Rorug05G0597100

C2H2-type zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0017239
Physical Location & Seq
Reverse (-)
79475168 .. 79477611
2444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0597100.1

Sequence Viewer

Length: 1137 bp
ATGGAGGAAGCAATGGCAGCTAGGTACTGGTGCCACATGTGTTCTGAAATGGTGAACCCCGTCATGGGAGTTGAAATGAAATGCCCATTATGCCAGAGCGGATTTATTGAGGAAATGGATGGCACCACAAGGGACAATCATGAACCCGACTCTGAATTTGGACCCGATCGACCTCTCTCCCTCTGGGCTCCAATCTTGATGGGGATGATGAACAACAATCCCCGTAGACGACGGAGATTGAGACGACAAGAGTTCGATGAGGATGATGATGAGGATAATGAGAATGATGATGCCCATGGGGGAGACACTGAACTGGACAGAGAACTTGAATCAATCATCCGAAGGAGGAGGAGAAGCTCATCTTCCATTCTTCAACTGCTTCGGGGCATTCGAGCAGCTGGCTTGGCATCTGAATCAGAGAATTCTGAGAGTGATAGGGACAGGGACAGGGATAGAGATAGGGACACAGAAAGGGAACGCCTAATTCTTATCAATCCTTTCAATCAGACCATCATTCTTCATGGTTCTTATGATTCAAGTCAGGGTCAAAACAACAATCACACCGCTATTGGTTCATTAGGTGATTATTTTATCGGGCCTGGTCTGGACTTATTGCTGCAACATTTGGCAGAGAATGATCCTAATAGATATGGAACTCCTCCGGCACAAAAGGAGGCAGTGGAAGCTCTGCCCACTGTGACAATTAAGGAGAATTTGCAGTGTTCTGTGTGCTTGGATGATTTTAAGATCGGTGTTGAAGCAAAAGAAATGCCATGTAAGCATAAATTTCATGGTGAGTGTATTCTGCCATGGCTGGAGCTTCATAGTTCCTGCCCAGTTTGCAGGTTTCAGTTGCCTGCTGATGAAGCCAAACATGATTCCAATAATTCTAGAAACAGCAGTAACCAGAGGGATAGTGAGAACACTGGCGGTGCTGGGGAAGAGGGAGATGAGGATGGGGATGGTATTGCGATTGGGAGAAATGGAAGTGGCAGAAGGTTTCAAATTCCGTGGCCTTTCAATCTGTTTTCATCGACAGAATCTCAATCTAGTGGCAGTGGGGGTAATTCTTCCTCATCAGCAAATGCAACTGGAAGCGGGAGTGGGAGTGGTTGGTCTCAAACAGATGACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

378

Amino Acids

42.04

Weight (kDa)

4.73

Isoelectric Point (pI)

