FvH4_2g07960

C2H2-type zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0017239
Physical Location & Seq
Forward (+)
6858460 .. 6860291
1832 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g07960.t1

Sequence Viewer

Length: 1479 bp
ATGGATACTGATCACAAACAAACTCAGGTACTTCTTCCCAACCCCATCGTTCCACAACAACCCACTAAGATGCCGACTCCGCCGGAGGCTTTGAATCACATCTGTAATGTTTGCCACAAGGGATTCCGGTCAGGCCAAGCCTTGGGAGGTCACAAGAGTATGCACTTCCGCGAGAGCGAGGCAATCGCTAGTGCTATTGCTACTACCAGTGACCTAGTTTGTTGTCTCTCTTGCGGCATGAACTTCTACTCCAAGGAAGCGCTGTTTCGACACCTGAGGTCTCACAATCAAAGTCTGTCCCCTCAGGGAGTCTATAACAGCAGCAGCTCTTCTTCCACTGTGTCTGATCACTCTGATGAGGCTATGTTTGATGATGATGGGGTAGATTCGGGTTTCGATTTGTCGAAAACTCTACCTTTAGGTTGGTCTTGCACTGGAAAGAGGAAAAGGACATCCTCTGACTTCTCTGGCTCTGATGAAACTGCTGTGGATTCGAGTCCCGGATTGGAACTGGTGACTTTTGATAAGAAACTGGAAGCGGAGGAGTTCAGGGGTCTTCTGATGTTGGCTGAGGTATGTGCAGAGGAGGCTAGTGGCAGACCTTTGGTTGATCATGACCATGTTTATGATGATGAGATCGAAATAAGGTATGTCGAAATCAAATGCAAGAGGAGGCGGCTGAATAATGAACATGAGACAAGATGGCTTGCAACTGATCGTTATGATTACAATTGCAATGACATTGATGAGTTTAGATGCAAGCTTTGCAATAAAACATTCACAAGTTACCAAGCTTTGGGAGGTCACATGACAAGCCATAACCGGCTCAAGAACAACACCGCGGATCCTGATCATGACAGTTTTAGTTTCGAATGTAAGAGTGAACAACATCCTCATCCTCATCCAGTGGTTAATGTATACCGCTGCAATAATTGCGATAGAACATTCTCAAGTTTTCAAGCCTTGGGAGGGCACAAGTCAAGCCAGTGCAAGGATCATGTAAACAACAACACCCACAGCTCGGCAGATAACAGTGTAGTTAAAGATAACAATGATCCTGCTGAGCCTCGTCAAGATGAAGTGCACAGATGCCATGTTTGCAATAAAGTATTCGCAAGCTACCATGCTTTGGGAGGCCATGTATCAAGCCATTCGAAGAATAAGAACAACAATAATGTGGATCAAGATCAATCTAATTCTGCCGATACATCAACTGGTAGTGCTGAAAATAAGAATGAGCGTCAAAAGCTCTATCAAACAGTGCCTCACCAATGCAAAGTATGCGGCACGACTTTTCAGACAGGTCAGGCCTTGGGGGGTCATCAGAGGCTTCATTTTAAACGCCCAACTCAAGCTCCAGGTAAATCGAGTCAGCAGAGTAGTGCTCGTAAACACCTCGAAATTGATCTCAATGAGATTCCATCTATGGAGGATGAAGATGGAATATACGAGCCGAGTGTCATCTTGACATTAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

493

Amino Acids

54.92

Weight (kDa)

6.01

Isoelectric Point (pI)

