Rmu_sc0007466.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007466.1
OG0019660
Physical Location & Seq
Forward (+)
10403 .. 11089
687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007466.1_g000003.1.cds

Sequence Viewer

Length: 687 bp
atgaccctctgtggcctgcaaaaccctaccccatccatccccttctcctcctccctcgtcgacccaccaccctttaccccacctccgctccaccagccctcctcttccacctccgtatctgatacccaagcactgaacctccaaaacaccattgagttccttcaaaaccagaatgaagccctgcacacttccttcgaatcctttcaaaactgtatgtcagctcaattcgcagccctccaaaacaccgtggtggcatccttggttcaccgtcaacaacccctagtgagcactacctgtagctcccctgcctctagcacccctgcatctggctccccacaaatcatatttggctccctcaactccgcctctcccatcatcacagcgccaggctccaccacaggtacaaccagctccatccctctatcctctagcccaatcacaccaaagtctcaaccaaacccacccgcacagtctactccaccaccacaatactcctggccttacccaccacacaattacccccaaccaaccatcagcccactttctcctcctcccggtttccactatgtccctggtccttcaagctcagccatttactccaccataacctcctccatcagcaacccggttcactccgaaccacaacccattcctccctacagactacttcagacatcgtacccgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

24.04

Weight (kDa)

5.99

Isoelectric Point (pI)

