Rh6CG335600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0019660
Physical Location & Seq
Reverse (-)
52392900 .. 52393466
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG335600.1

Sequence Viewer

Length: 567 bp
ATGTCTGCCCAGTTTGCAGCCTTGCAAAACACGGTGGTCGCCTCCTTGGTTCATCGTCAACAACCTCCAGCTAGCTCTACCTCTAGCTCCCCACAAATTATTTTTGGATCTCTGAACTCACCTTCTCCCATCTCTACGCCGACAAGCAGTGCCTCTAGCTCGCCTCCGTTGCCTATAGGCACCACCACCACCACCACCACTCTACCACCGCCCACCGCCACCGCCACCGCACCTCTCCCACAGTCCACTCCATCATCTCTTACCCTTATCCCACACCCCCAATATTCTTGGCCATACCCACCTCACTTCTACCCACAACCACATATTCATCATTCCCAACCTTCCCCTGGGTTTTCTTACACCGCCGGCCCCTCGAACTCAGCCACCTATTCCACCATCACCAACACCACTCACTCCGCGTACTCTGACCCACAATCACAGCCCCTCTTGAACCACACTTTACCTCCTTATAAACACCAACAAACAACCCACCCATACCCAGATTACTCTTTTAAACCTCCAAAAATCGACCTACCCCATTTCACTGGTGTTGATGCCATGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

20.09

Weight (kDa)

6.82

Isoelectric Point (pI)

