Rh6BG102000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0015534
Physical Location & Seq
Reverse (-)
15861807 .. 15863169
1363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG102000.1

Sequence Viewer

Length: 714 bp
ATGGGGTCGAAATCGACGACAAAGAAGATGATGATCACCATCATGCTGTTGTTGGTTACGATGATGAGGTTTGTTGCGGATGCTGGAAGTGATACAAATGGTGTATTTGATCCTTGCTCAGATGCAACAATCCAAAGATGGGATGGTTTTACATTTGGTCTTGCATTTTCAAACAAAGACTCGTTCTTTTTCAATCAGACTCAATTTTCGCCCTGTGATACGCGTCTATCTCTCTCGAGCCCAGACAAGAAAGCACAACTTGCAGTGTTTCGACCCAAAGTCGATGAGATTTCCTTCCTTACCATCGACAGTAGCTCCTCTAATCCGGCTAAGGCAGGCGGGTACATGGTGGCATTTGCTGGACGCAAGTATGCAGCAAGATCACCCCCAATATTGGTCGCTGATGACTCGAATACCATAACTAGTTTCACCTTGGTACTTGAATTCAACAGGGGTATTCTTCAGAACTTGTACTGGAAGAAATTTGGGTGCAAAGCGTGCTCCGGGGACTACTCTGTCTGCCTCAATGGCCAAGACTGTGCAGTACCGAACTCAAAATGCAAAAGCAATGGTGGGACTTTTGACTGCAATCTAAGCATACAGTTGACCTTCTCAGGAACAGACAAAAATCTTGAAGTGCTTAACTCATGGTATGAGGTGGAAAAACTACAAAAATACTCGCTTTACAGCCTATTCAAGAATTTTCTGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

26.25

Weight (kDa)

8.56

Isoelectric Point (pI)

