Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00466

Orthogroup ID

OG0019660

Physical Location & Seq

Genomic Coordinates Reverse (-)

54366 .. 55019

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G010860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCTCGGACTGTGCAAGCTTCCGCTCCCTCCTCCACCCCAGTCACAACCGCCTTTGTTCCACCACCACCCCCTCCACCATTTACCCACCTAGCTTCTTCATCTTATCAAACAAATGATGAGTCAGAACCTTTACACAGGGCTGAATTTCACAATTCCTTAGCTCTTCTTCAAGAAGAATTTCACCAAGCTATTGATGCAGTCAACCATAACCATTCCTCATTTCAAAATCACATTACTGCCCAACTTGCAGCTTTGCAAAGCACTATGGTGCAAGGTTTTACTCAACAACACCAACCCATCTATTCTGCACCTCCCTCCACTCCAGCTTCCACACCATCATTTTCCATACTTCCTCCACCTCATACACCGGCCAACATCCCATCTATCACTTTTGGTTCCATTTCAACACCTACCAATCCCAACTTAAAAGCAGCTCGTCAGCAGAAAACCCTCAACCGCAGACTCCTCGTCTCCACCGACGCCCCTCAACTCGAATCCATACAGTTGGATGATACGCCGTCGTTTGGAGAGCCTTCCTCCGTTAGAAAGCTCAGCTTCCCACCGGGCGGTTATGTCAAGTTACTGGGCTCCTGCAATGGTCTGGTATTTGTAGCTGTTGATAAGAAATTCTTTTATATCTGGAACCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

217

Amino Acids

23.55

Weight (kDa)

6.74

Isoelectric Point (pI)