68.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019660)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06281 FvH4_4g00101
rosa_chinensis RchiOBHm_Chr1g0339791 RchiOBHm_Chr4g0426521
rosa_multiflora Rmu_sc0007466.1_g000003
rosa_samantha Rh6CG335600
rosa_wichuraiana Rw0G010860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 471
AccB1I GGYRCC 1 cut(s) 179
AccII CGCG 1 cut(s) 419
AciI CCGC 6 cut(s) 209, 216, 222, 228, 363, 417
AclWI GGATC 1 cut(s) 115
AcoI YGGCCR 1 cut(s) 290
AfaI GTAC 1 cut(s) 422
AfiI CCNNNNNNNGG 1 cut(s) 347
AgsI TTSAA 1 cut(s) 451
AjnI CCWGG 1 cut(s) 346
AluBI AGCT 4 cut(s) 71, 75, 87, 159
AluI AGCT 4 cut(s) 71, 75, 87, 159
AlwI GGATC 1 cut(s) 115
AoxI GGCC 2 cut(s) 290, 367
ApeKI GCWGC 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 368
AsuHPI GGTGA 2 cut(s) 111, 391
AsuNHI GCTAGC 1 cut(s) 71
BalI TGGCCA 1 cut(s) 292
BanI GGYRCC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 29
BccI CCATC 3 cut(s) 137, 259, 404
BciT130I CCWGG 1 cut(s) 348
BfaI CTAG 4 cut(s) 72, 84, 156, 565
BfmI CTRYAG 1 cut(s) 174
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
Bme1390I CCNGG 1 cut(s) 348
BmgT120I GGNCC 1 cut(s) 368
BmiI GGNNCC 2 cut(s) 181, 370
BmrFI CCNGG 1 cut(s) 348
BmrI ACTGGG 1 cut(s) 4
BmsI GCATC 1 cut(s) 544
BmtI GCTAGC 1 cut(s) 75
BmuI ACTGGG 1 cut(s) 4
BpmI CTGGAG 1 cut(s) 51
BsaJI CCNNGG 4 cut(s) 45, 346, 347, 558
BsaXI ACNNNNNCTCC 2 cut(s) 448, 478
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse118I RCCGGY 1 cut(s) 365
Bse1I ACTGG 2 cut(s) 10, 550
BseBI CCWGG 1 cut(s) 348
BseDI CCNNGG 4 cut(s) 45, 346, 347, 558
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMII CTCAG 1 cut(s) 393
BseNI ACTGG 2 cut(s) 10, 550
BseXI GCAGC 1 cut(s) 29
Bsh1236I CGCG 1 cut(s) 419
BshFI GGCC 2 cut(s) 292, 369
BshNI GGYRCC 1 cut(s) 179
BsiSI CCGG 1 cut(s) 366
BslI CCNNNNNNNGG 1 cut(s) 347
BsnI GGCC 2 cut(s) 292, 369
Bsp143I GATC 1 cut(s) 107
Bsp19I CCATGG 1 cut(s) 558
BspACI CCGC 6 cut(s) 209, 216, 222, 228, 363, 417
BspANI GGCC 2 cut(s) 292, 369
BspCNI CTCAG 1 cut(s) 392
BspFNI CGCG 1 cut(s) 419
BspLI GGNNCC 2 cut(s) 181, 370
BspOI GCTAGC 1 cut(s) 75
BspPI GGATC 1 cut(s) 115
BspT107I GGYRCC 1 cut(s) 179
BsrFI RCCGGY 1 cut(s) 365
BsrI ACTGG 2 cut(s) 10, 550
BssAI RCCGGY 1 cut(s) 365
BssECI CCNNGG 4 cut(s) 45, 346, 347, 558
BssMI GATC 1 cut(s) 107
BssT1I CCWWGG 2 cut(s) 45, 558
Bst2UI CCWGG 1 cut(s) 348
Bst4CI ACNGT 2 cut(s) 34, 243
BstC8I GCNNGC 3 cut(s) 73, 161, 367
BstDEI CTNAG 1 cut(s) 379
BstDSI CCRYGG 1 cut(s) 558
BstFNI CGCG 1 cut(s) 419
BstKTI GATC 1 cut(s) 110
BstMBI GATC 1 cut(s) 107
BstMWI GCNNNNNNNGC 2 cut(s) 14, 169
BstNI CCWGG 1 cut(s) 348
BstSCI CCNGG 1 cut(s) 346
BstSFI CTRYAG 1 cut(s) 174
BstUI CGCG 1 cut(s) 419
BstV1I GCAGC 1 cut(s) 29
BstX2I RGATCY 1 cut(s) 107
BstXI CCANNNNNNTGG 1 cut(s) 545
BstYI RGATCY 1 cut(s) 107
BsuRI GGCC 2 cut(s) 292, 369
BtgI CCRYGG 1 cut(s) 558
BtsI GCAGTG 1 cut(s) 154
BtsIMutI CAGTG 2 cut(s) 154, 543
Cac8I GCNNGC 3 cut(s) 73, 161, 367
Cfr10I RCCGGY 1 cut(s) 365
Cfr13I GGNCC 1 cut(s) 368
Csp6I GTAC 1 cut(s) 421
