FvH4_2g07220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015534
Physical Location & Seq
Reverse (-)
5982431 .. 5984944
2514 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g07220.t1

Sequence Viewer

Length: 714 bp
ATGGGGACGAAATCGAAATCGAAGAGGAAGATGATGATCGTGATCATGGTGTTGTTGGTTACGATGATGATGATGATGATGTTTGTTGCGGATGCTGGAAGTGATACAAATGGTGTGTTTGATCCTTGCTCAGATGCAACAATCCAAAGATGGGACGGTTTTACATTTGGTCTTGCGTTTTCAACCAAAGACTCGTTCTTTTCCAATCAGACTCAACTTTCGCCCTGTGATAAGCGTCTATCTCTCTCAACTGCACAACTTGCTCTCTTTCGACCCAAAGTCGATGAGATCTCTCTCCTTTCCATCAACAGTAGCAACTTCAATCCGGCCAGGGCAGGCGGGTACATGGTGGCATTTGCTGGACGCAAGTATGCAGCAAGATCACCCCCAATATTGGTTGCTGATGACTCGAATACCATAACTAGTTTCACCTTGGTACTTGAATTCGACAGGGGTATTCTTCAAAACTTGTACTGGAAGAAATTTGGGTGCAAAGCATGCTCTGGGGATTACTCTGTCTGCCTTAATGGTGAGGACTGTGCTGTACCAAATTCAAAATGCAAAAGCAATGGTGGGAGTTTTGACTGCAATCTGAGCATACAGTTAACCTTCTCAGGAACAGACAAACATCTTCAAGTTCTTAACTCATGGTATGAGGTGAAAAAATTACAAAGTTACTCGCTCTACAGCCTATTCAAGGATTTTCTGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

238

Amino Acids

26.3

Weight (kDa)

8.73

Isoelectric Point (pI)

