Rroxscaffold_7G00207000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015534
Physical Location & Seq
Reverse (-)
56841196 .. 56846865
5670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00207000.1

Sequence Viewer

Length: 828 bp
ATGAGTCAACAGGAACAGAGAGAGCAGAAAGTACAGAAATGCTGCAGAGAGTTTCAAATATTTCTGAGGAGTGAGAACCTTCGCATTGGTGAAGGTGAAGTCTCCAAAATCATCATGGGGTCAAAATCGACGACGAAGAAGATGATCATCATCATCACGCTGTTGTTGGTTACGATGATGAGGTTTGTTGCGGATGCTGGAAGTGATACAAATGGTGTATTTGATCCTTGCTCAGATGCAACAATCCAAAGATGGGATGGTTTTACATTTGGTCTTGCATTTTCAAACAAAGACTCGTTCTTTTTCAATCAGACTCAATTTTCGCCCTGTGATACGCGTCTATCTCTCTCGAGCCCAGACAAGAAAGCACAACTTGCTGTGTTTCGACCCAAAGTCGATGAGATTTCCTTCCTTACCATCGACAGTAGCTCCTCTAATCCGGCTAAGGCAGGCGGGTACATGGTGGCATTTGCTGGACGCAAGTACGCAGCAAGATCACCCCCAATATTGGTCGCTGATGACTCGAATACCATAACTAGTTTCACCTTGGTACTTGAATTCAACAGGGGAATTCTTCAGAATTTGTACTGGAAGAAATTTGGGTGCAAAGCGTGCTCCGGGGACTACTCTGTCTGCCTCAATGGCGAGGACTGTGCAGTACCGAACTCAAAATGCAAAAGAAATGGTGGGACTTTTGACTGCAATCTAAGCATACAGTTGACCTTCTCAGGAACAGACAAAAATCTTGAAGTGCTTAACTCATGGTATGAGGTGAAAAAACTACAAAAATACTCGCTGTACAGCCTATTCAAGAATTTTCTGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

275

Amino Acids

30.83

Weight (kDa)

8.84

Isoelectric Point (pI)

