Rw6G003480

peptidase inhibitor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0015533
Physical Location & Seq
Forward (+)
5555780 .. 5556271
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G003480.1

Sequence Viewer

Length: 492 bp
ATGGAATTCAGTAAGCTCATTTTCCTAGGCATGTGTTGCATTGCCTTAATCTCAATTCATATTTCTCTGGCCAATGCTGATCCATTGGCTGATGAATTCGTCGAAGCACACAACAAATATCGTGCAGTGGAAAATGTTCCTCCGGTTTCATGGGACGAAACAGTCGCAGAATATGCTAGAAATTATGCCAATTCAAAAGCCGAGACTTGTGAAATGGTGCATTCACATGGACAATATGGTGAATGCTTAGCCATGGGTAATTACGATGTTTCACCTTCAAAGGCGGTGGAGTTGTGGGCGGATGAGAAACAATATTATGACCATGCCTCCAATACCTGTGCCGCAGGCCAGGTGTGCGGCCACTACACTCAGGTGGTCTGGGAAAAATCAACCCACATTGGGTGTGCCAAGGTTCGTTGCCAGAATGGAGGTACTTTTATAACATGCAACTATGATCCTCCTGGTAACTATGTTGGTGAAAAACCTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

163

Amino Acids

18.08

Weight (kDa)

5.12

Isoelectric Point (pI)