75.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019660)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06281 FvH4_4g00101
rosa_chinensis RchiOBHm_Chr1g0339791 RchiOBHm_Chr4g0426521
rosa_multiflora Rmu_sc0007466.1_g000003
rosa_samantha Rh6CG335600
rosa_wichuraiana Rw0G010860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 88
AccI GTMKAC 2 cut(s) 60, 473
AciI CCGC 3 cut(s) 86, 363, 465
AcuI CTGAAG 1 cut(s) 653
AfaI GTAC 2 cut(s) 403, 680
AfiI CCNNNNNNNGG 2 cut(s) 326, 554
AgsI TTSAA 3 cut(s) 164, 206, 582
AjnI CCWGG 3 cut(s) 385, 494, 571
AleI CACNNNNGTG 1 cut(s) 248
AluBI AGCT 4 cut(s) 221, 300, 411, 585
AluI AGCT 4 cut(s) 221, 300, 411, 585
Alw21I GWGCWC 1 cut(s) 290
Alw26I GTCTC 1 cut(s) 453
AoxI GGCC 2 cut(s) 13, 497
ApeKI GCWGC 1 cut(s) 230
Asp700I GAANNNNTTC 1 cut(s) 201
AspLEI GCGC 1 cut(s) 385
AspS9I GGNCC 1 cut(s) 575
AsuC2I CCSGG 2 cut(s) 555, 626
AsuHPI GGTGA 1 cut(s) 257
AsuII TTCGAA 1 cut(s) 195
AvaII GGWCC 1 cut(s) 575
BaeI ACNNNNGTAYC 2 cut(s) 99, 132
Bbv12I GWGCWC 1 cut(s) 290
BbvI GCAGC 1 cut(s) 242
BccI CCATC 6 cut(s) 40, 44, 380, 422, 539, 623
BciT130I CCWGG 3 cut(s) 387, 496, 573
BcnI CCSGG 2 cut(s) 555, 626
BcoDI GTCTC 1 cut(s) 453
BfaI CTAG 3 cut(s) 281, 312, 429
BfmI CTRYAG 2 cut(s) 295, 658
BfoI RGCGCY 1 cut(s) 386
BisI GCNGC 1 cut(s) 231
BlpI GCTNAGC 1 cut(s) 586
BlsI GCNGC 1 cut(s) 232
Bme1390I CCNGG 5 cut(s) 387, 496, 555, 573, 626
Bme18I GGWCC 1 cut(s) 575
BmgT120I GGNCC 1 cut(s) 575
BmiI GGNNCC 3 cut(s) 331, 352, 391
BmrFI CCNGG 5 cut(s) 387, 496, 555, 573, 626
BmsI GCATC 2 cut(s) 263, 332
Bpu1102I GCTNAGC 1 cut(s) 586
Bpu14I TTCGAA 1 cut(s) 195
BpuMI CCSGG 2 cut(s) 555, 626
BsaJI CCNNGG 3 cut(s) 246, 258, 571
BsaXI ACNNNNNCTCC 8 cut(s) 67, 72, 83, 97, 102, 113, 123, 153
Bsc4I CCNNNNNNNGG 2 cut(s) 326, 554
BseBI CCWGG 3 cut(s) 387, 496, 573
BseDI CCNNGG 3 cut(s) 246, 258, 571
BseGI GGATG 4 cut(s) 32, 36, 254, 414
BseLI CCNNNNNNNGG 2 cut(s) 326, 554
BseMII CTCAG 1 cut(s) 600
BseRI GAGGAG 6 cut(s) 37, 40, 91, 537, 540, 601
BseXI GCAGC 1 cut(s) 242
BsgI GTGCAG 1 cut(s) 167
BshFI GGCC 2 cut(s) 15, 499
BsiHKAI GWGCWC 1 cut(s) 290
BsiSI CCGG 2 cut(s) 555, 626
BslFI GGGAC 1 cut(s) 554
BslI CCNNNNNNNGG 2 cut(s) 326, 554
BsmAI GTCTC 1 cut(s) 453
BsmFI GGGAC 1 cut(s) 554
BsnI GGCC 2 cut(s) 15, 499
Bsp119I TTCGAA 1 cut(s) 195
Bsp1286I GDGCHC 1 cut(s) 290
Bsp1720I GCTNAGC 1 cut(s) 586
BspACI CCGC 3 cut(s) 86, 363, 465
BspANI GGCC 2 cut(s) 15, 499
BspCNI CTCAG 1 cut(s) 599
BspLI GGNNCC 3 cut(s) 331, 352, 391
BspT104I TTCGAA 1 cut(s) 195
BsrBI CCGCTC 1 cut(s) 88
BssECI CCNNGG 3 cut(s) 246, 258, 571
BssT1I CCWWGG 1 cut(s) 258
Bst2UI CCWGG 3 cut(s) 387, 496, 573
Bst4CI ACNGT 4 cut(s) 212, 247, 269, 471
Bst6I CTCTTC 1 cut(s) 109
BstBI TTCGAA 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 17
BstDEI CTNAG 1 cut(s) 586
BstDSI CCRYGG 1 cut(s) 246
BstF5I GGATG 4 cut(s) 32, 36, 254, 414
BstH2I RGCGCY 1 cut(s) 386
BstHHI GCGC 1 cut(s) 385
BstMAI GTCTC 1 cut(s) 453
BstMWI GCNNNNNNNGC 2 cut(s) 94, 227
BstNI CCWGG 3 cut(s) 387, 496, 573
BstSCI CCNGG 5 cut(s) 385, 494, 553, 571, 624
BstSFI CTRYAG 2 cut(s) 295, 658
BstV1I GCAGC 1 cut(s) 242
BsuRI GGCC 2 cut(s) 15, 499
BtgI CCRYGG 1 cut(s) 246
BtsCI GGATG 4 cut(s) 32, 36, 254, 414