39.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015534)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g07220
malus_domestica MD05G1072900.v1.1
prunus_persica Prupe.8G113200_v2.0.a1
pyrus_communis pycom05g06520
rosa_chinensis RchiOBHm_Chr6g0259741
rosa_laevigata RLG00000014512
rosa_multiflora Rmu_sc0002130.1_g000009 Rmu_sc0015614.1_g000002
rosa_roxburghii Rroxscaffold_7G00207000
rosa_rugosa Rorug05G0590300
rosa_samantha Rh6AG106700 Rh6BG102000 Rh6CG095700 Rh6DG089600
rosa_wichuraiana Rw0G013490 Rw6G009240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 629
AccII CGCG 1 cut(s) 337
AciI CCGC 2 cut(s) 191, 453
AclWI GGATC 1 cut(s) 218
AcsI RAATTY 5 cut(s) 557, 570, 580, 596, 814
AcuI CTGAAG 1 cut(s) 560
AfaI GTAC 7 cut(s) 33, 458, 485, 552, 587, 660, 800
AfiI CCNNNNNNNGG 2 cut(s) 253, 508
AflIII ACRYGT 1 cut(s) 335
AgsI TTSAA 7 cut(s) 56, 285, 307, 557, 562, 749, 811
AhdI GACNNNNNGTC 1 cut(s) 392
AhlI ACTAGT 1 cut(s) 536
AluBI AGCT 1 cut(s) 429
AluI AGCT 1 cut(s) 429
Alw21I GWGCWC 1 cut(s) 617
Alw26I GTCTC 1 cut(s) 106
AlwI GGATC 1 cut(s) 218
Ama87I CYCGRG 1 cut(s) 349
ApeKI GCWGC 2 cut(s) 42, 488
ApoI RAATTY 5 cut(s) 557, 570, 580, 596, 814
ArsI GACNNNNNNTTYG 2 cut(s) 304, 336
AsuC2I CCSGG 1 cut(s) 619
AsuHPI GGTGA 5 cut(s) 101, 107, 489, 535, 784
AvaI CYCGRG 1 cut(s) 349
BanII GRGCYC 1 cut(s) 356
Bbv12I GWGCWC 1 cut(s) 617
BbvI GCAGC 2 cut(s) 29, 500
BccI CCATC 3 cut(s) 246, 251, 425
BcgI CGANNNNNNTGC 2 cut(s) 635, 669
BclI TGATCA 1 cut(s) 144
BcnI CCSGG 1 cut(s) 619
BcoDI GTCTC 1 cut(s) 106
BcuI ACTAGT 1 cut(s) 536
BfaI CTAG 1 cut(s) 537
BfmI CTRYAG 1 cut(s) 43
BglI GCCNNNNNGGC 1 cut(s) 642
BisI GCNGC 2 cut(s) 43, 489
BlsI GCNGC 2 cut(s) 44, 490
Bme1390I CCNGG 1 cut(s) 619
BmeRI GACNNNNNGTC 1 cut(s) 392
BmeT110I CYCGRG 1 cut(s) 349
BmrFI CCNGG 1 cut(s) 619
BmsI GCATC 2 cut(s) 184, 226
Bpu10I CCTNAGC 1 cut(s) 444
BpuMI CCSGG 1 cut(s) 619
BsaBI GATNNNNATC 2 cut(s) 146, 149
BsaJI CCNNGG 2 cut(s) 546, 618
BsaXI ACNNNNNCTCC 2 cut(s) 413, 443
Bsc4I CCNNNNNNNGG 2 cut(s) 253, 508
Bse1I ACTGG 1 cut(s) 593
Bse8I GATNNNNATC 2 cut(s) 146, 149
BseDI CCNNGG 2 cut(s) 546, 618
BseGI GGATG 2 cut(s) 199, 262
BseJI GATNNNNATC 2 cut(s) 146, 149
BseLI CCNNNNNNNGG 2 cut(s) 253, 508
BseMII CTCAG 3 cut(s) 56, 246, 741
BseNI ACTGG 1 cut(s) 593
BseRI GAGGAG 2 cut(s) 82, 421
BseXI GCAGC 2 cut(s) 29, 500
BsgI GTGCAG 1 cut(s) 675
Bsh1236I CGCG 1 cut(s) 337
BsiHKAI GWGCWC 1 cut(s) 617
BsiHKCI CYCGRG 1 cut(s) 349
BsiSI CCGG 2 cut(s) 440, 618
