FvH4_2g07020

peptidase inhibitor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015533
Physical Location & Seq
Reverse (-)
5778296 .. 5779079
784 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g07020.t1

Sequence Viewer

Length: 495 bp
ATGGAATTCACCAAGCTCGTTTTGCTAGCCATCTGCTCCATCGTCTTAATCTCAGTTCATATTTCTCCGGCCAATGCTGATGATCCATTGGCAGCTGAGTTTGTCGAATTACACAACAAATACCGTGCAATGGACAATGTTGGTCCGGTTACATGGGACGAAACAGTCGCAGACTACGCTAGAAACTATGCCAACACAAAAATTGAGACTTGTGAAATGGTGCATTCCCATGGACAATACGGAGAATGCTTAGCCATGGGAAGCTATGACGTTCAACCGGAGGAGGCGGTGAAGATGTGGGCCGACGAGAAGCAATTCTATGACCATGCCGCCAATACTTGTGCTCCCGGCCAGGTTTGCGGCCACTATACTCAAGTGGTCTGGGCAAATTCAACTAAAATTGGTTGTGCTAAGGTTCGTTGCGCCAATGGAGGTACTTTTATCATCTGCAACTACGATCCTCCTGGTAACTATGTTGGCGAGAAACCTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

165

Amino Acids

18.12

Weight (kDa)

4.97

Isoelectric Point (pI)