32.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015534)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g07220
malus_domestica MD05G1072900.v1.1
prunus_persica Prupe.8G113200_v2.0.a1
pyrus_communis pycom05g06520
rosa_chinensis RchiOBHm_Chr6g0259741
rosa_laevigata RLG00000014512
rosa_multiflora Rmu_sc0002130.1_g000009 Rmu_sc0015614.1_g000002
rosa_roxburghii Rroxscaffold_7G00207000
rosa_rugosa Rorug05G0590300
rosa_samantha Rh6AG106700 Rh6BG102000 Rh6CG095700 Rh6DG089600
rosa_wichuraiana Rw0G013490 Rw6G009240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 89, 339
AclWI GGATC 1 cut(s) 116
AcoI YGGCCR 1 cut(s) 327
AcsI RAATTY 3 cut(s) 443, 482, 550
AfaI GTAC 4 cut(s) 344, 438, 473, 546
AfiI CCNNNNNNNGG 3 cut(s) 151, 394, 697
AgsI TTSAA 7 cut(s) 183, 322, 443, 464, 555, 635, 697
AhdI GACNNNNNGTC 1 cut(s) 278
AhlI ACTAGT 1 cut(s) 422
AjnI CCWGG 1 cut(s) 329
AjuI GAANNNNNNNTTGG 2 cut(s) 179, 211
AlwI GGATC 1 cut(s) 116
AoxI GGCC 1 cut(s) 327
ApeKI GCWGC 1 cut(s) 374
ApoI RAATTY 3 cut(s) 443, 482, 550
ArsI GACNNNNNNTTYG 2 cut(s) 202, 234
AsuHPI GGTGA 4 cut(s) 375, 421, 542, 670
BbvI GCAGC 1 cut(s) 386
BccI CCATC 2 cut(s) 144, 311
BciT130I CCWGG 1 cut(s) 331
BclI TGATCA 1 cut(s) 42
BcuI ACTAGT 1 cut(s) 422
BfaI CTAG 1 cut(s) 423
BfmI CTRYAG 1 cut(s) 685
BglII AGATCT 1 cut(s) 288
BisI GCNGC 1 cut(s) 375
BlsI GCNGC 1 cut(s) 376
Bme1390I CCNGG 1 cut(s) 331
BmeRI GACNNNNNGTC 1 cut(s) 278
BmrFI CCNGG 1 cut(s) 331
BmsI GCATC 2 cut(s) 82, 124
BsaBI GATNNNNATC 2 cut(s) 35, 41
BsaJI CCNNGG 2 cut(s) 330, 432
Bsc4I CCNNNNNNNGG 3 cut(s) 151, 394, 697
Bse1I ACTGG 1 cut(s) 479
Bse3DI GCAATG 1 cut(s) 574
Bse8I GATNNNNATC 2 cut(s) 35, 41
BseBI CCWGG 1 cut(s) 331
BseDI CCNNGG 2 cut(s) 330, 432
BseGI GGATG 1 cut(s) 97
BseJI GATNNNNATC 2 cut(s) 35, 41
BseLI CCNNNNNNNGG 3 cut(s) 151, 394, 697
BseMI GCAATG 1 cut(s) 574
BseMII CTCAG 3 cut(s) 144, 584, 627
BseNI ACTGG 1 cut(s) 479
BseXI GCAGC 1 cut(s) 386
BsgI GTGCAG 1 cut(s) 237
BshFI GGCC 1 cut(s) 329
BsiSI CCGG 1 cut(s) 326
BslFI GGGAC 2 cut(s) 19, 167
BslI CCNNNNNNNGG 3 cut(s) 151, 394, 697
BsmFI GGGAC 2 cut(s) 19, 167
BsnI GGCC 1 cut(s) 329
Bsp143I GATC 5 cut(s) 36, 42, 121, 288, 380
BspACI CCGC 2 cut(s) 89, 339
BspANI GGCC 1 cut(s) 329
BspCNI CTCAG 3 cut(s) 143, 585, 626
BspPI GGATC 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 574
BsrI ACTGG 1 cut(s) 479
BssECI CCNNGG 2 cut(s) 330, 432
BssMI GATC 5 cut(s) 36, 42, 121, 288, 380
BssT1I CCWWGG 1 cut(s) 432
Bst2UI CCWGG 1 cut(s) 331
Bst4CI ACNGT 4 cut(s) 158, 311, 539, 603
Bst6I CTCTTC 1 cut(s) 17
BstAPI GCANNNNNTGC 2 cut(s) 260, 498
BstC8I GCNNGC 2 cut(s) 337, 499
BstDEI CTNAG 3 cut(s) 130, 593, 613
BstENI CCTNNNNNAGG 1 cut(s) 695
BstF5I GGATG 1 cut(s) 97
BstKTI GATC 5 cut(s) 39, 45, 124, 291, 383
BstMBI GATC 5 cut(s) 36, 42, 121, 288, 380
BstMWI GCNNNNNNNGC 3 cut(s) 260, 498, 594
BstNI CCWGG 1 cut(s) 331
BstNSI RCATGY 1 cut(s) 501
BstSCI CCNGG 1 cut(s) 329
BstSFI CTRYAG 1 cut(s) 685
BstV1I GCAGC 1 cut(s) 386
BstX2I RGATCY 1 cut(s) 288
BstYI RGATCY 1 cut(s) 288
BsuRI GGCC 1 cut(s) 329
BtsCI GGATG 1 cut(s) 97
Cac8I GCNNGC 2 cut(s) 337, 499
CseI GACGC 2 cut(s) 224, 372
Csp6I GTAC 4 cut(s) 343, 437, 472, 545
CviAII CATG 4 cut(s) 46, 346, 498, 648
CviJI RGCY 2 cut(s) 329, 690
CviKI_1 RGCY 2 cut(s) 329, 690
CviQI GTAC 4 cut(s) 343, 437, 472, 545