BslFI GGGAC 2 cut(s) 635, 703
BslI CCNNNNNNNGG 2 cut(s) 253, 508
BsmAI GTCTC 1 cut(s) 106
BsmFI GGGAC 2 cut(s) 635, 703
BsoBI CYCGRG 1 cut(s) 349
Bsp1286I GDGCHC 2 cut(s) 356, 617
Bsp1407I TGTACA 1 cut(s) 798
Bsp143I GATC 3 cut(s) 144, 223, 494
BspACI CCGC 2 cut(s) 191, 453
BspCNI CTCAG 3 cut(s) 57, 245, 740
BspFNI CGCG 1 cut(s) 337
BspMAI CTGCAG 1 cut(s) 47
BspPI GGATC 1 cut(s) 218
BsrGI TGTACA 1 cut(s) 798
BsrI ACTGG 1 cut(s) 593
BssECI CCNNGG 2 cut(s) 546, 618
BssMI GATC 3 cut(s) 144, 223, 494
BssT1I CCWWGG 1 cut(s) 546
Bst4CI ACNGT 3 cut(s) 425, 653, 717
BstAPI GCANNNNNTGC 2 cut(s) 374, 612
BstAUI TGTACA 1 cut(s) 798
BstC8I GCNNGC 2 cut(s) 451, 613
BstDEI CTNAG 5 cut(s) 65, 232, 444, 707, 727
BstF5I GGATG 2 cut(s) 199, 262
BstFNI CGCG 1 cut(s) 337
BstKTI GATC 3 cut(s) 147, 226, 497
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 3 cut(s) 144, 223, 494
BstMWI GCNNNNNNNGC 4 cut(s) 374, 612, 642, 708
BstSCI CCNGG 1 cut(s) 617
BstSFI CTRYAG 1 cut(s) 43
BstUI CGCG 1 cut(s) 337
BstV1I GCAGC 2 cut(s) 29, 500
BtsCI GGATG 2 cut(s) 199, 262
Cac8I GCNNGC 2 cut(s) 451, 613
CseI GACGC 2 cut(s) 326, 486
Csp6I GTAC 7 cut(s) 32, 457, 484, 551, 586, 659, 799
CviAII CATG 3 cut(s) 115, 460, 762
CviJI RGCY 4 cut(s) 354, 429, 443, 804
CviKI_1 RGCY 4 cut(s) 354, 429, 443, 804
CviQI GTAC 7 cut(s) 32, 457, 484, 551, 586, 659, 799
DdeI CTNAG 5 cut(s) 65, 232, 444, 707, 727
DpnI GATC 3 cut(s) 146, 225, 496
DpnII GATC 3 cut(s) 144, 223, 494
DrdI GACNNNNNNGTC 1 cut(s) 629
DriI GACNNNNNGTC 1 cut(s) 392
DseDI GACNNNNNNGTC 1 cut(s) 629
Eam1105I GACNNNNNGTC 1 cut(s) 392
Eco130I CCWWGG 1 cut(s) 546
Eco24I GRGCYC 1 cut(s) 356
Eco57I CTGAAG 1 cut(s) 560
Eco88I CYCGRG 1 cut(s) 349
EcoRI GAATTC 2 cut(s) 557, 570
EcoT14I CCWWGG 1 cut(s) 546
EcoT38I GRGCYC 1 cut(s) 356
ErhI CCWWGG 1 cut(s) 546
FaeI CATG 3 cut(s) 118, 463, 765
FaiI YATR 7 cut(s) 116, 461, 533, 713, 763, 768, 826
FalI AAGNNNNNCTT 2 cut(s) 357, 389
FaqI GGGAC 2 cut(s) 635, 703
FatI CATG 3 cut(s) 114, 459, 761
FauI CCCGC 1 cut(s) 446
FbaI TGATCA 1 cut(s) 144
Fnu4HI GCNGC 2 cut(s) 43, 489
FokI GGATG 2 cut(s) 206, 269
FriOI GRGCYC 1 cut(s) 356
Fsp4HI GCNGC 2 cut(s) 43, 489
FspBI CTAG 1 cut(s) 537
GluI GCNGC 2 cut(s) 43, 489
HapII CCGG 2 cut(s) 440, 618
HgaI GACGC 2 cut(s) 326, 486
Hin1II CATG 3 cut(s) 118, 463, 765
HincII GTYRAC 2 cut(s) 8, 720
HindII GTYRAC 2 cut(s) 8, 720
HinfI GANTC 4 cut(s) 4, 293, 313, 521
HpaII CCGG 2 cut(s) 440, 618
HphI GGTGA 5 cut(s) 101, 107, 489, 535, 784