55.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 33 - 55 5.6e-08 C2H2-type zinc finger
zf-C2H2_6 PF13912 251 - 274 6.4e-11 C2H2-type zinc finger
zf-C2H2_6 PF13912 306 - 328 2.2e-07 C2H2-type zinc finger
zf-C2H2_6 PF13912 361 - 386 6.5e-08 C2H2-type zinc finger
zf-C2H2_6 PF13912 423 - 445 2.5e-06 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g07960 FvH4_2g07970
rosa_chinensis RchiOBHm_Chr6g0262421
rosa_laevigata RLG00000014430
rosa_multiflora Rmu_sc0022687.1_g000001 Rmu_sc0022688.1_g000001
rosa_roxburghii Rroxscaffold_7G00205290
rosa_rugosa Rorug05G0597100
rosa_samantha Rh6AG117900 Rh6BG111900 Rh6CG109900 Rh6DG099500
rosa_wichuraiana Rw6G010230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 142, 796, 1129
AccI GTMKAC 1 cut(s) 918
AccII CGCG 2 cut(s) 171, 842
AciI CCGC 9 cut(s) 80, 169, 234, 539, 676, 840, 842, 922, 1284
AclWI GGATC 5 cut(s) 839, 852, 1002, 1049, 1188
AfaI GTAC 1 cut(s) 30
AfeI AGCGCT 1 cut(s) 261
AfiI CCNNNNNNNGG 6 cut(s) 142, 796, 969, 991, 1021, 1129
AgsI TTSAA 2 cut(s) 94, 959
AjnI CCWGG 1 cut(s) 1357
AloI GAACNNNNNNTCC 2 cut(s) 233, 265
AluBI AGCT 7 cut(s) 327, 763, 794, 1020, 1119, 1249, 1355
AluI AGCT 7 cut(s) 327, 763, 794, 1020, 1119, 1249, 1355
Alw21I GWGCWC 2 cut(s) 1086, 1387
Alw26I GTCTC 3 cut(s) 230, 285, 689
Alw44I GTGCAC 1 cut(s) 1082
AlwI GGATC 5 cut(s) 839, 852, 1002, 1049, 1188
Aor51HI AGCGCT 1 cut(s) 261
AoxI GGCC 3 cut(s) 133, 1135, 1308
ApaLI GTGCAC 1 cut(s) 1082
ApeKI GCWGC 3 cut(s) 321, 324, 924
AspLEI GCGC 1 cut(s) 262
AsuC2I CCSGG 1 cut(s) 501
AsuHPI GGTGA 2 cut(s) 526, 1259
AsuII TTCGAA 2 cut(s) 870, 1154
AxyI CCTNAGG 2 cut(s) 275, 303
BaeGI GKGCMC 2 cut(s) 975, 1086
BamHI GGATCC 1 cut(s) 844
BbsI GAAGAC 1 cut(s) 548
Bbv12I GWGCWC 2 cut(s) 1086, 1387
BbvCI CCTCAGC 1 cut(s) 570
BbvI GCAGC 3 cut(s) 333, 336, 911
BccI CCATC 5 cut(s) 53, 371, 696, 1429, 1433
BciT130I CCWGG 1 cut(s) 1359
BclI TGATCA 4 cut(s) 10, 346, 610, 850
BcnI CCSGG 1 cut(s) 501
BcoDI GTCTC 3 cut(s) 230, 285, 689
BfaI CTAG 3 cut(s) 189, 215, 591
BfoI RGCGCY 1 cut(s) 263
BisI GCNGC 6 cut(s) 235, 322, 325, 677, 925, 1285
BlpI GCTNAGC 1 cut(s) 1062
BlsI GCNGC 6 cut(s) 236, 323, 326, 678, 926, 1286
Bme1390I CCNGG 2 cut(s) 501, 1359
BmiI GGNNCC 1 cut(s) 846
BmrFI CCNGG 2 cut(s) 501, 1359
BmsI GCATC 3 cut(s) 60, 746, 1079
BpiI GAAGAC 1 cut(s) 548
BplI GAGNNNNNCTC 2 cut(s) 1369, 1401
BpmI CTGGAG 1 cut(s) 1341
Bpu10I CCTNAGC 1 cut(s) 570
Bpu1102I GCTNAGC 1 cut(s) 1062
Bpu14I TTCGAA 2 cut(s) 870, 1154
BpuEI CTTGAG 3 cut(s) 812, 934, 1335
BpuMI CCSGG 1 cut(s) 501
BsaBI GATNNNNATC 3 cut(s) 9, 849, 1185