DdeI CTNAG 3 cut(s) 130, 593, 613
DpnI GATC 5 cut(s) 38, 44, 123, 290, 382
DpnII GATC 5 cut(s) 36, 42, 121, 288, 380
DriI GACNNNNNGTC 1 cut(s) 278
EaeI YGGCCR 1 cut(s) 327
Eam1104I CTCTTC 1 cut(s) 17
Eam1105I GACNNNNNGTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 17
Eco130I CCWWGG 1 cut(s) 432
EcoNI CCTNNNNNAGG 1 cut(s) 695
EcoRI GAATTC 1 cut(s) 443
EcoRII CCWGG 1 cut(s) 329
EcoT14I CCWWGG 1 cut(s) 432
ErhI CCWWGG 1 cut(s) 432
FaeI CATG 4 cut(s) 49, 349, 501, 651
FaiI YATR 9 cut(s) 47, 347, 372, 419, 499, 599, 649, 654, 712
FaqI GGGAC 2 cut(s) 19, 167
FatI CATG 4 cut(s) 45, 345, 497, 647
FauI CCCGC 1 cut(s) 332
FbaI TGATCA 1 cut(s) 42
Fnu4HI GCNGC 1 cut(s) 375
FokI GGATG 1 cut(s) 104
Fsp4HI GCNGC 1 cut(s) 375
FspBI CTAG 1 cut(s) 423
GluI GCNGC 1 cut(s) 375
HaeIII GGCC 1 cut(s) 329
HapII CCGG 1 cut(s) 326
HgaI GACGC 2 cut(s) 224, 372
Hin1II CATG 4 cut(s) 49, 349, 501, 651
HincII GTYRAC 1 cut(s) 606
HindII GTYRAC 1 cut(s) 606
HinfI GANTC 3 cut(s) 191, 211, 407
HpaI GTTAAC 1 cut(s) 606
HpaII CCGG 1 cut(s) 326
HphI GGTGA 4 cut(s) 375, 421, 542, 670
Hpy166II GTNNAC 1 cut(s) 606
Hpy188I TCNGA 4 cut(s) 133, 210, 594, 708
Hpy188III TCNNGA 2 cut(s) 40, 615
Hpy8I GTNNAC 1 cut(s) 606
HpyAV CCTTC 1 cut(s) 619
HpyCH4III ACNGT 4 cut(s) 158, 311, 539, 603
HpyCH4V TGCA 6 cut(s) 137, 254, 374, 492, 561, 588
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 498, 594
HpyF3I CTNAG 3 cut(s) 130, 593, 613
Hsp92II CATG 4 cut(s) 49, 349, 501, 651
Ksp22I TGATCA 1 cut(s) 42
KspAI GTTAAC 1 cut(s) 606
Kzo9I GATC 5 cut(s) 36, 42, 121, 288, 380
Lsp1109I GCAGC 1 cut(s) 386
LweI GCATC 2 cut(s) 82, 124
MaeI CTAG 1 cut(s) 423
MaeIII GTNAC 2 cut(s) 58, 674
MalI GATC 5 cut(s) 38, 44, 123, 290, 382
MboI GATC 5 cut(s) 36, 42, 121, 288, 380
MboII GAAGA 5 cut(s) 34, 40, 452, 490, 623
MflI RGATCY 1 cut(s) 288
MluCI AATT 4 cut(s) 443, 482, 550, 665
MlyI GAGTC 3 cut(s) 185, 205, 401
MnlI CCTC 3 cut(s) 18, 526, 649
MseI TTAA 3 cut(s) 525, 605, 642
MspI CCGG 1 cut(s) 326
MspR9I CCNGG 1 cut(s) 331
MvaI CCWGG 1 cut(s) 331
MwoI GCNNNNNNNGC 3 cut(s) 260, 498, 594
NdeII GATC 5 cut(s) 36, 42, 121, 288, 380
NlaIII CATG 4 cut(s) 49, 349, 501, 651
NspI RCATGY 1 cut(s) 501
PaeI GCATGC 1 cut(s) 501
PkrI GCNGC 1 cut(s) 376
PleI GAGTC 3 cut(s) 185, 205, 401
PpsI GAGTC 3 cut(s) 185, 205, 401
Psp6I CCWGG 1 cut(s) 329
PspGI CCWGG 1 cut(s) 329
PsuI RGATCY 1 cut(s) 288
RsaI GTAC 4 cut(s) 344, 438, 473, 546
RsaNI GTAC 4 cut(s) 343, 437, 472, 545
SaqAI TTAA 3 cut(s) 525, 605, 642
SatI GCNGC 1 cut(s) 375
Sau3AI GATC 5 cut(s) 36, 42, 121, 288, 380
SchI GAGTC 3 cut(s) 185, 205, 401
ScrFI CCNGG 1 cut(s) 331
SetI ASST 3 cut(s) 434, 611, 660
SfaNI GCATC 2 cut(s) 82, 124
SfcI CTRYAG 1 cut(s) 685
SpeI ACTAGT 1 cut(s) 422
SphI GCATGC 1 cut(s) 501
Sse9I AATT 4 cut(s) 443, 482, 550, 665
SsiI CCGC 2 cut(s) 89, 339
SspI AATATT 1 cut(s) 393
SspMI CTAG 1 cut(s) 423
StyD4I CCNGG 1 cut(s) 329
StyI CCWWGG 1 cut(s) 432
TaaI ACNGT 4 cut(s) 158, 311, 539, 603
TaqI TCGA 6 cut(s) 14, 20, 271, 282, 410, 447
TasI AATT 4 cut(s) 443, 482, 550, 665
TatI WGTACW 1 cut(s) 471
Tru1I TTAA 3 cut(s) 525, 605, 642
Tru9I TTAA 3 cut(s) 525, 605, 642
TseI GCWGC 1 cut(s) 374
XagI CCTNNNNNAGG 1 cut(s) 695
XapI RAATTY 3 cut(s) 443, 482, 550
XceI RCATGY 1 cut(s) 501
XspI CTAG 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.