61.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019660)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06281 FvH4_4g00101
rosa_chinensis	RchiOBHm_Chr1g0339791 RchiOBHm_Chr4g0426521
rosa_multiflora	Rmu_sc0007466.1_g000003
rosa_samantha	Rh6CG335600
rosa_wichuraiana	Rw0G010860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	26
AciI	CCGC	4 cut(s)	24, 51, 460, 570
AcoI	YGGCCR	1 cut(s)	372
AcsI	RAATTY	3 cut(s)	146, 179, 629
AcyI	GRCGYC	1 cut(s)	483
AfiI	CCNNNNNNNGG	2 cut(s)	527, 569
AgsI	TTSAA	3 cut(s)	173, 227, 408
AhdI	GACNNNNNGTC	1 cut(s)	470
AleI	CACNNNNGTG	1 cut(s)	269
Alw26I	GTCTC	1 cut(s)	478
AoxI	GGCC	1 cut(s)	372
ApeKI	GCWGC	2 cut(s)	251, 434
ApoI	RAATTY	3 cut(s)	146, 179, 629
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
Asp700I	GAANNNNTTC	1 cut(s)	180
AsuC2I	CCSGG	1 cut(s)	567
AsuHPI	GGTGA	1 cut(s)	176
BanII	GRGCYC	1 cut(s)	593
BbvI	GCAGC	2 cut(s)	263, 446
BccI	CCATC	3 cut(s)	308, 346, 391
BceAI	ACGGC	1 cut(s)	505
BcgI	CGANNNNNNTGC	2 cut(s)	451, 485
BcnI	CCSGG	1 cut(s)	567
BcoDI	GTCTC	1 cut(s)	478
BfaI	CTAG	1 cut(s)	92
BisI	GCNGC	2 cut(s)	252, 435
BlpI	GCTNAGC	1 cut(s)	554
BlsI	GCNGC	2 cut(s)	253, 436
Bme1390I	CCNGG	1 cut(s)	567
BmeRI	GACNNNNNGTC	1 cut(s)	470
BmiI	GGNNCC	3 cut(s)	400, 592, 647
BmrFI	CCNGG	1 cut(s)	567
BmrI	ACTGGG	2 cut(s)	35, 596
BmsI	GCATC	1 cut(s)	187
BmuI	ACTGGG	2 cut(s)	35, 596
BplI	GAGNNNNNCTC	2 cut(s)	524, 556
BpmI	CTGGAG	1 cut(s)	309
Bpu10I	CCTNAGC	1 cut(s)	160
Bpu1102I	GCTNAGC	1 cut(s)	554
BpuMI	CCSGG	1 cut(s)	567
BsaHI	GRCGYC	1 cut(s)	483
Bsc4I	CCNNNNNNNGG	2 cut(s)	527, 569
Bse118I	RCCGGY	1 cut(s)	370
Bse1I	ACTGG	2 cut(s)	41, 591
Bse3DI	GCAATG	1 cut(s)	604
BseGI	GGATG	2 cut(s)	378, 517
BseLI	CCNNNNNNNGG	2 cut(s)	527, 569
BseMI	GCAATG	1 cut(s)	604
BseMII	CTCAG	1 cut(s)	568
BseNI	ACTGG	2 cut(s)	41, 591
BseRI	GAGGAG	2 cut(s)	22, 458
BseXI	GCAGC	2 cut(s)	263, 446
BsgI	GTGCAG	1 cut(s)	294
BshFI	GGCC	1 cut(s)	374
BsiSI	CCGG	2 cut(s)	371, 566
BslI	CCNNNNNNNGG	2 cut(s)	527, 569
BsmAI	GTCTC	1 cut(s)	478
BsmBI	CGTCTC	1 cut(s)	478
BsnI	GGCC	1 cut(s)	374
Bsp1286I	GDGCHC	1 cut(s)	593
Bsp1720I	GCTNAGC	1 cut(s)	554
BspACI	CCGC	4 cut(s)	24, 51, 460, 570
BspANI	GGCC	1 cut(s)	374
BspCNI	CTCAG	1 cut(s)	567
BspLI	GGNNCC	3 cut(s)	400, 592, 647
BspQI	GCTCTTC	1 cut(s)	171
BsrBI	CCGCTC	1 cut(s)	26
BsrDI	GCAATG	1 cut(s)	604
BsrFI	RCCGGY	1 cut(s)	370
BsrI	ACTGG	2 cut(s)	41, 591
BssAI	RCCGGY	1 cut(s)	370
BssNI	GRCGYC	1 cut(s)	483
Bst4CI	ACNGT	2 cut(s)	13, 507
Bst6I	CTCTTC	1 cut(s)	171
BstACI	GRCGYC	1 cut(s)	483
BstC8I	GCNNGC	1 cut(s)	18
BstDEI	CTNAG	2 cut(s)	160, 554
BstF5I	GGATG	2 cut(s)	378, 517
BstMAI	GTCTC	1 cut(s)	478
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 248
BstSCI	CCNGG	1 cut(s)	565
BstV1I	GCAGC	2 cut(s)	263, 446
BstXI	CCANNNNNNTGG	1 cut(s)	508
BsuRI	GGCC	1 cut(s)	374
BtsCI	GGATG	2 cut(s)	378, 517
Cac8I	GCNNGC	1 cut(s)	18
Cfr10I	RCCGGY	1 cut(s)	370
CseI	GACGC	1 cut(s)	491
DdeI	CTNAG	2 cut(s)	160, 554
DriI	GACNNNNNGTC	1 cut(s)	470
EaeI	YGGCCR	1 cut(s)	372
