Rroxscaffold_7G00214020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015533
Physical Location & Seq
Reverse (-)
64526038 .. 64527743
1706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00214020.1

Sequence Viewer

Length: 360 bp
ATGGGCTCTTACAACATGAAACCTGCAGAGGCGGTGAAGCGTGGGCAGATGAGAAGAAATACTATGACCATGCCTCCAATACATGTGCTGAAGGCCAGGTATGCGGCCACTATACTCAGTGGTCTGGGCAAAATCAACCCACATTGGGTGTGCCAAGGTTCATTGCAAGAATGGAGCTTAAAGTTCTTGCCTTCCCGACACACCGAGCTTAACGCTTTTGCTTCTTGGCACCTCCGAGCTTCACGCTCTTACCTTCCTAGCACCTCCAAACGTCACGCTCTTGCTTTTCGTCATACCGAGCTCGACGCTTACGCCTCACCAACATTTCCCAAGCTTTACACTAATACCTTCTTGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.56

Weight (kDa)

10.44

Isoelectric Point (pI)

57.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 31
AccB1I GGYRCC 1 cut(s) 228
AciI CCGC 2 cut(s) 32, 104
AcoI YGGCCR 1 cut(s) 105
AcuI CTGAAG 1 cut(s) 110
AfiI CCNNNNNNNGG 1 cut(s) 145
AflIII ACRYGT 1 cut(s) 82
AjnI CCWGG 1 cut(s) 95
AluBI AGCT 5 cut(s) 177, 208, 239, 301, 334
AluI AGCT 5 cut(s) 177, 208, 239, 301, 334
Alw21I GWGCWC 1 cut(s) 303
AoxI GGCC 2 cut(s) 93, 105
AsuHPI GGTGA 2 cut(s) 46, 309
BanI GGYRCC 1 cut(s) 228
BanII GRGCYC 2 cut(s) 8, 303
Bbv12I GWGCWC 1 cut(s) 303
BciT130I CCWGG 1 cut(s) 97
BfaI CTAG 1 cut(s) 258
BfmI CTRYAG 1 cut(s) 24
BfuAI ACCTGC 1 cut(s) 31
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
Bme1390I CCNGG 1 cut(s) 97
BmiI GGNNCC 1 cut(s) 230
BmrFI CCNGG 1 cut(s) 97
BsaJI CCNNGG 1 cut(s) 154
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bsc4I CCNNNNNNNGG 1 cut(s) 145
Bse3DI GCAATG 1 cut(s) 161
BseBI CCWGG 1 cut(s) 97
BseDI CCNNGG 1 cut(s) 154
BseLI CCNNNNNNNGG 1 cut(s) 145
BseMI GCAATG 1 cut(s) 161
BseMII CTCAG 1 cut(s) 130
BshFI GGCC 2 cut(s) 95, 107
BshNI GGYRCC 1 cut(s) 228
BsiHKAI GWGCWC 1 cut(s) 303
BslI CCNNNNNNNGG 1 cut(s) 145
BsnI GGCC 2 cut(s) 95, 107
Bsp1286I GDGCHC 2 cut(s) 8, 303
BspACI CCGC 2 cut(s) 32, 104
BspANI GGCC 2 cut(s) 95, 107
BspCNI CTCAG 1 cut(s) 129
BspLI GGNNCC 1 cut(s) 230
BspMAI CTGCAG 1 cut(s) 28
BspMI ACCTGC 1 cut(s) 31
BspT107I GGYRCC 1 cut(s) 228
BsrDI GCAATG 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 154
BssT1I CCWWGG 1 cut(s) 154
Bst2UI CCWGG 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 116
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNI CCWGG 1 cut(s) 97
BstNSI RCATGY 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 95
BstSFI CTRYAG 1 cut(s) 24
BsuRI GGCC 2 cut(s) 95, 107
BtsIMutI CAGTG 1 cut(s) 124
BveI ACCTGC 1 cut(s) 31
CseI GACGC 1 cut(s) 314
