Prupe.8G113200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0015534
Physical Location & Seq
Forward (+)
14169192 .. 14171466
2275 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G113200.1

Sequence Viewer

Length: 702 bp
ATGGAAACAACAACAATGGTGAATATCAAGATGATCATGGCCATGCTGTTGATGGTGATGATGGTGTTTGTTGGAGATGCAGCTGATACAAATAGTGTATATGATCCTTGCTCAGATGCAAAAATCCGGAGATTGGATGGTTTTACTTTTGGTCTTGCATTTTCAAAGAAAGACTCATTCGCATTCAACCAGACTCAGCTTTCACCCTGTGATAGTCGTCTAAACCTCGCAGGAAATAATGCACAACTTGCTGTGTTTAGGCCAAAGGTTGATGAGATGTCTCTCCTAACTATCAACAGCAGCACCTTCAGCCCGATTAACGCTGGTGGCTATATGGTAGCGTTCGCCGGACGCAAGTATGCAGCGAGATCACTCCCAACATTGATTGCTGATGAGTCAAACACCATAACTAGTTTCACCTTGGTACTTGAATTCCAAAGGGGCACTCTTCAAAACTTGTATTGGAAGAAATTTGGGTGCAAGGCATGCTCCGGGGACTATTCTGTTTGCCTCAACAACGAAGATTGTGCTGTGCCAAACTCAAAGTGCAAAAGCAGTGGGGGATCTTTTGACTGCAATTTAAGCATACAGTTGGCATTCTCAGGAACAGACAAGCATCTTCAAGTGCTTAACTCCTGGTATGAGGTGAGAAATCTTCGAAGCTACTCGCTGTATGGCCTATTCTCCAAGCTTCTGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

234

Amino Acids

25.76

Weight (kDa)