Eam1104I	CTCTTC	1 cut(s)	171
Eam1105I	GACNNNNNGTC	1 cut(s)	470
EarI	CTCTTC	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	593
EcoT38I	GRGCYC	1 cut(s)	593
Esp3I	CGTCTC	1 cut(s)	478
FaiI	YATR	8 cut(s)	210, 269, 350, 366, 503, 576, 639, 652
FalI	AAGNNNNNCTT	4 cut(s)	542, 574, 617, 649
Fnu4HI	GCNGC	2 cut(s)	252, 435
FokI	GGATG	2 cut(s)	365, 524
FriOI	GRGCYC	1 cut(s)	593
Fsp4HI	GCNGC	2 cut(s)	252, 435
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	2 cut(s)	252, 435
GsuI	CTGGAG	1 cut(s)	309
HaeIII	GGCC	1 cut(s)	374
HapII	CCGG	2 cut(s)	371, 566
HgaI	GACGC	1 cut(s)	491
Hin1I	GRCGYC	1 cut(s)	483
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HindIII	AAGCTT	1 cut(s)	18
HinfI	GANTC	3 cut(s)	122, 465, 497
HpaII	CCGG	2 cut(s)	371, 566
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	2 cut(s)	9, 127
Hpy188III	TCNNGA	2 cut(s)	173, 643
Hpy8I	GTNNAC	1 cut(s)	205
Hpy99I	CGWCG	2 cut(s)	485, 526
HpyAV	CCTTC	1 cut(s)	546
HpyCH4III	ACNGT	2 cut(s)	13, 507
HpyCH4V	TGCA	7 cut(s)	16, 200, 251, 259, 274, 311, 597
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 248
HpyF3I	CTNAG	2 cut(s)	160, 554
Hsp92I	GRCGYC	1 cut(s)	483
LguI	GCTCTTC	1 cut(s)	171
LmnI	GCTCC	2 cut(s)	31, 596
LpnPI	CCDG	9 cut(s)	54, 124, 339, 384, 572, 579, 590, 607, 628
Lsp1109I	GCAGC	2 cut(s)	263, 446
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	1 cut(s)	92
MaeIII	GTNAC	2 cut(s)	43, 582
MbiI	CCGCTC	1 cut(s)	26
MboII	GAAGA	4 cut(s)	90, 158, 161, 188
MhlI	GDGCHC	1 cut(s)	593
MluCI	AATT	4 cut(s)	146, 154, 179, 629
MlyI	GAGTC	2 cut(s)	131, 459
MmeI	TCCRAC	1 cut(s)	489
MroXI	GAANNNNTTC	1 cut(s)	180
MseI	TTAA	1 cut(s)	428
MslI	CAYNNNNRTG	1 cut(s)	269
MspI	CCGG	2 cut(s)	371, 566
MspR9I	CCNGG	1 cut(s)	567
MwoI	GCNNNNNNNGC	2 cut(s)	197, 248
NciI	CCSGG	1 cut(s)	567
NlaIV	GGNNCC	3 cut(s)	400, 592, 647
NmuCI	GTSAC	1 cut(s)	43
OliI	CACNNNNGTG	1 cut(s)	269
PciSI	GCTCTTC	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	1 cut(s)	477
PdmI	GAANNNNTTC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	497
PkrI	GCNGC	2 cut(s)	253, 436
PleI	GAGTC	2 cut(s)	130, 459
PpsI	GAGTC	2 cut(s)	130, 459
PspN4I	GGNNCC	3 cut(s)	400, 592, 647
RseI	CAYNNNNRTG	1 cut(s)	269
SapI	GCTCTTC	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	428
SatI	GCNGC	2 cut(s)	252, 435
SchI	GAGTC	2 cut(s)	131, 459
ScrFI	CCNGG	1 cut(s)	567
SduI	GDGCHC	1 cut(s)	593
SfaNI	GCATC	1 cut(s)	187
SmiMI	CAYNNNNRTG	1 cut(s)	269
Sse9I	AATT	4 cut(s)	146, 154, 179, 629
SsiI	CCGC	4 cut(s)	24, 51, 460, 570
SspMI	CTAG	1 cut(s)	92
StyD4I	CCNGG	1 cut(s)	565
TaaI	ACNGT	2 cut(s)	13, 507
TaqI	TCGA	1 cut(s)	495
TasI	AATT	4 cut(s)	146, 154, 179, 629
TfiI	GAWTC	1 cut(s)	497
Tru1I	TTAA	1 cut(s)	428
Tru9I	TTAA	1 cut(s)	428
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	2 cut(s)	251, 434
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	1 cut(s)	90
TspGWI	ACGGA	1 cut(s)	532
XapI	RAATTY	3 cut(s)	146, 179, 629
XmnI	GAANNNNTTC	1 cut(s)	180
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.