCC 3 cut(s) 6, 328, 427
NmuCI GTSAC 1 cut(s) 451
OliI CACNNNNGTG 1 cut(s) 275
PfeI GAWTC 1 cut(s) 676
PinAI ACCGGT 1 cut(s) 92
PkrI GCNGC 4 cut(s) 199, 259, 359, 628
PshAI GACNNNNGTC 1 cut(s) 372
PspFI CCCAGC 1 cut(s) 216
PspN4I GGNNCC 3 cut(s) 6, 328, 427
PstI CTGCAG 1 cut(s) 202
RsaI GTAC 2 cut(s) 21, 66
RsaNI GTAC 2 cut(s) 20, 65
RseI CAYNNNNRTG 1 cut(s) 275
SaqAI TTAA 1 cut(s) 101
SatI GCNGC 4 cut(s) 198, 258, 358, 627
Sau3AI GATC 1 cut(s) 661
ScrFI CCNGG 1 cut(s) 324
SduI GDGCHC 2 cut(s) 36, 294
SfaNI GCATC 1 cut(s) 249
SfcI CTRYAG 1 cut(s) 198
SmiMI CAYNNNNRTG 1 cut(s) 275
SmlI CTYRAG 1 cut(s) 78
SmoI CTYRAG 1 cut(s) 78
Sse9I AATT 1 cut(s) 52
SsiI CCGC 2 cut(s) 57, 295
SspMI CTAG 1 cut(s) 287
StyD4I CCNGG 1 cut(s) 322
StyI CCWWGG 2 cut(s) 273, 421
TaaI ACNGT 2 cut(s) 19, 451
TaiI ACGT 2 cut(s) 215, 226
TaqI TCGA 1 cut(s) 664
TasI AATT 1 cut(s) 52
TatI WGTACW 1 cut(s) 64
TfiI GAWTC 1 cut(s) 676
Tru1I TTAA 1 cut(s) 101
Tru9I TTAA 1 cut(s) 101
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 4 cut(s) 197, 257, 357, 626
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 4 cut(s) 99, 99, 132, 668
VneI GTGCAC 1 cut(s) 290
XapI RAATTY 1 cut(s) 52
XspI CTAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.