33.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015534)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g07220
malus_domestica MD05G1072900.v1.1
prunus_persica Prupe.8G113200_v2.0.a1
pyrus_communis pycom05g06520
rosa_chinensis RchiOBHm_Chr6g0259741
rosa_laevigata RLG00000014512
rosa_multiflora Rmu_sc0002130.1_g000009 Rmu_sc0015614.1_g000002
rosa_roxburghii Rroxscaffold_7G00207000
rosa_rugosa Rorug05G0590300
rosa_samantha Rh6AG106700 Rh6BG102000 Rh6CG095700 Rh6DG089600
rosa_wichuraiana Rw0G013490 Rw6G009240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 515
AccII CGCG 1 cut(s) 223
AciI CCGC 2 cut(s) 77, 339
AclWI GGATC 1 cut(s) 104
AcoI YGGCCR 1 cut(s) 529
AcsI RAATTY 3 cut(s) 443, 482, 700
AcuI CTGAAG 1 cut(s) 446
AfaI GTAC 4 cut(s) 344, 438, 473, 546
AfiI CCNNNNNNNGG 2 cut(s) 139, 394
AflIII ACRYGT 1 cut(s) 221
AgsI TTSAA 6 cut(s) 171, 193, 443, 448, 635, 697
AhdI GACNNNNNGTC 1 cut(s) 278
AhlI ACTAGT 1 cut(s) 422
AluBI AGCT 1 cut(s) 315
AluI AGCT 1 cut(s) 315
Alw21I GWGCWC 1 cut(s) 503
AlwI GGATC 1 cut(s) 104
Ama87I CYCGRG 1 cut(s) 235
AoxI GGCC 1 cut(s) 529
ApeKI GCWGC 1 cut(s) 374
ApoI RAATTY 3 cut(s) 443, 482, 700
ArsI GACNNNNNNTTYG 2 cut(s) 190, 222
AsuC2I CCSGG 1 cut(s) 505
AsuHPI GGTGA 3 cut(s) 28, 375, 421
AvaI CYCGRG 1 cut(s) 235
BalI TGGCCA 1 cut(s) 531
BanII GRGCYC 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 503
BbvI GCAGC 1 cut(s) 386
BccI CCATC 4 cut(s) 47, 132, 137, 311
BclI TGATCA 1 cut(s) 33
BcnI CCSGG 1 cut(s) 505
BcuI ACTAGT 1 cut(s) 422
BfaI CTAG 1 cut(s) 423
BglI GCCNNNNNGGC 1 cut(s) 528
BisI GCNGC 1 cut(s) 375
BlsI GCNGC 1 cut(s) 376
Bme1390I CCNGG 1 cut(s) 505
BmeRI GACNNNNNGTC 1 cut(s) 278
BmeT110I CYCGRG 1 cut(s) 235
BmrFI CCNGG 1 cut(s) 505
BmsI GCATC 2 cut(s) 70, 112
Bpu10I CCTNAGC 1 cut(s) 330
BpuMI CCSGG 1 cut(s) 505
BsaBI GATNNNNATC 2 cut(s) 32, 38
BsaJI CCNNGG 2 cut(s) 432, 504
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 394
Bse1I ACTGG 1 cut(s) 479
Bse3DI GCAATG 1 cut(s) 574
Bse8I GATNNNNATC 2 cut(s) 32, 38
BseDI CCNNGG 2 cut(s) 432, 504
BseGI GGATG 2 cut(s) 85, 148
BseJI GATNNNNATC 2 cut(s) 32, 38
BseLI CCNNNNNNNGG 2 cut(s) 139, 394
BseMI GCAATG 1 cut(s) 574
BseMII CTCAG 2 cut(s) 132, 627
BseNI ACTGG 1 cut(s) 479
BseRI GAGGAG 1 cut(s) 307
BseXI GCAGC 1 cut(s) 386
BsgI GTGCAG 1 cut(s) 561
Bsh1236I CGCG 1 cut(s) 223
BshFI GGCC 1 cut(s) 531
BsiHKAI GWGCWC 1 cut(s) 503
BsiHKCI CYCGRG 1 cut(s) 235
BsiSI CCGG 2 cut(s) 326, 504
BslFI GGGAC 2 cut(s) 521, 589
BslI CCNNNNNNNGG 2 cut(s) 139, 394
BsmFI GGGAC 2 cut(s) 521, 589
BsnI GGCC 1 cut(s) 531
BsoBI CYCGRG 1 cut(s) 235
Bsp1286I GDGCHC 2 cut(s) 242, 503
Bsp143I GATC 3 cut(s) 33, 109, 380
BspACI CCGC 2 cut(s) 77, 339
BspANI GGCC 1 cut(s) 531
BspCNI CTCAG 2 cut(s) 131, 626
BspFNI CGCG 1 cut(s) 223
BspPI GGATC 1 cut(s) 104
BsrDI GCAATG 1 cut(s) 574
BsrI ACTGG 1 cut(s) 479
BssECI CCNNGG 2 cut(s) 432, 504
BssMI GATC 3 cut(s) 33, 109, 380
BssT1I CCWWGG 1 cut(s) 432
Bst4CI ACNGT 3 cut(s) 311, 539, 603
BstAPI GCANNNNNTGC 2 cut(s) 260, 498
BstC8I GCNNGC 2 cut(s) 337, 499
BstDEI CTNAG 4 cut(s) 118, 330, 593, 613
BstF5I GGATG 2 cut(s) 85, 148
BstFNI CGCG 1 cut(s) 223
BstKTI GATC 3 cut(s) 36, 112, 383
BstMBI GATC 3 cut(s) 33, 109, 380
BstMWI GCNNNNNNNGC 4 cut(s) 260, 498, 528, 594
BstSCI CCNGG 1 cut(s) 503
BstUI CGCG 1 cut(s) 223
BstV1I GCAGC 1 cut(s) 386
BsuRI GGCC 1 cut(s) 531
BtsCI GGATG 2 cut(s) 85, 148
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 1 cut(s) 270
Cac8I GCNNGC 2 cut(s) 337, 499
CseI GACGC 2 cut(s) 212, 372
Csp6I GTAC 4 cut(s) 343, 437, 472, 545
CviAII CATG 3 cut(s) 43, 346, 648
CviJI RGCY 5 cut(s) 240, 315, 329, 531, 690
CviKI_1 RGCY 5 cut(s) 240, 315, 329, 531, 690
CviQI GTAC 4 cut(s) 343, 437, 472, 545