34.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 35 - 152 2.6e-22 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 164
AciI CCGC 3 cut(s) 287, 330, 360
AclWI GGATC 2 cut(s) 77, 452
AcoI YGGCCR 3 cut(s) 69, 349, 361
AcsI RAATTY 2 cut(s) 5, 388
AfaI GTAC 1 cut(s) 436
AfiI CCNNNNNNNGG 1 cut(s) 130
AgsI TTSAA 2 cut(s) 275, 393
AjnI CCWGG 2 cut(s) 351, 463
AluBI AGCT 3 cut(s) 16, 95, 264
AluI AGCT 3 cut(s) 16, 95, 264
Alw21I GWGCWC 1 cut(s) 346
Alw26I GTCTC 1 cut(s) 200
AlwI GGATC 2 cut(s) 77, 452
AoxI GGCC 4 cut(s) 69, 300, 349, 361
ApeKI GCWGC 1 cut(s) 92
ApoI RAATTY 2 cut(s) 5, 388
Asp700I GAANNNNTTC 2 cut(s) 314, 488
AspLEI GCGC 1 cut(s) 425
AspS9I GGNCC 2 cut(s) 143, 300
AsuC2I CCSGG 1 cut(s) 348
AsuHPI GGTGA 1 cut(s) 301
AsuNHI GCTAGC 1 cut(s) 25
AvaII GGWCC 1 cut(s) 143
Bbv12I GWGCWC 1 cut(s) 346
BbvI GCAGC 1 cut(s) 104
BccI CCATC 2 cut(s) 38, 47
BciT130I CCWGG 2 cut(s) 353, 465
BcnI CCSGG 1 cut(s) 348
BcoDI GTCTC 1 cut(s) 200
BfaI CTAG 3 cut(s) 26, 180, 493
BisI GCNGC 3 cut(s) 93, 330, 361
BlpI GCTNAGC 1 cut(s) 250
BlsI GCNGC 3 cut(s) 94, 331, 362
Bme1390I CCNGG 3 cut(s) 348, 353, 465
Bme18I GGWCC 1 cut(s) 143
BmgT120I GGNCC 2 cut(s) 143, 300
BmrFI CCNGG 3 cut(s) 348, 353, 465
BmtI GCTAGC 1 cut(s) 29
Bpu10I CCTNAGC 1 cut(s) 411
Bpu1102I GCTNAGC 1 cut(s) 250
BpuEI CTTGAG 1 cut(s) 357
BpuMI CCSGG 1 cut(s) 348
BsaJI CCNNGG 2 cut(s) 229, 255
BsaWI WCCGGW 2 cut(s) 145, 277
BsaXI ACNNNNNCTCC 2 cut(s) 328, 358
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse3DI GCAATG 1 cut(s) 135
BseBI CCWGG 2 cut(s) 353, 465
BseDI CCNNGG 2 cut(s) 229, 255
BseLI CCNNNNNNNGG 1 cut(s) 130
BseMI GCAATG 1 cut(s) 135
BseMII CTCAG 2 cut(s) 66, 87
BseRI GAGGAG 1 cut(s) 296
BseXI GCAGC 1 cut(s) 104
BshFI GGCC 4 cut(s) 71, 302, 351, 363
BsiHKAI GWGCWC 1 cut(s) 346
BsiSI CCGG 4 cut(s) 68, 146, 278, 348
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 130
BsmAI GTCTC 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 170
BsmI GAATGC 2 cut(s) 223, 251
BsnI GGCC 4 cut(s) 71, 302, 351, 363
Bsp1286I GDGCHC 1 cut(s) 346
Bsp143I GATC 2 cut(s) 82, 457
Bsp1720I GCTNAGC 1 cut(s) 250
Bsp19I CCATGG 2 cut(s) 229, 255
BspACI CCGC 3 cut(s) 287, 330, 360
BspANI GGCC 4 cut(s) 71, 302, 351, 363
BspCNI CTCAG 2 cut(s) 65, 88
BspOI GCTAGC 1 cut(s) 29
BspPI GGATC 2 cut(s) 77, 452
BsrDI GCAATG 1 cut(s) 135
BssECI CCNNGG 2 cut(s) 229, 255
BssMI GATC 2 cut(s) 82, 457
BssT1I CCWWGG 2 cut(s) 229, 255
Bst2UI CCWGG 2 cut(s) 353, 465
Bst4CI ACNGT 2 cut(s) 125, 166
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 4 cut(s) 52, 96, 250, 411
BstDSI CCRYGG 2 cut(s) 229, 255
BstHHI GCGC 1 cut(s) 425
BstKTI GATC 2 cut(s) 85, 460
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 2 cut(s) 82, 457
BstMWI GCNNNNNNNGC 3 cut(s) 22, 176, 357
BstNI CCWGG 2 cut(s) 353, 465
BstSCI CCNGG 3 cut(s) 346, 351, 463
BstV1I GCAGC 1 cut(s) 104
BsuRI GGCC 4 cut(s) 71, 302, 351, 363
BtgI CCRYGG 2 cut(s) 229, 255
Cac8I GCNNGC 1 cut(s) 27
CfoI GCGC 1 cut(s) 425
Cfr13I GGNCC 2 cut(s) 143, 300
Csp6I GTAC 1 cut(s) 435
CviAII CATG 4 cut(s) 153, 230, 256, 326
CviJI RGCY 9 cut(s) 16, 29, 71, 95, 254, 264, 302, 351, 363
CviKI_1 RGCY 9 cut(s) 16, 29, 71, 95, 254, 264, 302, 351, 363
CviQI GTAC 1 cut(s) 435
DdeI CTNAG 4 cut(s) 52, 96, 250, 411
DpnI GATC 2 cut(s) 84, 459
DpnII GATC 2 cut(s) 82, 457
