Rroxscaffold_7G00214000

peptidase inhibitor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015533
Physical Location & Seq
Reverse (-)
64514938 .. 64516224
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00214000.1

Sequence Viewer

Length: 600 bp
ATGGAATTCACTAAGCTCGTTTTCCTAGGCATGTGTTGCATTGCCTTAATCTCAATTCATATTTCTCCAGCCAATGCTGATCCATTGGCTGATGAATTCGTCGAAGCACACAACAAATATCGTGCAGTGGAAAATGTTCCTCCGGTTTCATGGGACGAAACAGTCGCAGATTATGCTAGAAATTATGCCAATTCAAAAGCTGAGACTTGTGAAATGGTGCATTCACATGGACAATATGGTGAATGCTTAGCCATGGGTAATTACGACGTTTCACCTTCAAAGGCGGTGCAGTTGTGGGCGGATGAGAAACAATACTATGACCATGCCTCCAATACATGTGCCGCGGGCCGTGTGCGGCCACTACACTCGGGTGGTTTGGGCAAAATCAACCCACATTGGGTGTGCCAAGATTCTAGTACCCAAACACCACCACCACCTCTAAACCATGATCCGGGTCCACTGCAGCCACCTTGGGAGTCCAATACGAGCTGTCCATTCCCCTCCATGAAGAGGCGGGTGGGTTGGTGTTGCATCTGCTGTCCCAAATCTCCGCCAAGGCCTTATTTGCATGCCCGAGATTGTAGAAATGGACGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

199

Amino Acids

22.11

Weight (kDa)

6.48

Isoelectric Point (pI)