BsaI GGTCTC 1 cut(s) 285
BsaJI CCNNGG 5 cut(s) 141, 252, 840, 963, 1311
BsaWI WCCGGW 1 cut(s) 126
BsaXI ACNNNNNCTCC 6 cut(s) 233, 263, 1125, 1155, 1339, 1369
Bsc4I CCNNNNNNNGG 6 cut(s) 142, 796, 969, 991, 1021, 1129
Bse118I RCCGGY 1 cut(s) 822
Bse1I ACTGG 7 cut(s) 207, 439, 516, 537, 905, 985, 1219
Bse21I CCTNAGG 2 cut(s) 275, 303
Bse3DI GCAATG 1 cut(s) 742
Bse8I GATNNNNATC 3 cut(s) 9, 849, 1185
BseBI CCWGG 1 cut(s) 1359
BseDI CCNNGG 5 cut(s) 141, 252, 840, 963, 1311
BseGI GGATG 5 cut(s) 452, 889, 895, 901, 1438
BseJI GATNNNNATC 3 cut(s) 9, 849, 1185
BseLI CCNNNNNNNGG 6 cut(s) 142, 796, 969, 991, 1021, 1129
BseMI GCAATG 1 cut(s) 742
BseMII CTCAG 5 cut(s) 38, 266, 317, 561, 1053
BseNI ACTGG 7 cut(s) 207, 439, 516, 537, 905, 985, 1219
BseRI GAGGAG 3 cut(s) 557, 599, 685
BseSI GKGCMC 2 cut(s) 975, 1086
BseXI GCAGC 3 cut(s) 333, 336, 911
BsgI GTGCAG 1 cut(s) 600
Bsh1236I CGCG 2 cut(s) 171, 842
BshFI GGCC 3 cut(s) 135, 1137, 1310
BsiHKAI GWGCWC 2 cut(s) 1086, 1387
BsiSI CCGG 4 cut(s) 83, 127, 501, 823
BslFI GGGAC 2 cut(s) 283, 483
BslI CCNNNNNNNGG 6 cut(s) 142, 796, 969, 991, 1021, 1129
BsmAI GTCTC 3 cut(s) 230, 285, 689
BsmFI GGGAC 2 cut(s) 283, 483
BsnI GGCC 3 cut(s) 135, 1137, 1310
Bso31I GGTCTC 1 cut(s) 285
Bsp119I TTCGAA 2 cut(s) 870, 1154
Bsp1286I GDGCHC 3 cut(s) 975, 1086, 1387
Bsp1720I GCTNAGC 1 cut(s) 1062
BspACI CCGC 9 cut(s) 80, 169, 234, 539, 676, 840, 842, 922, 1284
BspANI GGCC 3 cut(s) 135, 1137, 1310
BspCNI CTCAG 5 cut(s) 37, 267, 316, 562, 1054
BspFNI CGCG 2 cut(s) 171, 842
BspHI TCATGA 2 cut(s) 613, 853
BspLI GGNNCC 1 cut(s) 846
BspPI GGATC 5 cut(s) 839, 852, 1002, 1049, 1188
BspQI GCTCTTC 1 cut(s) 334
BspT104I TTCGAA 2 cut(s) 870, 1154
BspTNI GGTCTC 1 cut(s) 285
BsrDI GCAATG 1 cut(s) 742
BsrFI RCCGGY 1 cut(s) 822
BsrI ACTGG 7 cut(s) 207, 439, 516, 537, 905, 985, 1219
BssAI RCCGGY 1 cut(s) 822
BssECI CCNNGG 5 cut(s) 141, 252, 840, 963, 1311
BssNAI GTATAC 1 cut(s) 919
BssT1I CCWWGG 4 cut(s) 141, 252, 963, 1311
Bst1107I GTATAC 1 cut(s) 919
Bst2UI CCWGG 1 cut(s) 1359
Bst4CI ACNGT 4 cut(s) 340, 860, 1034, 1261
Bst6I CTCTTC 1 cut(s) 334
BstAPI GCANNNNNTGC 3 cut(s) 765, 933, 1281
BstBI TTCGAA 2 cut(s) 870, 1154
BstC8I GCNNGC 3 cut(s) 708, 761, 1117
BstDEI CTNAG 6 cut(s) 24, 66, 275, 303, 570, 1062
BstDSI CCRYGG 1 cut(s) 840
BstF5I GGATG 5 cut(s) 452, 889, 895, 901, 1438
BstFNI CGCG 2 cut(s) 171, 842
BstH2I RGCGCY 1 cut(s) 263
BstHHI GCGC 1 cut(s) 262
BstMAI GTCTC 3 cut(s) 230, 285, 689
BstMWI GCNNNNNNNGC 7 cut(s) 79, 587, 765, 933, 1098, 1246, 1281
BstNI CCWGG 1 cut(s) 1359
BstSCI CCNGG 2 cut(s) 499, 1357