BtsIMutI CAGTG 1 cut(s) 131
Cac8I GCNNGC 1 cut(s) 17
CfoI GCGC 1 cut(s) 385
Cfr13I GGNCC 1 cut(s) 575
Csp6I GTAC 2 cut(s) 402, 679
CviQI GTAC 2 cut(s) 402, 679
DdeI CTNAG 1 cut(s) 586
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
EciI GGCGGA 1 cut(s) 352
Eco130I CCWWGG 1 cut(s) 258
Eco47I GGWCC 1 cut(s) 575
Eco57I CTGAAG 1 cut(s) 653
EcoRII CCWGG 3 cut(s) 385, 494, 571
EcoT14I CCWWGG 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 258
FaiI YATR 4 cut(s) 215, 344, 567, 605
FaqI GGGAC 1 cut(s) 554
FauI CCCGC 1 cut(s) 472
FblI GTMKAC 2 cut(s) 60, 473
Fnu4HI GCNGC 1 cut(s) 231
FokI GGATG 4 cut(s) 19, 23, 241, 401
Fsp4HI GCNGC 1 cut(s) 231
FspBI CTAG 3 cut(s) 281, 312, 429
GlaI GCGC 1 cut(s) 384
GluI GCNGC 1 cut(s) 231
HaeII RGCGCY 1 cut(s) 386
HaeIII GGCC 2 cut(s) 15, 499
HapII CCGG 2 cut(s) 555, 626
HhaI GCGC 1 cut(s) 385
Hin6I GCGC 1 cut(s) 383
HinP1I GCGC 1 cut(s) 383
HincII GTYRAC 2 cut(s) 61, 272
HindII GTYRAC 2 cut(s) 61, 272
HinfI GANTC 1 cut(s) 197
HpaII CCGG 2 cut(s) 555, 626
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 5 cut(s) 61, 265, 272, 474, 631
Hpy188I TCNGA 3 cut(s) 121, 637, 672
Hpy8I GTNNAC 5 cut(s) 61, 265, 272, 474, 631
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 4 cut(s) 52, 170, 202, 588
HpyCH4III ACNGT 4 cut(s) 212, 247, 269, 471
HpyCH4V TGCA 3 cut(s) 19, 184, 323
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 227
HpyF3I CTNAG 1 cut(s) 586
HspAI GCGC 1 cut(s) 383
LmnI GCTCC 6 cut(s) 93, 305, 335, 356, 395, 416
Lsp1109I GCAGC 1 cut(s) 242
LweI GCATC 2 cut(s) 263, 332
MaeI CTAG 3 cut(s) 281, 312, 429
MbiI CCGCTC 1 cut(s) 88
MboII GAAGA 1 cut(s) 96
MhlI GDGCHC 1 cut(s) 290
MluCI AATT 2 cut(s) 224, 514
MroXI GAANNNNTTC 1 cut(s) 201
MslI CAYNNNNRTG 1 cut(s) 248
MspI CCGG 2 cut(s) 555, 626
MspR9I CCNGG 5 cut(s) 387, 496, 555, 573, 626
MvaI CCWGG 3 cut(s) 387, 496, 573
MwoI GCNNNNNNNGC 2 cut(s) 94, 227
NciI CCSGG 2 cut(s) 555, 626
NlaIV GGNNCC 3 cut(s) 331, 352, 391
NspV TTCGAA 1 cut(s) 195
OliI CACNNNNGTG 1 cut(s) 248
PdmI GAANNNNTTC 1 cut(s) 201
PfeI GAWTC 1 cut(s) 197
PkrI GCNGC 1 cut(s) 232
Psp6I CCWGG 3 cut(s) 385, 494, 571
PspGI CCWGG 3 cut(s) 385, 494, 571
PspN4I GGNNCC 3 cut(s) 331, 352, 391
PspPI GGNCC 1 cut(s) 575
RsaI GTAC 2 cut(s) 403, 680
RsaNI GTAC 2 cut(s) 402, 679
RseI CAYNNNNRTG 1 cut(s) 248
SalI GTCGAC 1 cut(s) 59
SatI GCNGC 1 cut(s) 231
Sau96I GGNCC 1 cut(s) 575
ScrFI CCNGG 5 cut(s) 387, 496, 555, 573, 626
SduI GDGCHC 1 cut(s) 290
SfaNI GCATC 2 cut(s) 263, 332
SfcI CTRYAG 2 cut(s) 295, 658
SfuI TTCGAA 1 cut(s) 195
SinI GGWCC 1 cut(s) 575
SmiMI CAYNNNNRTG 1 cut(s) 248
Sse9I AATT 2 cut(s) 224, 514
SsiI CCGC 3 cut(s) 86, 363, 465
SspMI CTAG 3 cut(s) 281, 312, 429
StyD4I CCNGG 5 cut(s) 385, 494, 553, 571, 624
StyI CCWWGG 1 cut(s) 258
TaaI ACNGT 4 cut(s) 212, 247, 269, 471
TaqI TCGA 2 cut(s) 60, 195
TasI AATT 2 cut(s) 224, 514
TfiI GAWTC 1 cut(s) 197
TscAI CASTG 1 cut(s) 138
TseI GCWGC 1 cut(s) 230
TspDTI ATGAA 1 cut(s) 189
TspGWI ACGGA 1 cut(s) 103
TspRI CASTG 1 cut(s) 138
VpaK11BI GGWCC 1 cut(s) 575
XcmI CCANNNNNNNNNTGG 2 cut(s) 492, 569
XmiI GTMKAC 2 cut(s) 60, 473
XmnI GAANNNNTTC 1 cut(s) 201
XspI CTAG 3 cut(s) 281, 312, 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.