54.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 34 - 111 7.2e-10 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 161
AccII CGCG 1 cut(s) 344
AciI CCGC 7 cut(s) 284, 299, 342, 344, 355, 514, 551
AclWI GGATC 2 cut(s) 74, 443
AcoI YGGCCR 1 cut(s) 356
AcsI RAATTY 2 cut(s) 5, 95
AfaI GTAC 1 cut(s) 418
AfiI CCNNNNNNNGG 3 cut(s) 397, 451, 510
AflIII ACRYGT 1 cut(s) 335
AgsI TTSAA 2 cut(s) 195, 279
AleI CACNNNNGTG 1 cut(s) 369
AluBI AGCT 3 cut(s) 16, 200, 489
AluI AGCT 3 cut(s) 16, 200, 489
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 2 cut(s) 74, 443
Ama87I CYCGRG 2 cut(s) 367, 573
AoxI GGCC 3 cut(s) 346, 356, 557
ApeKI GCWGC 1 cut(s) 463
ApoI RAATTY 2 cut(s) 5, 95
Asp700I GAANNNNTTC 1 cut(s) 135
AspA2I CCTAGG 1 cut(s) 25
AspS9I GGNCC 2 cut(s) 346, 455
AsuC2I CCSGG 1 cut(s) 453
AsuHPI GGTGA 2 cut(s) 251, 264
AvaI CYCGRG 2 cut(s) 367, 573
AvaII GGWCC 1 cut(s) 455
AvrII CCTAGG 1 cut(s) 25
BbvI GCAGC 1 cut(s) 475
BceAI ACGGC 1 cut(s) 333
BcnI CCSGG 1 cut(s) 453
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 3 cut(s) 26, 177, 414
BfmI CTRYAG 1 cut(s) 461
BisI GCNGC 3 cut(s) 342, 356, 464
BlnI CCTAGG 1 cut(s) 25
BlpI GCTNAGC 1 cut(s) 247
BlsI GCNGC 3 cut(s) 343, 357, 465
Bme1390I CCNGG 1 cut(s) 453
Bme18I GGWCC 1 cut(s) 455
BmeT110I CYCGRG 2 cut(s) 367, 573
BmgT120I GGNCC 2 cut(s) 346, 455
BmiI GGNNCC 1 cut(s) 456
BmrFI CCNGG 1 cut(s) 453
BmsI GCATC 1 cut(s) 540
BpmI CTGGAG 1 cut(s) 51
Bpu1102I GCTNAGC 1 cut(s) 247
BpuMI CCSGG 1 cut(s) 453
BsaJI CCNNGG 5 cut(s) 25, 252, 342, 470, 554
BsaWI WCCGGW 1 cut(s) 142
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 3 cut(s) 397, 451, 510
Bse3DI GCAATG 1 cut(s) 39
BseDI CCNNGG 5 cut(s) 25, 252, 342, 470, 554
BseGI GGATG 1 cut(s) 307
BseLI CCNNNNNNNGG 3 cut(s) 397, 451, 510
BseMI GCAATG 1 cut(s) 39
BseMII CTCAG 1 cut(s) 192
BseXI GCAGC 1 cut(s) 475
BsgI GTGCAG 2 cut(s) 144, 308
Bsh1236I CGCG 1 cut(s) 344
BshFI GGCC 3 cut(s) 348, 358, 559
BsiHKCI CYCGRG 2 cut(s) 367, 573
BsiSI CCGG 2 cut(s) 143, 452
BslFI GGGAC 2 cut(s) 167, 525
BslI CCNNNNNNNGG 3 cut(s) 397, 451, 510
BsmAI GTCTC 1 cut(s) 197
BsmFI GGGAC 2 cut(s) 167, 525
BsmI GAATGC 2 cut(s) 220, 248
BsnI GGCC 3 cut(s) 348, 358, 559
BsoBI CYCGRG 2 cut(s) 367, 573
Bsp143I GATC 2 cut(s) 79, 448
Bsp1720I GCTNAGC 1 cut(s) 247
Bsp19I CCATGG 1 cut(s) 252
BspACI CCGC 7 cut(s) 284, 299, 342, 344, 355, 514, 551
BspANI GGCC 3 cut(s) 348, 358, 559
BspCNI CTCAG 1 cut(s) 193
BspFNI CGCG 1 cut(s) 344
BspHI TCATGA 1 cut(s) 596
BspLI GGNNCC 1 cut(s) 456
BspMAI CTGCAG 1 cut(s) 465
BspPI GGATC 2 cut(s) 74, 443
BsrDI GCAATG 1 cut(s) 39
BssECI CCNNGG 5 cut(s) 25, 252, 342, 470, 554
BssMI GATC 2 cut(s) 79, 448
BssT1I CCWWGG 4 cut(s) 25, 252, 470, 554
Bst4CI ACNGT 1 cut(s) 163
Bst6I CTCTTC 1 cut(s) 503
BstAPI GCANNNNNTGC 2 cut(s) 36, 173
BstC8I GCNNGC 2 cut(s) 346, 570
BstDEI CTNAG 3 cut(s) 12, 201, 247
BstDSI CCRYGG 2 cut(s) 252, 342
BstF5I GGATG 1 cut(s) 307
BstFNI CGCG 1 cut(s) 344
BstKTI GATC 2 cut(s) 82, 451
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 2 cut(s) 79, 448
BstMWI GCNNNNNNNGC 3 cut(s) 36, 173, 565
BstNSI RCATGY 3 cut(s) 34, 339, 572
BstSCI CCNGG 1 cut(s) 451
BstSFI CTRYAG 1 cut(s) 461
BstUI CGCG 1 cut(s) 344
BstV1I GCAGC 1 cut(s) 475
BsuRI GGCC 3 cut(s) 348, 358, 559
BtgI CCRYGG 2 cut(s) 252, 342
BtsCI GGATG 1 cut(s) 307
BtsI GCAGTG 2 cut(s) 132, 458
BtsIMutI CAGTG 2 cut(s) 132, 458
Cac8I GCNNGC 2 cut(s) 346, 570
CciI TCATGA 1 cut(s) 596
Cfr13I GGNCC 2 cut(s) 346, 455
Cfr42I CCGCGG 1 cut(s) 345
Csp6I GTAC 1 cut(s) 417
CviQI GTAC 1 cut(s) 417
DdeI CTNAG 3 cut(s) 12, 201, 247
DpnI GATC 2 cut(s) 81, 450
DpnII GATC 2 cut(s) 79, 448
DrdI GACNNNNNNGTC 1 cut(s) 161
DseDI GACNNNNNNGTC 1 cut(s) 161
EaeI YGGCCR 1 cut(s) 356