BstSLI GKGCMC 2 cut(s) 975, 1086
BstUI CGCG 2 cut(s) 171, 842
BstV1I GCAGC 3 cut(s) 333, 336, 911
BstV2I GAAGAC 1 cut(s) 548
BstX2I RGATCY 1 cut(s) 844
BstYI RGATCY 1 cut(s) 844
BstZ17I GTATAC 1 cut(s) 919
Bsu36I CCTNAGG 2 cut(s) 275, 303
BsuRI GGCC 3 cut(s) 135, 1137, 1310
BtgI CCRYGG 1 cut(s) 840
BtsCI GGATG 5 cut(s) 452, 889, 895, 901, 1438
BtsIMutI CAGTG 7 cut(s) 214, 336, 432, 912, 992, 1039, 1266
Cac8I GCNNGC 3 cut(s) 708, 761, 1117
CciI TCATGA 2 cut(s) 613, 853
CfoI GCGC 1 cut(s) 262
Cfr10I RCCGGY 1 cut(s) 822
Cfr42I CCGCGG 1 cut(s) 843
CseI GACGC 1 cut(s) 1229
Csp6I GTAC 1 cut(s) 29
CviQI GTAC 1 cut(s) 29
DdeI CTNAG 6 cut(s) 24, 66, 275, 303, 570, 1062
DraI TTTAAA 1 cut(s) 1339
Eam1104I CTCTTC 1 cut(s) 334
EarI CTCTTC 1 cut(s) 334
EciI GGCGGA 1 cut(s) 69
Eco130I CCWWGG 4 cut(s) 141, 252, 963, 1311
Eco147I AGGCCT 1 cut(s) 1310
Eco31I GGTCTC 1 cut(s) 285
Eco47III AGCGCT 1 cut(s) 261
Eco81I CCTNAGG 2 cut(s) 275, 303
EcoRII CCWGG 1 cut(s) 1357
EcoT14I CCWWGG 4 cut(s) 141, 252, 963, 1311
ErhI CCWWGG 4 cut(s) 141, 252, 963, 1311
FaqI GGGAC 2 cut(s) 283, 483
FbaI TGATCA 4 cut(s) 10, 346, 610, 850
FblI GTMKAC 1 cut(s) 918
Fnu4HI GCNGC 6 cut(s) 235, 322, 325, 677, 925, 1285
FokI GGATG 5 cut(s) 439, 876, 882, 888, 1445
Fsp4HI GCNGC 6 cut(s) 235, 322, 325, 677, 925, 1285
FspBI CTAG 3 cut(s) 189, 215, 591
GlaI GCGC 1 cut(s) 261
GluI GCNGC 6 cut(s) 235, 322, 325, 677, 925, 1285
GsuI CTGGAG 1 cut(s) 1341
HaeII RGCGCY 1 cut(s) 263
HaeIII GGCC 3 cut(s) 135, 1137, 1310
HapII CCGG 4 cut(s) 83, 127, 501, 823
HgaI GACGC 1 cut(s) 1229
HhaI GCGC 1 cut(s) 262
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HindIII AAGCTT 2 cut(s) 761, 792
HinfI GANTC 9 cut(s) 76, 94, 123, 309, 386, 491, 496, 1369, 1417
HpaII CCGG 4 cut(s) 83, 127, 501, 823
HphI GGTGA 2 cut(s) 526, 1259
Hpy166II GTNNAC 5 cut(s) 884, 919, 1003, 1084, 1391
Hpy188I TCNGA 7 cut(s) 346, 355, 460, 475, 561, 1299, 1326
Hpy188III TCNNGA 7 cut(s) 614, 829, 848, 854, 1073, 1184, 1465
Hpy8I GTNNAC 5 cut(s) 884, 919, 1003, 1084, 1391
HpyCH4III ACNGT 4 cut(s) 340, 860, 1034, 1261
HpyF10VI GCNNNNNNNGC 7 cut(s) 79, 587, 765, 933, 1098, 1246, 1281
HpyF3I CTNAG 6 cut(s) 24, 66, 275, 303, 570, 1062
HspAI GCGC 1 cut(s) 260
Ksp22I TGATCA 4 cut(s) 10, 346, 610, 850
KspI CCGCGG 1 cut(s) 843
LguI GCTCTTC 1 cut(s) 334
LmnI GCTCC 1 cut(s) 1360
Lsp1109I GCAGC 3 cut(s) 333, 336, 911
LweI GCATC 3 cut(s) 60, 746, 1079
MaeI CTAG 3 cut(s) 189, 215, 591
MaeIII GTNAC 5 cut(s) 149, 209, 514, 785, 803
MboII GAAGA 6 cut(s) 26, 321, 324, 548, 1168, 1448
MfeI CAATTG 1 cut(s) 730
MflI RGATCY 1 cut(s) 844
