RLG00000014512

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015534
Physical Location & Seq
Forward (+)
54139834 .. 54141176
1343 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014512

Sequence Viewer

Length: 687 bp
ATGATGATGATCATCATGCTGTTGTTGGTTACGATGATGAGGTTTGTTGCGGATGCTGGAAGTGATACAAATGGTGTATTTGATCCTTGCTCAGATGCAACAATCCAAAGATGGGATGGTTTTACATTTGGTCTTGCGTTTTCAAACAAAGACTCGTTCTTTTTCAATCAGACTCAATTTTCGCCCTGTGATACGCGTCTATCTCTCTCGAGCCCAGACAAGAAAGCACAACTTGCTGTGTTTCGACCCAAAGTCGATGAGATTTCCTTCCTTACCGTCGACAGTAGCTCCTCTAATCCGGCTAAGGCAGGCGGGTACATGGTGGCATTTGCTGGACGCAAATATGCAGCAAGATCACCCCCAATATTGGTCGCTGATGACTCGAATACCATAACTAGTTTCACCTTGGTACTTGAATTCAACAGGGGTATTCTTCAGAACTTGTACTGGAAGAAATTTGGGTGCAAAGCGTGCTCCGGGGACTACTCCGTCTGCCTCAATGGGGAGGACTGTGCAGTGCCGAACCCAAAATGCAAAAGCAATGGTGGGACTTTTGACTGCAATCTAAGCATACAGTTGACCTTCTCAGGAACAGACAAAAATCTTGAAGTGCTTAACTCATGGTATGAGGTGAAAAAACTACAAAAATACTCGCTTTACAGCCTATTCAAGAATTTTCTGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

25.32

Weight (kDa)

8.06

Isoelectric Point (pI)