Eam1104I CTCTTC 1 cut(s) 503
EarI CTCTTC 1 cut(s) 503
EciI GGCGGA 2 cut(s) 314, 540
Eco130I CCWWGG 4 cut(s) 25, 252, 470, 554
Eco147I AGGCCT 1 cut(s) 559
Eco47I GGWCC 1 cut(s) 455
Eco88I CYCGRG 2 cut(s) 367, 573
EcoRI GAATTC 2 cut(s) 5, 95
EcoT14I CCWWGG 4 cut(s) 25, 252, 470, 554
ErhI CCWWGG 4 cut(s) 25, 252, 470, 554
FaqI GGGAC 2 cut(s) 167, 525
FauI CCCGC 2 cut(s) 337, 507
Fnu4HI GCNGC 3 cut(s) 342, 356, 464
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 3 cut(s) 342, 356, 464
FspBI CTAG 3 cut(s) 26, 177, 414
GluI GCNGC 3 cut(s) 342, 356, 464
GsuI CTGGAG 1 cut(s) 51
HaeIII GGCC 3 cut(s) 348, 358, 559
HapII CCGG 2 cut(s) 143, 452
HinfI GANTC 2 cut(s) 410, 476
HpaII CCGG 2 cut(s) 143, 452
HphI GGTGA 2 cut(s) 251, 264
Hpy166II GTNNAC 1 cut(s) 458
Hpy188III TCNNGA 1 cut(s) 597
Hpy8I GTNNAC 1 cut(s) 458
Hpy99I CGWCG 2 cut(s) 104, 269
HpyAV CCTTC 1 cut(s) 285
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4IV ACGT 2 cut(s) 267, 592
HpyCH4V TGCA 7 cut(s) 39, 125, 220, 289, 463, 531, 568
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 173, 565
HpyF3I CTNAG 3 cut(s) 12, 201, 247
HpySE526I ACGT 2 cut(s) 267, 592
KspI CCGCGG 1 cut(s) 345
Kzo9I GATC 2 cut(s) 79, 448
LpnPI CCDG 3 cut(s) 81, 156, 465
Lsp1109I GCAGC 1 cut(s) 475
LweI GCATC 1 cut(s) 540
MaeI CTAG 3 cut(s) 26, 177, 414
MaeII ACGT 2 cut(s) 267, 592
MalI GATC 2 cut(s) 81, 450
MboI GATC 2 cut(s) 79, 448
MboII GAAGA 1 cut(s) 520
MluCI AATT 6 cut(s) 5, 54, 95, 181, 190, 259
MlyI GAGTC 1 cut(s) 485
MnlI CCTC 5 cut(s) 150, 337, 447, 504, 511
MroXI GAANNNNTTC 1 cut(s) 135
MseI TTAA 1 cut(s) 47
MslI CAYNNNNRTG 2 cut(s) 225, 369
MspA1I CMGCKG 1 cut(s) 344
MspI CCGG 2 cut(s) 143, 452
MspR9I CCNGG 1 cut(s) 453
Mva1269I GAATGC 2 cut(s) 220, 248
MvnI CGCG 1 cut(s) 344
MwoI GCNNNNNNNGC 3 cut(s) 36, 173, 565
NciI CCSGG 1 cut(s) 453
NcoI CCATGG 1 cut(s) 252
NdeII GATC 2 cut(s) 79, 448
NlaIV GGNNCC 1 cut(s) 456
NspI RCATGY 3 cut(s) 34, 339, 572
OliI CACNNNNGTG 1 cut(s) 369
PaeI GCATGC 1 cut(s) 572
PagI TCATGA 1 cut(s) 596
PceI AGGCCT 1 cut(s) 559
PciI ACATGT 1 cut(s) 335
PctI GAATGC 2 cut(s) 220, 248
PdmI GAANNNNTTC 1 cut(s) 135
PfeI GAWTC 1 cut(s) 410
PkrI GCNGC 3 cut(s) 343, 357, 465
PleI GAGTC 1 cut(s) 484
PpsI GAGTC 1 cut(s) 484
PscI ACATGT 1 cut(s) 335
PspN4I GGNNCC 1 cut(s) 456
PspPI GGNCC 2 cut(s) 346, 455
PstI CTGCAG 1 cut(s) 465
RsaI GTAC 1 cut(s) 418
RsaNI GTAC 1 cut(s) 417
RseI CAYNNNNRTG 2 cut(s) 225, 369
SacII CCGCGG 1 cut(s) 345
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 3 cut(s) 342, 356, 464
Sau3AI GATC 2 cut(s) 79, 448
Sau96I GGNCC 2 cut(s) 346, 455
SchI GAGTC 1 cut(s) 485
ScrFI CCNGG 1 cut(s) 453
SetI ASST 8 cut(s) 18, 202, 270, 277, 439, 472, 491, 595
SfaNI GCATC 1 cut(s) 540
SfcI CTRYAG 1 cut(s) 461
Sfr303I CCGCGG 1 cut(s) 345
SgrBI CCGCGG 1 cut(s) 345
SinI GGWCC 1 cut(s) 455
SmiMI CAYNNNNRTG 2 cut(s) 225, 369
SphI GCATGC 1 cut(s) 572
Sse9I AATT 6 cut(s) 5, 54, 95, 181, 190, 259
SseBI AGGCCT 1 cut(s) 559
SsiI CCGC 7 cut(s) 284, 299, 342, 344, 355, 514, 551
SspMI CTAG 3 cut(s) 26, 177, 414
StuI AGGCCT 1 cut(s) 559
StyD4I CCNGG 1 cut(s) 451
StyI CCWWGG 4 cut(s) 25, 252, 470, 554
TaaI ACNGT 1 cut(s) 163
TaiI ACGT 2 cut(s) 270, 595
TaqI TCGA 1 cut(s) 102
TasI AATT 6 cut(s) 5, 54, 95, 181, 190, 259
TauI GCSGC 2 cut(s) 344, 358
TfiI GAWTC 1 cut(s) 410
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TscAI CASTG 2 cut(s) 132, 465
TseI GCWGC 1 cut(s) 463
TspDTI ATGAA 5 cut(s) 47, 108, 138, 521, 585
TspRI CASTG 2 cut(s) 132, 465
VpaK11BI GGWCC 1 cut(s) 455
XapI RAATTY 2 cut(s) 5, 95
XceI RCATGY 3 cut(s) 34, 339, 572
XmaJI CCTAGG 1 cut(s) 25
XmnI GAANNNNTTC 1 cut(s) 135
XspI CTAG 3 cut(s) 26, 177, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.