MhlI GDGCHC 3 cut(s) 975, 1086, 1387
MluCI AATT 4 cut(s) 730, 931, 1195, 1401
MlyI GAGTC 4 cut(s) 70, 318, 505, 1378
MseI TTAA 4 cut(s) 912, 1041, 1338, 1472
MslI CAYNNNNRTG 4 cut(s) 68, 354, 618, 624
MspA1I CMGCKG 2 cut(s) 842, 924
MspI CCGG 4 cut(s) 83, 127, 501, 823
MspR9I CCNGG 2 cut(s) 501, 1359
MunI CAATTG 1 cut(s) 730
MvaI CCWGG 1 cut(s) 1359
MvnI CGCG 2 cut(s) 171, 842
MwoI GCNNNNNNNGC 7 cut(s) 79, 587, 765, 933, 1098, 1246, 1281
NciI CCSGG 1 cut(s) 501
NlaIV GGNNCC 1 cut(s) 846
NmeAIII GCCGAG 2 cut(s) 1001, 1479
NmuCI GTSAC 4 cut(s) 149, 209, 514, 803
NspV TTCGAA 2 cut(s) 870, 1154
PagI TCATGA 2 cut(s) 613, 853
PceI AGGCCT 1 cut(s) 1310
PciSI GCTCTTC 1 cut(s) 334
PfeI GAWTC 5 cut(s) 94, 123, 386, 491, 1417
PflMI CCANNNNNTGG 3 cut(s) 142, 796, 1129
PfoI TCCNGGA 1 cut(s) 499
PkrI GCNGC 6 cut(s) 236, 323, 326, 678, 926, 1286
PleI GAGTC 4 cut(s) 70, 317, 504, 1377
PpsI GAGTC 4 cut(s) 70, 317, 504, 1377
Psp6I CCWGG 1 cut(s) 1357
PspGI CCWGG 1 cut(s) 1357
PspN4I GGNNCC 1 cut(s) 846
PsuI RGATCY 1 cut(s) 844
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
RseI CAYNNNNRTG 4 cut(s) 68, 354, 618, 624
SacII CCGCGG 1 cut(s) 843
SapI GCTCTTC 1 cut(s) 334
SaqAI TTAA 4 cut(s) 912, 1041, 1338, 1472
SatI GCNGC 6 cut(s) 235, 322, 325, 677, 925, 1285
SchI GAGTC 4 cut(s) 70, 318, 505, 1378
ScrFI CCNGG 2 cut(s) 501, 1359
SduI GDGCHC 3 cut(s) 975, 1086, 1387
SfaNI GCATC 3 cut(s) 60, 746, 1079
Sfr303I CCGCGG 1 cut(s) 843
SfuI TTCGAA 2 cut(s) 870, 1154
SgrBI CCGCGG 1 cut(s) 843
SmiMI CAYNNNNRTG 4 cut(s) 68, 354, 618, 624
SmlI CTYRAG 3 cut(s) 827, 949, 1350
SmoI CTYRAG 3 cut(s) 827, 949, 1350
Sse9I AATT 4 cut(s) 730, 931, 1195, 1401
SseBI AGGCCT 1 cut(s) 1310
SsiI CCGC 9 cut(s) 80, 169, 234, 539, 676, 840, 842, 922, 1284
SspMI CTAG 3 cut(s) 189, 215, 591
StuI AGGCCT 1 cut(s) 1310
StyD4I CCNGG 2 cut(s) 499, 1357
StyI CCWWGG 4 cut(s) 141, 252, 963, 1311
TaaI ACNGT 4 cut(s) 340, 860, 1034, 1261
TasI AATT 4 cut(s) 730, 931, 1195, 1401
TauI GCSGC 3 cut(s) 237, 679, 1287
TfiI GAWTC 5 cut(s) 94, 123, 386, 491, 1417
Tru1I TTAA 4 cut(s) 912, 1041, 1338, 1472
Tru9I TTAA 4 cut(s) 912, 1041, 1338, 1472
TscAI CASTG 7 cut(s) 214, 343, 439, 912, 992, 1039, 1266
TseFI GTSAC 4 cut(s) 149, 209, 514, 803
TseI GCWGC 3 cut(s) 321, 324, 924
Tsp45I GTSAC 4 cut(s) 149, 209, 514, 803
TspDTI ATGAA 6 cut(s) 254, 492, 702, 1092, 1322, 1449
TspRI CASTG 7 cut(s) 214, 343, 439, 912, 992, 1039, 1266
Van91I CCANNNNNTGG 3 cut(s) 142, 796, 1129
VneI GTGCAC 1 cut(s) 1082
XmiI GTMKAC 1 cut(s) 918
XspI CTAG 3 cut(s) 189, 215, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.