31.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015534)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g07220
malus_domestica MD05G1072900.v1.1
prunus_persica Prupe.8G113200_v2.0.a1
pyrus_communis pycom05g06520
rosa_chinensis RchiOBHm_Chr6g0259741
rosa_laevigata RLG00000014512
rosa_multiflora Rmu_sc0002130.1_g000009 Rmu_sc0015614.1_g000002
rosa_roxburghii Rroxscaffold_7G00207000
rosa_rugosa Rorug05G0590300
rosa_samantha Rh6AG106700 Rh6BG102000 Rh6CG095700 Rh6DG089600
rosa_wichuraiana Rw0G013490 Rw6G009240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 488
AccI GTMKAC 1 cut(s) 279
AccII CGCG 1 cut(s) 196
AciI CCGC 2 cut(s) 50, 312
AclWI GGATC 1 cut(s) 77
AcsI RAATTY 3 cut(s) 416, 455, 673
AcuI CTGAAG 1 cut(s) 419
AfaI GTAC 3 cut(s) 317, 411, 446
AfiI CCNNNNNNNGG 3 cut(s) 112, 367, 502
AflIII ACRYGT 1 cut(s) 194
AgsI TTSAA 6 cut(s) 144, 166, 416, 421, 608, 670
AhdI GACNNNNNGTC 1 cut(s) 251
AhlI ACTAGT 1 cut(s) 395
AluBI AGCT 1 cut(s) 288
AluI AGCT 1 cut(s) 288
Alw21I GWGCWC 1 cut(s) 476
AlwI GGATC 1 cut(s) 77
Ama87I CYCGRG 1 cut(s) 208
ApeKI GCWGC 1 cut(s) 347
ApoI RAATTY 3 cut(s) 416, 455, 673
ArsI GACNNNNNNTTYG 2 cut(s) 163, 195
AsuC2I CCSGG 1 cut(s) 478
AsuHPI GGTGA 3 cut(s) 348, 394, 643
AvaI CYCGRG 1 cut(s) 208
BanII GRGCYC 1 cut(s) 215
Bbv12I GWGCWC 1 cut(s) 476
BbvI GCAGC 1 cut(s) 359
BccI CCATC 2 cut(s) 105, 110
BclI TGATCA 1 cut(s) 9
BcnI CCSGG 1 cut(s) 478
BcuI ACTAGT 1 cut(s) 395
BfaI CTAG 1 cut(s) 396
BisI GCNGC 1 cut(s) 348
BlsI GCNGC 1 cut(s) 349
Bme1390I CCNGG 1 cut(s) 478
BmeRI GACNNNNNGTC 1 cut(s) 251
BmeT110I CYCGRG 1 cut(s) 208
BmrFI CCNGG 1 cut(s) 478
BmsI GCATC 2 cut(s) 43, 85
Bpu10I CCTNAGC 1 cut(s) 303
BpuMI CCSGG 1 cut(s) 478
BsaBI GATNNNNATC 2 cut(s) 8, 11
BsaJI CCNNGG 2 cut(s) 405, 477
BsaXI ACNNNNNCTCC 2 cut(s) 272, 302
Bsc4I CCNNNNNNNGG 3 cut(s) 112, 367, 502
Bse1I ACTGG 1 cut(s) 452
Bse3DI GCAATG 1 cut(s) 547
Bse8I GATNNNNATC 2 cut(s) 8, 11
BseDI CCNNGG 2 cut(s) 405, 477
BseGI GGATG 2 cut(s) 58, 121
BseJI GATNNNNATC 2 cut(s) 8, 11
BseLI CCNNNNNNNGG 3 cut(s) 112, 367, 502
BseMI GCAATG 1 cut(s) 547
BseMII CTCAG 2 cut(s) 105, 600
BseNI ACTGG 1 cut(s) 452
BseRI GAGGAG 1 cut(s) 280
BseXI GCAGC 1 cut(s) 359
BsgI GTGCAG 1 cut(s) 534
Bsh1236I CGCG 1 cut(s) 196
BsiHKAI GWGCWC 1 cut(s) 476
BsiHKCI CYCGRG 1 cut(s) 208
BsiSI CCGG 2 cut(s) 299, 477
BslFI GGGAC 2 cut(s) 494, 562
BslI CCNNNNNNNGG 3 cut(s) 112, 367, 502
BsmFI GGGAC 2 cut(s) 494, 562
BsoBI CYCGRG 1 cut(s) 208
Bsp1286I GDGCHC 2 cut(s) 215, 476
Bsp143I GATC 3 cut(s) 9, 82, 353
BspACI CCGC 2 cut(s) 50, 312
BspCNI CTCAG 2 cut(s) 104, 599
BspFNI CGCG 1 cut(s) 196
BspPI GGATC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 547
BsrI ACTGG 1 cut(s) 452
BssECI CCNNGG 2 cut(s) 405, 477
BssMI GATC 3 cut(s) 9, 82, 353
BssT1I CCWWGG 1 cut(s) 405
Bst4CI ACNGT 4 cut(s) 277, 284, 512, 576
BstAPI GCANNNNNTGC 2 cut(s) 233, 471
BstC8I GCNNGC 2 cut(s) 310, 472
BstDEI CTNAG 4 cut(s) 91, 303, 566, 586
BstF5I GGATG 2 cut(s) 58, 121
BstFNI CGCG 1 cut(s) 196
BstKTI GATC 3 cut(s) 12, 85, 356
BstMBI GATC 3 cut(s) 9, 82, 353
BstMWI GCNNNNNNNGC 3 cut(s) 233, 471, 567
BstSCI CCNGG 1 cut(s) 476
BstUI CGCG 1 cut(s) 196
BstV1I GCAGC 1 cut(s) 359
BtsCI GGATG 2 cut(s) 58, 121
BtsI GCAGTG 1 cut(s) 522
BtsIMutI CAGTG 1 cut(s) 522
Cac8I GCNNGC 2 cut(s) 310, 472
CseI GACGC 2 cut(s) 185, 345
Csp6I GTAC 3 cut(s) 316, 410, 445
CviAII CATG 3 cut(s) 16, 319, 621
CviJI RGCY 4 cut(s) 213, 288, 302, 663
CviKI_1 RGCY 4 cut(s) 213, 288, 302, 663
CviQI GTAC 3 cut(s) 316, 410, 445