Hpy166II GTNNAC 2 cut(s) 8, 720
Hpy188I TCNGA 5 cut(s) 66, 235, 312, 579, 822
Hpy188III TCNNGA 4 cut(s) 349, 729, 746, 811
Hpy8I GTNNAC 2 cut(s) 8, 720
Hpy99I CGWCG 2 cut(s) 133, 136
HpyAV CCTTC 4 cut(s) 86, 89, 418, 733
HpyCH4III ACNGT 3 cut(s) 425, 653, 717
HpyCH4V TGCA 7 cut(s) 45, 239, 278, 606, 656, 675, 702
HpyF10VI GCNNNNNNNGC 4 cut(s) 374, 612, 642, 708
HpyF3I CTNAG 5 cut(s) 65, 232, 444, 707, 727
Hsp92II CATG 3 cut(s) 118, 463, 765
Ksp22I TGATCA 1 cut(s) 144
Kzo9I GATC 3 cut(s) 144, 223, 494
LmnI GCTCC 2 cut(s) 434, 620
Lsp1109I GCAGC 2 cut(s) 29, 500
LweI GCATC 2 cut(s) 184, 226
MaeI CTAG 1 cut(s) 537
MaeIII GTNAC 1 cut(s) 169
MalI GATC 3 cut(s) 146, 225, 496
MboI GATC 3 cut(s) 144, 223, 494
MboII GAAGA 4 cut(s) 148, 151, 566, 604
MhlI GDGCHC 2 cut(s) 356, 617
MluCI AATT 6 cut(s) 317, 557, 570, 580, 596, 814
MluI ACGCGT 1 cut(s) 335
MlyI GAGTC 4 cut(s) 13, 287, 307, 515
MnlI CCTC 6 cut(s) 60, 174, 442, 640, 647, 763
MseI TTAA 1 cut(s) 756
MspI CCGG 2 cut(s) 440, 618
MspR9I CCNGG 1 cut(s) 619
MvnI CGCG 1 cut(s) 337
MwoI GCNNNNNNNGC 4 cut(s) 374, 612, 642, 708
NciI CCSGG 1 cut(s) 619
NdeII GATC 3 cut(s) 144, 223, 494
NlaIII CATG 3 cut(s) 118, 463, 765
PaeR7I CTCGAG 1 cut(s) 349
PkrI GCNGC 2 cut(s) 44, 490
PleI GAGTC 4 cut(s) 12, 287, 307, 515
PpsI GAGTC 4 cut(s) 12, 287, 307, 515
PstI CTGCAG 1 cut(s) 47
RsaI GTAC 7 cut(s) 33, 458, 485, 552, 587, 660, 800
RsaNI GTAC 7 cut(s) 32, 457, 484, 551, 586, 659, 799
SaqAI TTAA 1 cut(s) 756
SatI GCNGC 2 cut(s) 43, 489
Sau3AI GATC 3 cut(s) 144, 223, 494
SchI GAGTC 4 cut(s) 13, 287, 307, 515
ScrFI CCNGG 1 cut(s) 619
SduI GDGCHC 2 cut(s) 356, 617
SetI ASST 7 cut(s) 81, 97, 185, 431, 548, 725, 774
SfaNI GCATC 2 cut(s) 184, 226
SfcI CTRYAG 1 cut(s) 43
Sfr274I CTCGAG 1 cut(s) 349
SlaI CTCGAG 1 cut(s) 349
SmlI CTYRAG 1 cut(s) 349
SmoI CTYRAG 1 cut(s) 349
SpeI ACTAGT 1 cut(s) 536
Sse9I AATT 6 cut(s) 317, 557, 570, 580, 596, 814
SsiI CCGC 2 cut(s) 191, 453
SspI AATATT 2 cut(s) 60, 507
SspMI CTAG 1 cut(s) 537
StyD4I CCNGG 1 cut(s) 617
StyI CCWWGG 1 cut(s) 546
TaaI ACNGT 3 cut(s) 425, 653, 717
TaqI TCGA 6 cut(s) 128, 350, 385, 396, 420, 524
TasI AATT 6 cut(s) 317, 557, 570, 580, 596, 814
TatI WGTACW 3 cut(s) 31, 585, 798
Tru1I TTAA 1 cut(s) 756
Tru9I TTAA 1 cut(s) 756
TseI GCWGC 2 cut(s) 42, 488
XapI RAATTY 5 cut(s) 557, 570, 580, 596, 814
XcmI CCANNNNNNNNNTGG 2 cut(s) 112, 254
XhoI CTCGAG 1 cut(s) 349
XspI CTAG 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.