8.38

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015534)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g07220
malus_domestica MD05G1072900.v1.1
prunus_persica Prupe.8G113200_v2.0.a1
pyrus_communis pycom05g06520
rosa_chinensis RchiOBHm_Chr6g0259741
rosa_laevigata RLG00000014512
rosa_multiflora Rmu_sc0002130.1_g000009 Rmu_sc0015614.1_g000002
rosa_roxburghii Rroxscaffold_7G00207000
rosa_rugosa Rorug05G0590300
rosa_samantha Rh6AG106700 Rh6BG102000 Rh6CG095700 Rh6DG089600
rosa_wichuraiana Rw0G013490 Rw6G009240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 126
AclWI GGATC 2 cut(s) 98, 571
AcoI YGGCCR 1 cut(s) 39
AcsI RAATTY 2 cut(s) 431, 470
AcuI CTGAAG 1 cut(s) 292
AdeI CACNNNGTG 1 cut(s) 209
AfaI GTAC 1 cut(s) 426
AfiI CCNNNNNNNGG 1 cut(s) 133
AgsI TTSAA 5 cut(s) 165, 187, 431, 452, 623
AhlI ACTAGT 1 cut(s) 410
AjnI CCWGG 1 cut(s) 635
AluBI AGCT 4 cut(s) 83, 199, 663, 691
AluI AGCT 4 cut(s) 83, 199, 663, 691
Alw26I GTCTC 1 cut(s) 285
AlwI GGATC 2 cut(s) 98, 571
Aor13HI TCCGGA 1 cut(s) 126
AoxI GGCC 3 cut(s) 39, 260, 676
ApeKI GCWGC 3 cut(s) 80, 300, 362
ApoI RAATTY 2 cut(s) 431, 470
AsuC2I CCSGG 1 cut(s) 493
AsuHPI GGTGA 5 cut(s) 31, 67, 195, 409, 658
AsuII TTCGAA 1 cut(s) 658
BaeGI GKGCMC 1 cut(s) 446
BalI TGGCCA 1 cut(s) 41
BbvI GCAGC 3 cut(s) 92, 312, 374
BccI CCATC 3 cut(s) 46, 55, 131
BcgI CGANNNNNNTGC 2 cut(s) 509, 543
BciT130I CCWGG 1 cut(s) 637
BclI TGATCA 1 cut(s) 33
BcnI CCSGG 1 cut(s) 493
BcoDI GTCTC 1 cut(s) 285
BcuI ACTAGT 1 cut(s) 410
BfaI CTAG 1 cut(s) 411
BfmI CTRYAG 1 cut(s) 695
BisI GCNGC 3 cut(s) 81, 301, 363
BlsI GCNGC 3 cut(s) 82, 302, 364
Bme1390I CCNGG 2 cut(s) 493, 637
BmrFI CCNGG 2 cut(s) 493, 637
BmsI GCATC 3 cut(s) 67, 106, 625
Bpu14I TTCGAA 1 cut(s) 658
BpuMI CCSGG 1 cut(s) 493
BsaJI CCNNGG 2 cut(s) 420, 492
BsaWI WCCGGW 1 cut(s) 126
Bsc4I CCNNNNNNNGG 1 cut(s) 133
BseAI TCCGGA 1 cut(s) 126
BseBI CCWGG 1 cut(s) 637
BseDI CCNNGG 2 cut(s) 420, 492
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMII CTCAG 3 cut(s) 126, 209, 615
BseSI GKGCMC 1 cut(s) 446
BseXI GCAGC 3 cut(s) 92, 312, 374
BshFI GGCC 3 cut(s) 41, 262, 678
BsiSI CCGG 3 cut(s) 127, 348, 492
BslFI GGGAC 1 cut(s) 509
BslI CCNNNNNNNGG 1 cut(s) 133
BsmAI GTCTC 1 cut(s) 285
BsmFI GGGAC 1 cut(s) 509
BsmI GAATGC 2 cut(s) 182, 596
BsnI GGCC 3 cut(s) 41, 262, 678
Bsp119I TTCGAA 1 cut(s) 658
Bsp1286I GDGCHC 1 cut(s) 446
Bsp13I TCCGGA 1 cut(s) 126
Bsp143I GATC 4 cut(s) 33, 103, 368, 563
BspANI GGCC 3 cut(s) 41, 262, 678
BspCNI CTCAG 3 cut(s) 125, 208, 614
BspEI TCCGGA 1 cut(s) 126
BspMAI CTGCAG 1 cut(s) 699
BspPI GGATC 2 cut(s) 98, 571
BspT104I TTCGAA 1 cut(s) 658
BssECI CCNNGG 2 cut(s) 420, 492
BssMI GATC 4 cut(s) 33, 103, 368, 563
BssT1I CCWWGG 1 cut(s) 420
Bst2UI CCWGG 1 cut(s) 637
Bst4CI ACNGT 1 cut(s) 591
Bst6I CTCTTC 1 cut(s) 453
BstAPI GCANNNNNTGC 2 cut(s) 248, 486
BstBI TTCGAA 1 cut(s) 658
BstC8I GCNNGC 1 cut(s) 487
BstDEI CTNAG 3 cut(s) 112, 195, 601
BstF5I GGATG 1 cut(s) 142
BstKTI GATC 4 cut(s) 36, 106, 371, 566
BstMAI GTCTC 1 cut(s) 285
BstMBI GATC 4 cut(s) 33, 103, 368, 563
BstMWI GCNNNNNNNGC 4 cut(s) 248, 309, 486, 582
BstNI CCWGG 1 cut(s) 637
BstNSI RCATGY 1 cut(s) 489
BstSCI CCNGG 2 cut(s) 491, 635
BstSFI CTRYAG 1 cut(s) 695
BstSLI GKGCMC 1 cut(s) 446
BstV1I GCAGC 3 cut(s) 92, 312, 374
BstX2I RGATCY 1 cut(s) 563
BstYI RGATCY 1 cut(s) 563
BsuRI GGCC 3 cut(s) 41, 262, 678
BtsCI GGATG 1 cut(s) 142
BtsI GCAGTG 1 cut(s) 562
BtsIMutI CAGTG 1 cut(s) 562
Cac8I GCNNGC 1 cut(s) 487
CseI GACGC 1 cut(s) 360
Csp6I GTAC 1 cut(s) 425
CspCI CAANNNNNGTGG 2 cut(s) 538, 573
CviAII CATG 3 cut(s) 37, 43, 486
CviJI RGCY 9 cut(s) 41, 83, 199, 262, 312, 330, 663, 678, 691
CviKI_1 RGCY 9 cut(s) 41, 83, 199, 262, 312, 330, 663, 678, 691