34.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 34 - 151 3.2e-22 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 440
AasI GACNNNNNNGTC 1 cut(s) 161
AciI CCGC 4 cut(s) 284, 299, 342, 357
AclWI GGATC 2 cut(s) 74, 449
AcoI YGGCCR 2 cut(s) 69, 358
AcsI RAATTY 2 cut(s) 5, 95
AfaI GTAC 1 cut(s) 433
AfiI CCNNNNNNNGG 1 cut(s) 399
AgsI TTSAA 2 cut(s) 195, 279
AjnI CCWGG 2 cut(s) 348, 460
AleI CACNNNNGTG 1 cut(s) 371
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 2 cut(s) 74, 449
AoxI GGCC 3 cut(s) 69, 346, 358
ApoI RAATTY 2 cut(s) 5, 95
Asp700I GAANNNNTTC 1 cut(s) 135
AspA2I CCTAGG 1 cut(s) 25
AsuHPI GGTGA 3 cut(s) 251, 264, 488
AvrII CCTAGG 1 cut(s) 25
BalI TGGCCA 1 cut(s) 71
BciT130I CCWGG 2 cut(s) 350, 462
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 2 cut(s) 26, 177
BisI GCNGC 2 cut(s) 342, 358
BlnI CCTAGG 1 cut(s) 25
BlpI GCTNAGC 1 cut(s) 247
BlsI GCNGC 2 cut(s) 343, 359
Bme1390I CCNGG 2 cut(s) 350, 462
BmrFI CCNGG 2 cut(s) 350, 462
Bpu1102I GCTNAGC 1 cut(s) 247
BsaJI CCNNGG 3 cut(s) 25, 252, 408
BsaWI WCCGGW 1 cut(s) 142
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 1 cut(s) 399
Bse3DI GCAATG 1 cut(s) 39
BseBI CCWGG 2 cut(s) 350, 462
BseDI CCNNGG 3 cut(s) 25, 252, 408
BseGI GGATG 1 cut(s) 307
BseLI CCNNNNNNNGG 1 cut(s) 399
BseMI GCAATG 1 cut(s) 39
BseMII CTCAG 1 cut(s) 383
BsgI GTGCAG 1 cut(s) 144
BshFI GGCC 3 cut(s) 71, 348, 360
BsiSI CCGG 1 cut(s) 143
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 1 cut(s) 399
BsmAI GTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 167
BsmI GAATGC 2 cut(s) 220, 248
BsnI GGCC 3 cut(s) 71, 348, 360
Bsp143I GATC 2 cut(s) 79, 454
Bsp1720I GCTNAGC 1 cut(s) 247
Bsp19I CCATGG 1 cut(s) 252
BspACI CCGC 4 cut(s) 284, 299, 342, 357
BspANI GGCC 3 cut(s) 71, 348, 360
BspCNI CTCAG 1 cut(s) 382
BspPI GGATC 2 cut(s) 74, 449
BsrDI GCAATG 1 cut(s) 39
BssECI CCNNGG 3 cut(s) 25, 252, 408
BssMI GATC 2 cut(s) 79, 454
BssT1I CCWWGG 3 cut(s) 25, 252, 408
Bst2UI CCWGG 2 cut(s) 350, 462
Bst4CI ACNGT 1 cut(s) 163
BstAPI GCANNNNNTGC 2 cut(s) 36, 173
BstC8I GCNNGC 1 cut(s) 346
BstDEI CTNAG 2 cut(s) 247, 369
BstDSI CCRYGG 1 cut(s) 252
BstF5I GGATG 1 cut(s) 307
BstKTI GATC 2 cut(s) 82, 457
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 2 cut(s) 79, 454
BstMWI GCNNNNNNNGC 3 cut(s) 36, 173, 354
BstNI CCWGG 2 cut(s) 350, 462
BstNSI RCATGY 2 cut(s) 34, 447
BstSCI CCNGG 2 cut(s) 348, 460
BsuRI GGCC 3 cut(s) 71, 348, 360
BtgI CCRYGG 1 cut(s) 252
BtsCI GGATG 1 cut(s) 307
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 346
Csp6I GTAC 1 cut(s) 432
CspCI CAANNNNNGTGG 2 cut(s) 267, 302
CviAII CATG 6 cut(s) 31, 150, 227, 253, 323, 444
CviJI RGCY 7 cut(s) 16, 71, 89, 200, 251, 348, 360
CviKI_1 RGCY 7 cut(s) 16, 71, 89, 200, 251, 348, 360
CviQI GTAC 1 cut(s) 432
DdeI CTNAG 2 cut(s) 247, 369
DpnI GATC 2 cut(s) 81, 456
DpnII GATC 2 cut(s) 79, 454
DrdI GACNNNNNNGTC 1 cut(s) 161
DseDI GACNNNNNNGTC 1 cut(s) 161
EaeI YGGCCR 2 cut(s) 69, 358
EciI GGCGGA 1 cut(s) 314
Eco130I CCWWGG 3 cut(s) 25, 252, 408
EcoRI GAATTC 2 cut(s) 5, 95
EcoRII CCWGG 2 cut(s) 348, 460
EcoT14I CCWWGG 3 cut(s) 25, 252, 408
ErhI CCWWGG 3 cut(s) 25, 252, 408
FaeI CATG 6 cut(s) 34, 153, 230, 256, 326, 447
FaqI GGGAC 1 cut(s) 167
FatI CATG 6 cut(s) 30, 149, 226, 252, 322, 443
Fnu4HI GCNGC 2 cut(s) 342, 358
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 2 cut(s) 342, 358
FspBI CTAG 2 cut(s) 26, 177
GluI GCNGC 2 cut(s) 342, 358
HaeIII GGCC 3 cut(s) 71, 348, 360
HapII CCGG 1 cut(s) 143
Hin1II CATG 6 cut(s) 34, 153, 230, 256, 326, 447
HpaII CCGG 1 cut(s) 143
HphI GGTGA 3 cut(s) 251, 264, 488
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 1 cut(s) 285
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4V TGCA 4 cut(s) 39, 125, 220, 447
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 173, 354
HpyF3I CTNAG 2 cut(s) 247, 369
Hsp92II CATG 6 cut(s) 34, 153, 230, 256, 326, 447
Kzo9I GATC 2 cut(s) 79, 454
MaeI CTAG 2 cut(s) 26, 177
MaeIII GTNAC 1 cut(s) 464
MalI GATC 2 cut(s) 81, 456
MboI GATC 2 cut(s) 79, 454
MlsI TGGCCA 1 cut(s) 71
MluCI AATT 6 cut(s) 5, 54, 95, 181, 190, 259
MluNI TGGCCA 1 cut(s) 71
MnlI CCTC 4 cut(s) 150, 337, 422, 468
Mox20I TGGCCA 1 cut(s) 71
MroXI GAANNNNTTC 1 cut(s) 135
MscI TGGCCA 1 cut(s) 71
MseI TTAA 1 cut(s) 47
MslI CAYNNNNRTG 2 cut(s) 225, 371
Msp20I TGGCCA 1 cut(s) 71
MspI CCGG 1 cut(s) 143
MspR9I CCNGG 2 cut(s) 350, 462
Mva1269I GAATGC 2 cut(s) 220, 248
MvaI CCWGG 2 cut(s) 350, 462
MwoI GCNNNNNNNGC 3 cut(s) 36, 173, 354
NcoI CCATGG 1 cut(s) 252
NdeII GATC 2 cut(s) 79, 454
NlaIII CATG 6 cut(s) 34, 153, 230, 256, 326, 447
NmeAIII GCCGAG 1 cut(s) 226
NspI RCATGY 2 cut(s) 34, 447
OliI CACNNNNGTG 1 cut(s) 371
PctI GAATGC 2 cut(s) 220, 248
PdmI GAANNNNTTC 1 cut(s) 135
PkrI GCNGC 2 cut(s) 343, 359
PsiI TTATAA 1 cut(s) 440
Psp6I CCWGG 2 cut(s) 348, 460
PspGI CCWGG 2 cut(s) 348, 460
RsaI GTAC 1 cut(s) 433
RsaNI GTAC 1 cut(s) 432
RseI CAYNNNNRTG 2 cut(s) 225, 371
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 2 cut(s) 342, 358
Sau3AI GATC 2 cut(s) 79, 454
ScrFI CCNGG 2 cut(s) 350, 462
SetI ASST 8 cut(s) 18, 277, 338, 354, 375, 414, 433, 487
SmiMI CAYNNNNRTG 2 cut(s) 225, 371
Sse9I AATT 6 cut(s) 5, 54, 95, 181, 190, 259
SsiI CCGC 4 cut(s) 284, 299, 342, 357
SspI AATATT 1 cut(s) 314
SspMI CTAG 2 cut(s) 26, 177
StyD4I CCNGG 2 cut(s) 348, 460
StyI CCWWGG 3 cut(s) 25, 252, 408
TaaI ACNGT 1 cut(s) 163
TaqI TCGA 1 cut(s) 102
TasI AATT 6 cut(s) 5, 54, 95, 181, 190, 259
TauI GCSGC 2 cut(s) 344, 360
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TscAI CASTG 1 cut(s) 132
TspDTI ATGAA 3 cut(s) 47, 108, 138
TspRI CASTG 1 cut(s) 132
XapI RAATTY 2 cut(s) 5, 95
XceI RCATGY 2 cut(s) 34, 447
XmaJI CCTAGG 1 cut(s) 25
XmnI GAANNNNTTC 1 cut(s) 135
XspI CTAG 2 cut(s) 26, 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.