DdeI CTNAG 4 cut(s) 91, 303, 566, 586
DpnI GATC 3 cut(s) 11, 84, 355
DpnII GATC 3 cut(s) 9, 82, 353
DrdI GACNNNNNNGTC 1 cut(s) 488
DriI GACNNNNNGTC 1 cut(s) 251
DseDI GACNNNNNNGTC 1 cut(s) 488
Eam1105I GACNNNNNGTC 1 cut(s) 251
Eco130I CCWWGG 1 cut(s) 405
Eco24I GRGCYC 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 419
Eco88I CYCGRG 1 cut(s) 208
EcoRI GAATTC 1 cut(s) 416
EcoT14I CCWWGG 1 cut(s) 405
EcoT38I GRGCYC 1 cut(s) 215
ErhI CCWWGG 1 cut(s) 405
FaeI CATG 3 cut(s) 19, 322, 624
FaiI YATR 8 cut(s) 17, 320, 345, 392, 572, 622, 627, 685
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FaqI GGGAC 2 cut(s) 494, 562
FatI CATG 3 cut(s) 15, 318, 620
FauI CCCGC 1 cut(s) 305
FbaI TGATCA 1 cut(s) 9
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 1 cut(s) 348
FokI GGATG 2 cut(s) 65, 128
FriOI GRGCYC 1 cut(s) 215
Fsp4HI GCNGC 1 cut(s) 348
FspBI CTAG 1 cut(s) 396
GluI GCNGC 1 cut(s) 348
HapII CCGG 2 cut(s) 299, 477
HgaI GACGC 2 cut(s) 185, 345
Hin1II CATG 3 cut(s) 19, 322, 624
HincII GTYRAC 2 cut(s) 280, 579
HindII GTYRAC 2 cut(s) 280, 579
HinfI GANTC 3 cut(s) 152, 172, 380
HpaII CCGG 2 cut(s) 299, 477
HphI GGTGA 3 cut(s) 348, 394, 643
Hpy166II GTNNAC 2 cut(s) 280, 579
Hpy188I TCNGA 4 cut(s) 94, 171, 438, 681
Hpy188III TCNNGA 4 cut(s) 208, 588, 605, 670
Hpy8I GTNNAC 2 cut(s) 280, 579
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 2 cut(s) 277, 592
HpyCH4III ACNGT 4 cut(s) 277, 284, 512, 576
HpyCH4V TGCA 6 cut(s) 98, 347, 465, 515, 534, 561
HpyF10VI GCNNNNNNNGC 3 cut(s) 233, 471, 567
HpyF3I CTNAG 4 cut(s) 91, 303, 566, 586
Hsp92II CATG 3 cut(s) 19, 322, 624
Ksp22I TGATCA 1 cut(s) 9
Kzo9I GATC 3 cut(s) 9, 82, 353
LmnI GCTCC 2 cut(s) 293, 479
Lsp1109I GCAGC 1 cut(s) 359
LweI GCATC 2 cut(s) 43, 85
MaeI CTAG 1 cut(s) 396
MaeIII GTNAC 1 cut(s) 28
MalI GATC 3 cut(s) 11, 84, 355
MboI GATC 3 cut(s) 9, 82, 353
MboII GAAGA 2 cut(s) 425, 463
MhlI GDGCHC 2 cut(s) 215, 476
MluCI AATT 4 cut(s) 176, 416, 455, 673
MluI ACGCGT 1 cut(s) 194
MlyI GAGTC 3 cut(s) 146, 166, 374
MnlI CCTC 5 cut(s) 33, 301, 499, 506, 622
MseI TTAA 1 cut(s) 615
MspI CCGG 2 cut(s) 299, 477
MspR9I CCNGG 1 cut(s) 478
MvnI CGCG 1 cut(s) 196
MwoI GCNNNNNNNGC 3 cut(s) 233, 471, 567
NciI CCSGG 1 cut(s) 478
NdeII GATC 3 cut(s) 9, 82, 353
NlaIII CATG 3 cut(s) 19, 322, 624
PaeR7I CTCGAG 1 cut(s) 208
PkrI GCNGC 1 cut(s) 349
PleI GAGTC 3 cut(s) 146, 166, 374
PpsI GAGTC 3 cut(s) 146, 166, 374
RsaI GTAC 3 cut(s) 317, 411, 446
RsaNI GTAC 3 cut(s) 316, 410, 445
SalI GTCGAC 1 cut(s) 278
SaqAI TTAA 1 cut(s) 615
SatI GCNGC 1 cut(s) 348
Sau3AI GATC 3 cut(s) 9, 82, 353
SchI GAGTC 3 cut(s) 146, 166, 374
ScrFI CCNGG 1 cut(s) 478
SduI GDGCHC 2 cut(s) 215, 476
SetI ASST 5 cut(s) 44, 290, 407, 584, 633
SfaNI GCATC 2 cut(s) 43, 85
Sfr274I CTCGAG 1 cut(s) 208
SlaI CTCGAG 1 cut(s) 208
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
SpeI ACTAGT 1 cut(s) 395
Sse9I AATT 4 cut(s) 176, 416, 455, 673
SsiI CCGC 2 cut(s) 50, 312
SspI AATATT 1 cut(s) 366
SspMI CTAG 1 cut(s) 396
StyD4I CCNGG 1 cut(s) 476
StyI CCWWGG 1 cut(s) 405
TaaI ACNGT 4 cut(s) 277, 284, 512, 576
TaqI TCGA 5 cut(s) 209, 244, 255, 279, 383
TasI AATT 4 cut(s) 176, 416, 455, 673
TatI WGTACW 1 cut(s) 444
Tru1I TTAA 1 cut(s) 615
Tru9I TTAA 1 cut(s) 615
TscAI CASTG 1 cut(s) 522
TseI GCWGC 1 cut(s) 347
TspGWI ACGGA 1 cut(s) 478
TspRI CASTG 1 cut(s) 522
XapI RAATTY 3 cut(s) 416, 455, 673
XcmI CCANNNNNNNNNTGG 1 cut(s) 113
XhoI CTCGAG 1 cut(s) 208
XmiI GTMKAC 1 cut(s) 279
XspI CTAG 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.