CviQI GTAC 1 cut(s) 425
DdeI CTNAG 3 cut(s) 112, 195, 601
DpnI GATC 4 cut(s) 35, 105, 370, 565
DpnII GATC 4 cut(s) 33, 103, 368, 563
DraIII CACNNNGTG 1 cut(s) 209
EaeI YGGCCR 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 453
EarI CTCTTC 1 cut(s) 453
Eco130I CCWWGG 1 cut(s) 420
Eco57I CTGAAG 1 cut(s) 292
EcoRI GAATTC 1 cut(s) 431
EcoRII CCWGG 1 cut(s) 635
EcoT14I CCWWGG 1 cut(s) 420
ErhI CCWWGG 1 cut(s) 420
FaeI CATG 3 cut(s) 40, 46, 489
FaqI GGGAC 1 cut(s) 509
FatI CATG 3 cut(s) 36, 42, 485
FbaI TGATCA 1 cut(s) 33
Fnu4HI GCNGC 3 cut(s) 81, 301, 363
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 3 cut(s) 81, 301, 363
FspBI CTAG 1 cut(s) 411
GluI GCNGC 3 cut(s) 81, 301, 363
HaeIII GGCC 3 cut(s) 41, 262, 678
HapII CCGG 3 cut(s) 127, 348, 492
HgaI GACGC 1 cut(s) 360
Hin1II CATG 3 cut(s) 40, 46, 489
HindIII AAGCTT 1 cut(s) 689
HinfI GANTC 3 cut(s) 173, 193, 395
HpaII CCGG 3 cut(s) 127, 348, 492
HphI GGTGA 5 cut(s) 31, 67, 195, 409, 658
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 3 cut(s) 28, 127, 603
HpyAV CCTTC 1 cut(s) 316
HpyCH4III ACNGT 1 cut(s) 591
HpyCH4V TGCA 9 cut(s) 80, 119, 158, 242, 362, 480, 549, 576, 697
HpyF10VI GCNNNNNNNGC 4 cut(s) 248, 309, 486, 582
HpyF3I CTNAG 3 cut(s) 112, 195, 601
Hsp92II CATG 3 cut(s) 40, 46, 489
Kpn2I TCCGGA 1 cut(s) 126
Ksp22I TGATCA 1 cut(s) 33
Kzo9I GATC 4 cut(s) 33, 103, 368, 563
LmnI GCTCC 1 cut(s) 494
Lsp1109I GCAGC 3 cut(s) 92, 312, 374
LweI GCATC 3 cut(s) 67, 106, 625
MaeI CTAG 1 cut(s) 411
MalI GATC 4 cut(s) 35, 105, 370, 565
MboI GATC 4 cut(s) 33, 103, 368, 563
MboII GAAGA 5 cut(s) 440, 478, 533, 611, 647
MflI RGATCY 1 cut(s) 563
MhlI GDGCHC 1 cut(s) 446
MlsI TGGCCA 1 cut(s) 41
MluCI AATT 3 cut(s) 431, 470, 577
MluNI TGGCCA 1 cut(s) 41
MlyI GAGTC 3 cut(s) 167, 187, 404
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 3 cut(s) 236, 521, 637
Mox20I TGGCCA 1 cut(s) 41
MroI TCCGGA 1 cut(s) 126
MscI TGGCCA 1 cut(s) 41
MseI TTAA 3 cut(s) 318, 581, 630
MslI CAYNNNNRTG 1 cut(s) 41
Msp20I TGGCCA 1 cut(s) 41
MspA1I CMGCKG 1 cut(s) 83
MspI CCGG 3 cut(s) 127, 348, 492
MspR9I CCNGG 2 cut(s) 493, 637
Mva1269I GAATGC 2 cut(s) 182, 596
MvaI CCWGG 1 cut(s) 637
MwoI GCNNNNNNNGC 4 cut(s) 248, 309, 486, 582
NciI CCSGG 1 cut(s) 493
NdeII GATC 4 cut(s) 33, 103, 368, 563
NlaIII CATG 3 cut(s) 40, 46, 489
NspI RCATGY 1 cut(s) 489
NspV TTCGAA 1 cut(s) 658
PaeI GCATGC 1 cut(s) 489
PctI GAATGC 2 cut(s) 182, 596
PkrI GCNGC 3 cut(s) 82, 302, 364
PleI GAGTC 3 cut(s) 167, 187, 403
PpsI GAGTC 3 cut(s) 167, 187, 403
Psp6I CCWGG 1 cut(s) 635
PspGI CCWGG 1 cut(s) 635
PstI CTGCAG 1 cut(s) 699
PsuI RGATCY 1 cut(s) 563
PvuII CAGCTG 1 cut(s) 83
RsaI GTAC 1 cut(s) 426
RsaNI GTAC 1 cut(s) 425
RseI CAYNNNNRTG 1 cut(s) 41
SaqAI TTAA 3 cut(s) 318, 581, 630
SatI GCNGC 3 cut(s) 81, 301, 363
Sau3AI GATC 4 cut(s) 33, 103, 368, 563
SchI GAGTC 3 cut(s) 167, 187, 404
ScrFI CCNGG 2 cut(s) 493, 637
SduI GDGCHC 1 cut(s) 446
SetI ASST 9 cut(s) 85, 201, 228, 270, 308, 422, 648, 665, 693
SfaNI GCATC 3 cut(s) 67, 106, 625
SfcI CTRYAG 1 cut(s) 695
SfuI TTCGAA 1 cut(s) 658
SmiMI CAYNNNNRTG 1 cut(s) 41
SpeI ACTAGT 1 cut(s) 410
SphI GCATGC 1 cut(s) 489
Sse9I AATT 3 cut(s) 431, 470, 577
SspMI CTAG 1 cut(s) 411
StyD4I CCNGG 2 cut(s) 491, 635
StyI CCWWGG 1 cut(s) 420
TaaI ACNGT 1 cut(s) 591
TaqI TCGA 1 cut(s) 658
TasI AATT 3 cut(s) 431, 470, 577
Tru1I TTAA 3 cut(s) 318, 581, 630
Tru9I TTAA 3 cut(s) 318, 581, 630
TscAI CASTG 1 cut(s) 562
TseI GCWGC 3 cut(s) 80, 300, 362
TspRI CASTG 1 cut(s) 562
XapI RAATTY 2 cut(s) 431, 470
XceI RCATGY 1 cut(s) 489
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
XspI CTAG 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.