DdeI CTNAG 4 cut(s) 118, 330, 593, 613
DpnI GATC 3 cut(s) 35, 111, 382
DpnII GATC 3 cut(s) 33, 109, 380
DrdI GACNNNNNNGTC 1 cut(s) 515
DriI GACNNNNNGTC 1 cut(s) 278
DseDI GACNNNNNNGTC 1 cut(s) 515
EaeI YGGCCR 1 cut(s) 529
Eam1105I GACNNNNNGTC 1 cut(s) 278
Eco130I CCWWGG 1 cut(s) 432
Eco24I GRGCYC 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 446
Eco88I CYCGRG 1 cut(s) 235
EcoRI GAATTC 1 cut(s) 443
EcoT14I CCWWGG 1 cut(s) 432
EcoT38I GRGCYC 1 cut(s) 242
ErhI CCWWGG 1 cut(s) 432
FaeI CATG 3 cut(s) 46, 349, 651
FaiI YATR 8 cut(s) 44, 347, 372, 419, 599, 649, 654, 712
FalI AAGNNNNNCTT 2 cut(s) 243, 275
FaqI GGGAC 2 cut(s) 521, 589
FatI CATG 3 cut(s) 42, 345, 647
FauI CCCGC 1 cut(s) 332
FbaI TGATCA 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 375
FokI GGATG 2 cut(s) 92, 155
FriOI GRGCYC 1 cut(s) 242
Fsp4HI GCNGC 1 cut(s) 375
FspBI CTAG 1 cut(s) 423
GluI GCNGC 1 cut(s) 375
HaeIII GGCC 1 cut(s) 531
HapII CCGG 2 cut(s) 326, 504
HgaI GACGC 2 cut(s) 212, 372
Hin1II CATG 3 cut(s) 46, 349, 651
HincII GTYRAC 1 cut(s) 606
HindII GTYRAC 1 cut(s) 606
HinfI GANTC 3 cut(s) 179, 199, 407
HpaII CCGG 2 cut(s) 326, 504
HphI GGTGA 3 cut(s) 28, 375, 421
Hpy166II GTNNAC 1 cut(s) 606
Hpy188I TCNGA 4 cut(s) 121, 198, 465, 708
Hpy188III TCNNGA 4 cut(s) 235, 615, 632, 697
Hpy8I GTNNAC 1 cut(s) 606
Hpy99I CGWCG 1 cut(s) 19
HpyAV CCTTC 2 cut(s) 304, 619
HpyCH4III ACNGT 3 cut(s) 311, 539, 603
HpyCH4V TGCA 8 cut(s) 125, 164, 263, 374, 492, 542, 561, 588
HpyF10VI GCNNNNNNNGC 4 cut(s) 260, 498, 528, 594
HpyF3I CTNAG 4 cut(s) 118, 330, 593, 613
Hsp92II CATG 3 cut(s) 46, 349, 651
Ksp22I TGATCA 1 cut(s) 33
Kzo9I GATC 3 cut(s) 33, 109, 380
LmnI GCTCC 2 cut(s) 320, 506
Lsp1109I GCAGC 1 cut(s) 386
LweI GCATC 2 cut(s) 70, 112
MaeI CTAG 1 cut(s) 423
MaeIII GTNAC 1 cut(s) 55
MalI GATC 3 cut(s) 35, 111, 382
MboI GATC 3 cut(s) 33, 109, 380
MboII GAAGA 3 cut(s) 37, 452, 490
MhlI GDGCHC 2 cut(s) 242, 503
MlsI TGGCCA 1 cut(s) 531
MluCI AATT 4 cut(s) 203, 443, 482, 700
MluI ACGCGT 1 cut(s) 221
MluNI TGGCCA 1 cut(s) 531
MlyI GAGTC 3 cut(s) 173, 193, 401
MnlI CCTC 4 cut(s) 60, 328, 533, 649
Mox20I TGGCCA 1 cut(s) 531
MscI TGGCCA 1 cut(s) 531
MseI TTAA 1 cut(s) 642
MslI CAYNNNNRTG 1 cut(s) 41
Msp20I TGGCCA 1 cut(s) 531
MspI CCGG 2 cut(s) 326, 504
MspR9I CCNGG 1 cut(s) 505
MvnI CGCG 1 cut(s) 223
MwoI GCNNNNNNNGC 4 cut(s) 260, 498, 528, 594
NciI CCSGG 1 cut(s) 505
NdeII GATC 3 cut(s) 33, 109, 380
NlaIII CATG 3 cut(s) 46, 349, 651
PaeR7I CTCGAG 1 cut(s) 235
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PkrI GCNGC 1 cut(s) 376
PleI GAGTC 3 cut(s) 173, 193, 401
PpsI GAGTC 3 cut(s) 173, 193, 401
RsaI GTAC 4 cut(s) 344, 438, 473, 546
RsaNI GTAC 4 cut(s) 343, 437, 472, 545
RseI CAYNNNNRTG 1 cut(s) 41
SaqAI TTAA 1 cut(s) 642
SatI GCNGC 1 cut(s) 375
Sau3AI GATC 3 cut(s) 33, 109, 380
SchI GAGTC 3 cut(s) 173, 193, 401
ScrFI CCNGG 1 cut(s) 505
SduI GDGCHC 2 cut(s) 242, 503
SetI ASST 5 cut(s) 71, 317, 434, 611, 660
SfaNI GCATC 2 cut(s) 70, 112
Sfr274I CTCGAG 1 cut(s) 235
SlaI CTCGAG 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 235
SmoI CTYRAG 1 cut(s) 235
SpeI ACTAGT 1 cut(s) 422
Sse9I AATT 4 cut(s) 203, 443, 482, 700
SsiI CCGC 2 cut(s) 77, 339
SspI AATATT 1 cut(s) 393
SspMI CTAG 1 cut(s) 423
StyD4I CCNGG 1 cut(s) 503
StyI CCWWGG 1 cut(s) 432
TaaI ACNGT 3 cut(s) 311, 539, 603
TaqI TCGA 7 cut(s) 8, 14, 236, 271, 282, 306, 410
TasI AATT 4 cut(s) 203, 443, 482, 700
TatI WGTACW 1 cut(s) 471
Tru1I TTAA 1 cut(s) 642
Tru9I TTAA 1 cut(s) 642
TscAI CASTG 1 cut(s) 270
TseI GCWGC 1 cut(s) 374
TspRI CASTG 1 cut(s) 270
XapI RAATTY 3 cut(s) 443, 482, 700
XcmI CCANNNNNNNNNTGG 1 cut(s) 140
XhoI CTCGAG 1 cut(s) 235
XspI CTAG 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.