CviAII CATG 3 cut(s) 16, 70, 83
CviJI RGCY 8 cut(s) 6, 95, 107, 177, 208, 239, 301, 334
CviKI_1 RGCY 8 cut(s) 6, 95, 107, 177, 208, 239, 301, 334
DdeI CTNAG 1 cut(s) 116
EaeI YGGCCR 1 cut(s) 105
Ecl136II GAGCTC 1 cut(s) 301
Eco130I CCWWGG 1 cut(s) 154
Eco24I GRGCYC 2 cut(s) 8, 303
Eco53kI GAGCTC 1 cut(s) 301
Eco57I CTGAAG 1 cut(s) 110
EcoICRI GAGCTC 1 cut(s) 301
EcoRII CCWGG 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 154
EcoT38I GRGCYC 2 cut(s) 8, 303
ErhI CCWWGG 1 cut(s) 154
FaeI CATG 3 cut(s) 19, 73, 86
FaiI YATR 8 cut(s) 17, 65, 71, 84, 102, 113, 294, 358
FatI CATG 3 cut(s) 15, 69, 82
Fnu4HI GCNGC 1 cut(s) 105
FriOI GRGCYC 2 cut(s) 8, 303
Fsp4HI GCNGC 1 cut(s) 105
FspBI CTAG 1 cut(s) 258
GluI GCNGC 1 cut(s) 105
HaeIII GGCC 2 cut(s) 95, 107
HgaI GACGC 1 cut(s) 314
Hin1II CATG 3 cut(s) 19, 73, 86
HindIII AAGCTT 1 cut(s) 332
HphI GGTGA 2 cut(s) 46, 309
Hpy188I TCNGA 1 cut(s) 236
Hpy188III TCNNGA 1 cut(s) 195
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 4 cut(s) 85, 201, 263, 358
HpyCH4IV ACGT 1 cut(s) 271
HpyCH4V TGCA 2 cut(s) 26, 166
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 1 cut(s) 116
HpySE526I ACGT 1 cut(s) 271
Hsp92II CATG 3 cut(s) 19, 73, 86
LmnI GCTCC 1 cut(s) 174
LpnPI CCDG 4 cut(s) 36, 82, 109, 110
MaeI CTAG 1 cut(s) 258
MaeII ACGT 1 cut(s) 271
MaeIII GTNAC 1 cut(s) 272
MboII GAAGA 1 cut(s) 66
MhlI GDGCHC 2 cut(s) 8, 303
MnlI CCTC 5 cut(s) 22, 84, 242, 274, 325
MseI TTAA 2 cut(s) 179, 210
MspR9I CCNGG 1 cut(s) 97
MvaI CCWGG 1 cut(s) 97
MwoI GCNNNNNNNGC 1 cut(s) 101
NlaIII CATG 3 cut(s) 19, 73, 86
NlaIV GGNNCC 1 cut(s) 230
NmuCI GTSAC 1 cut(s) 272
NspI RCATGY 1 cut(s) 86
PciI ACATGT 1 cut(s) 82
PkrI GCNGC 1 cut(s) 106
PscI ACATGT 1 cut(s) 82
Psp124BI GAGCTC 1 cut(s) 303
Psp6I CCWGG 1 cut(s) 95
PspGI CCWGG 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 230
PstI CTGCAG 1 cut(s) 28
SacI GAGCTC 1 cut(s) 303
SaqAI TTAA 2 cut(s) 179, 210
SatI GCNGC 1 cut(s) 105
ScrFI CCNGG 1 cut(s) 97
SduI GDGCHC 2 cut(s) 8, 303
SfcI CTRYAG 1 cut(s) 24
SsiI CCGC 2 cut(s) 32, 104
SspMI CTAG 1 cut(s) 258
SstI GAGCTC 1 cut(s) 303
StyD4I CCNGG 1 cut(s) 95
StyI CCWWGG 1 cut(s) 154
TaiI ACGT 1 cut(s) 274
TaqI TCGA 1 cut(s) 303
TauI GCSGC 1 cut(s) 107
Tru1I TTAA 2 cut(s) 179, 210
Tru9I TTAA 2 cut(s) 179, 210
TscAI CASTG 1 cut(s) 124
TseFI GTSAC 1 cut(s) 272
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 2 cut(s) 32, 150
TspRI CASTG 1 cut(s) 124
XceI RCATGY 1 cut(s) 86
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.