DrdI GACNNNNNNGTC 1 cut(s) 164
DseDI GACNNNNNNGTC 1 cut(s) 164
EaeI YGGCCR 3 cut(s) 69, 349, 361
Eco130I CCWWGG 2 cut(s) 229, 255
Eco47I GGWCC 1 cut(s) 143
EcoRI GAATTC 1 cut(s) 5
EcoRII CCWGG 2 cut(s) 351, 463
EcoT14I CCWWGG 2 cut(s) 229, 255
ErhI CCWWGG 2 cut(s) 229, 255
FaeI CATG 4 cut(s) 156, 233, 259, 329
FaqI GGGAC 1 cut(s) 170
FatI CATG 4 cut(s) 152, 229, 255, 325
Fnu4HI GCNGC 3 cut(s) 93, 330, 361
Fsp4HI GCNGC 3 cut(s) 93, 330, 361
FspBI CTAG 3 cut(s) 26, 180, 493
GlaI GCGC 1 cut(s) 424
GluI GCNGC 3 cut(s) 93, 330, 361
HaeIII GGCC 4 cut(s) 71, 302, 351, 363
HapII CCGG 4 cut(s) 68, 146, 278, 348
HhaI GCGC 1 cut(s) 425
Hin1II CATG 4 cut(s) 156, 233, 259, 329
Hin6I GCGC 1 cut(s) 423
HinP1I GCGC 1 cut(s) 423
HpaII CCGG 4 cut(s) 68, 146, 278, 348
HphI GGTGA 1 cut(s) 301
Hpy99I CGWCG 1 cut(s) 308
HpyCH4III ACNGT 2 cut(s) 125, 166
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 3 cut(s) 128, 223, 450
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 176, 357
HpyF3I CTNAG 4 cut(s) 52, 96, 250, 411
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 4 cut(s) 156, 233, 259, 329
HspAI GCGC 1 cut(s) 423
Kzo9I GATC 2 cut(s) 82, 457
LmnI GCTCC 2 cut(s) 41, 349
LpnPI CCDG 9 cut(s) 81, 159, 291, 338, 361, 365, 367, 450, 477
Lsp1109I GCAGC 1 cut(s) 104
MaeI CTAG 3 cut(s) 26, 180, 493
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 2 cut(s) 148, 467
MalI GATC 2 cut(s) 84, 459
MboI GATC 2 cut(s) 82, 457
MboII GAAGA 1 cut(s) 304
MhlI GDGCHC 1 cut(s) 346
MluCI AATT 6 cut(s) 5, 107, 201, 314, 388, 399
MnlI CCTC 4 cut(s) 274, 277, 425, 471
MroXI GAANNNNTTC 2 cut(s) 314, 488
MseI TTAA 1 cut(s) 47
MslI CAYNNNNRTG 1 cut(s) 228
MspA1I CMGCKG 1 cut(s) 95
MspI CCGG 4 cut(s) 68, 146, 278, 348
MspR9I CCNGG 3 cut(s) 348, 353, 465
Mva1269I GAATGC 2 cut(s) 223, 251
MvaI CCWGG 2 cut(s) 353, 465
MwoI GCNNNNNNNGC 3 cut(s) 22, 176, 357
NciI CCSGG 1 cut(s) 348
NcoI CCATGG 2 cut(s) 229, 255
NdeII GATC 2 cut(s) 82, 457
NheI GCTAGC 1 cut(s) 25
NlaIII CATG 4 cut(s) 156, 233, 259, 329
PctI GAATGC 2 cut(s) 223, 251
PdmI GAANNNNTTC 2 cut(s) 314, 488
PkrI GCNGC 3 cut(s) 94, 331, 362
Psp6I CCWGG 2 cut(s) 351, 463
PspGI CCWGG 2 cut(s) 351, 463
PspPI GGNCC 2 cut(s) 143, 300
PvuII CAGCTG 1 cut(s) 95
RsaI GTAC 1 cut(s) 436
RsaNI GTAC 1 cut(s) 435
RseI CAYNNNNRTG 1 cut(s) 228
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 3 cut(s) 93, 330, 361
Sau3AI GATC 2 cut(s) 82, 457
Sau96I GGNCC 2 cut(s) 143, 300
ScrFI CCNGG 3 cut(s) 348, 353, 465
SduI GDGCHC 1 cut(s) 346
SetI ASST 8 cut(s) 18, 97, 266, 273, 357, 417, 436, 490
SinI GGWCC 1 cut(s) 143
SmiMI CAYNNNNRTG 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 372
SmoI CTYRAG 1 cut(s) 372
Sse9I AATT 6 cut(s) 5, 107, 201, 314, 388, 399
SsiI CCGC 3 cut(s) 287, 330, 360
SspMI CTAG 3 cut(s) 26, 180, 493
StyD4I CCNGG 3 cut(s) 346, 351, 463
StyI CCWWGG 2 cut(s) 229, 255
TaaI ACNGT 2 cut(s) 125, 166
TaiI ACGT 1 cut(s) 273
TaqI TCGA 1 cut(s) 105
TasI AATT 6 cut(s) 5, 107, 201, 314, 388, 399
TauI GCSGC 2 cut(s) 332, 363
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TseI GCWGC 1 cut(s) 92
TspDTI ATGAA 1 cut(s) 47
TspGWI ACGGA 1 cut(s) 255
VpaK11BI GGWCC 1 cut(s) 143
XapI RAATTY 2 cut(s) 5, 388
XmnI GAANNNNTTC 2 cut(s) 314, 488
XspI CTAG 3 cut(s) 26, 180, 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.