CviAII CATG 1 cut(s) 559
CviJI RGCY 9 cut(s) 20, 71, 75, 87, 159, 292, 369, 383, 442
CviKI_1 RGCY 9 cut(s) 20, 71, 75, 87, 159, 292, 369, 383, 442
CviQI GTAC 1 cut(s) 421
DdeI CTNAG 1 cut(s) 379
DpnI GATC 1 cut(s) 109
DpnII GATC 1 cut(s) 107
DraI TTTAAA 1 cut(s) 514
EaeI YGGCCR 1 cut(s) 290
Eco130I CCWWGG 2 cut(s) 45, 558
EcoRII CCWGG 1 cut(s) 346
EcoT14I CCWWGG 2 cut(s) 45, 558
ErhI CCWWGG 2 cut(s) 45, 558
FaeI CATG 1 cut(s) 562
FaiI YATR 6 cut(s) 176, 295, 324, 471, 496, 560
FatI CATG 1 cut(s) 558
Fnu4HI GCNGC 1 cut(s) 18
Fsp4HI GCNGC 1 cut(s) 18
FspBI CTAG 4 cut(s) 72, 84, 156, 565
GluI GCNGC 1 cut(s) 18
GsuI CTGGAG 1 cut(s) 51
HaeIII GGCC 2 cut(s) 292, 369
HapII CCGG 1 cut(s) 366
Hin1II CATG 1 cut(s) 562
HincII GTYRAC 1 cut(s) 59
HindII GTYRAC 1 cut(s) 59
HpaII CCGG 1 cut(s) 366
HphI GGTGA 2 cut(s) 111, 391
Hpy166II GTNNAC 2 cut(s) 59, 246
Hpy188I TCNGA 2 cut(s) 114, 427
Hpy188III TCNNGA 1 cut(s) 448
Hpy8I GTNNAC 2 cut(s) 59, 246
HpyAV CCTTC 2 cut(s) 132, 351
HpyCH4III ACNGT 2 cut(s) 34, 243
HpyCH4V TGCA 2 cut(s) 17, 25
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 169
HpyF3I CTNAG 1 cut(s) 379
Hsp92II CATG 1 cut(s) 562
KroI GCCGGC 1 cut(s) 365
KroNI GCCGGC 1 cut(s) 367
Kzo9I GATC 1 cut(s) 107
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 7 cut(s) 23, 81, 333, 360, 379, 513, 531
Lsp1109I GCAGC 1 cut(s) 29
LweI GCATC 1 cut(s) 544
MaeI CTAG 4 cut(s) 72, 84, 156, 565
MalI GATC 1 cut(s) 109
MboI GATC 1 cut(s) 107
MflI RGATCY 1 cut(s) 107
MlsI TGGCCA 1 cut(s) 292
MluCI AATT 1 cut(s) 96
MluNI TGGCCA 1 cut(s) 292
Mox20I TGGCCA 1 cut(s) 292
MroNI GCCGGC 1 cut(s) 365
MscI TGGCCA 1 cut(s) 292
MseI TTAA 1 cut(s) 513
Msp20I TGGCCA 1 cut(s) 292
MspI CCGG 1 cut(s) 366
MspR9I CCNGG 1 cut(s) 348
MvaI CCWGG 1 cut(s) 348
MvnI CGCG 1 cut(s) 419
MwoI GCNNNNNNNGC 2 cut(s) 14, 169
NaeI GCCGGC 1 cut(s) 367
NcoI CCATGG 1 cut(s) 558
NdeII GATC 1 cut(s) 107
NgoMIV GCCGGC 1 cut(s) 365
NheI GCTAGC 1 cut(s) 71
NlaIII CATG 1 cut(s) 562
NlaIV GGNNCC 2 cut(s) 181, 370
PasI CCCWGGG 1 cut(s) 347
PdiI GCCGGC 1 cut(s) 367
PkrI GCNGC 1 cut(s) 19
PsiI TTATAA 1 cut(s) 471
Psp6I CCWGG 1 cut(s) 346
PspGI CCWGG 1 cut(s) 346
PspN4I GGNNCC 2 cut(s) 181, 370
PspPI GGNCC 1 cut(s) 368
PsuI RGATCY 1 cut(s) 107
RsaI GTAC 1 cut(s) 422
RsaNI GTAC 1 cut(s) 421
SaqAI TTAA 1 cut(s) 513
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 1 cut(s) 107
Sau96I GGNCC 1 cut(s) 368
ScrFI CCNGG 1 cut(s) 348
SfaNI GCATC 1 cut(s) 544
SfcI CTRYAG 1 cut(s) 174
Sse9I AATT 1 cut(s) 96
SsiI CCGC 6 cut(s) 209, 216, 222, 228, 363, 417
SspI AATATT 1 cut(s) 284
SspMI CTAG 4 cut(s) 72, 84, 156, 565
StyD4I CCNGG 1 cut(s) 346
StyI CCWWGG 2 cut(s) 45, 558
TaaI ACNGT 2 cut(s) 34, 243
TaqI TCGA 2 cut(s) 374, 528
TasI AATT 1 cut(s) 96
Tru1I TTAA 1 cut(s) 513
Tru9I TTAA 1 cut(s) 513
TscAI CASTG 2 cut(s) 154, 550
TseI GCWGC 1 cut(s) 17
TspDTI ATGAA 2 cut(s) 41, 317
TspGWI ACGGA 1 cut(s) 156
TspRI CASTG 2 cut(s) 154, 550
XcmI CCANNNNNNNNNTGG 1 cut(s) 344
XspI CTAG 4 cut(s) 72, 84, 156, 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.