62.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_19 PF14369 8 - 39 3.1e-11 zinc-ribbon
zf-RING_2 PF13639 240 - 282 9e-14 Ring finger domain
zf-C3HC4_2 PF13923 240 - 281 1.9e-10 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 240 - 268 6.1e-09 RING-like zinc finger
zf-C3HC4 PF00097 241 - 281 2e-07 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 255 - 282 1.4e-06 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g07960 FvH4_2g07970
rosa_chinensis RchiOBHm_Chr6g0262421
rosa_laevigata RLG00000014430
rosa_multiflora Rmu_sc0022687.1_g000001 Rmu_sc0022688.1_g000001
rosa_roxburghii Rroxscaffold_7G00205290
rosa_rugosa Rorug05G0597100
rosa_samantha Rh6AG117900 Rh6BG111900 Rh6CG109900 Rh6DG099500
rosa_wichuraiana Rw6G010230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 834
AccB1I GGYRCC 2 cut(s) 30, 122
AccBSI CCGCTC 1 cut(s) 99
AccI GTMKAC 1 cut(s) 226
AciI CCGC 4 cut(s) 99, 564, 930, 1098
AclWI GGATC 1 cut(s) 632
AcsI RAATTY 5 cut(s) 155, 421, 712, 785, 1005
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 2 cut(s) 64, 65
AflIII ACRYGT 1 cut(s) 36
AgsI TTSAA 8 cut(s) 74, 329, 374, 502, 537, 758, 1004, 1021
AjnI CCWGG 1 cut(s) 598
AluBI AGCT 5 cut(s) 20, 357, 398, 686, 820
AluI AGCT 5 cut(s) 20, 357, 398, 686, 820
Alw26I GTCTC 3 cut(s) 235, 297, 1122
AlwI GGATC 1 cut(s) 632
AoxI GGCC 2 cut(s) 596, 1013
ApeKI GCWGC 3 cut(s) 17, 395, 616
ApoI RAATTY 5 cut(s) 155, 421, 712, 785, 1005
ArsI GACNNNNNNTTYG 2 cut(s) 140, 172
AspS9I GGNCC 2 cut(s) 161, 596
AsuHPI GGTGA 3 cut(s) 64, 593, 806
AvaII GGWCC 1 cut(s) 161
BanI GGYRCC 2 cut(s) 30, 122
BanII GRGCYC 1 cut(s) 190
BbvI GCAGC 3 cut(s) 29, 407, 603
BccI CCATC 5 cut(s) 113, 193, 518, 950, 956
BciT130I CCWGG 1 cut(s) 600
BcoDI GTCTC 3 cut(s) 235, 297, 1122
BfaI CTAG 3 cut(s) 21, 891, 1050
BfuAI ACCTGC 1 cut(s) 834
BisI GCNGC 3 cut(s) 18, 396, 617
BlsI GCNGC 3 cut(s) 19, 397, 618
Bme1390I CCNGG 1 cut(s) 600
Bme18I GGWCC 1 cut(s) 161
BmgT120I GGNCC 2 cut(s) 161, 596
BmiI GGNNCC 4 cut(s) 32, 124, 163, 189
BmrFI CCNGG 1 cut(s) 600
BmrI ACTGGG 1 cut(s) 830
BmsI GCATC 2 cut(s) 280, 416
BmuI ACTGGG 1 cut(s) 830
BpmI CTGGAG 1 cut(s) 836
BsaI GGTCTC 1 cut(s) 1122
BsaJI CCNNGG 3 cut(s) 295, 809, 1010
BsaXI ACNNNNNCTCC 2 cut(s) 1093, 1123
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 65
Bse1I ACTGG 5 cut(s) 32, 318, 836, 931, 1096
Bse3DI GCAATG 1 cut(s) 18
BseBI CCWGG 1 cut(s) 600
BseDI CCNNGG 3 cut(s) 295, 809, 1010
BseGI GGATG 7 cut(s) 124, 210, 268, 336, 742, 961, 967
BseLI CCNNNNNNNGG 2 cut(s) 64, 65
BseMI GCAATG 1 cut(s) 18
BseMII CTCAG 1 cut(s) 417
BseNI ACTGG 5 cut(s) 32, 318, 836, 931, 1096
BseRI GAGGAG 3 cut(s) 361, 364, 648
BseXI GCAGC 3 cut(s) 29, 407, 603
BseYI CCCAGC 1 cut(s) 935
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 2 cut(s) 598, 1015
BshNI GGYRCC 2 cut(s) 30, 122
BsiEI CGRYCG 1 cut(s) 169
BsiSI CCGG 1 cut(s) 662
BslFI GGGAC 4 cut(s) 146, 452, 458, 476
BslI CCNNNNNNNGG 2 cut(s) 64, 65
BsmAI GTCTC 3 cut(s) 235, 297, 1122
BsmBI CGTCTC 1 cut(s) 235
BsmFI GGGAC 4 cut(s) 146, 452, 458, 476
BsmI GAATGC 1 cut(s) 387
BsnI GGCC 2 cut(s) 598, 1015
Bso31I GGTCTC 1 cut(s) 1122
Bsp1286I GDGCHC 1 cut(s) 190
Bsp143I GATC 3 cut(s) 166, 637, 747
Bsp19I CCATGG 2 cut(s) 295, 809
BspACI CCGC 4 cut(s) 99, 564, 930, 1098
BspANI GGCC 2 cut(s) 598, 1015
BspCNI CTCAG 1 cut(s) 418
BspHI TCATGA 1 cut(s) 139
BspLI GGNNCC 4 cut(s) 32, 124, 163, 189
BspMI ACCTGC 1 cut(s) 834
BspPI GGATC 1 cut(s) 632
BspT107I GGYRCC 2 cut(s) 30, 122
BspTNI GGTCTC 1 cut(s) 1122
BsrBI CCGCTC 1 cut(s) 99
BsrDI GCAATG 1 cut(s) 18
BsrI ACTGG 5 cut(s) 32, 318, 836, 931, 1096
BssECI CCNNGG 3 cut(s) 295, 809, 1010
BssMI GATC 3 cut(s) 166, 637, 747
BssT1I CCWWGG 2 cut(s) 295, 809
Bst2UI CCWGG 1 cut(s) 600
Bst4CI ACNGT 1 cut(s) 697
Bst6I CTCTTC 1 cut(s) 936
BstC8I GCNNGC 2 cut(s) 400, 858
BstDEI CTNAG 1 cut(s) 426
BstDSI CCRYGG 3 cut(s) 295, 809, 1010
BstF5I GGATG 7 cut(s) 124, 210, 268, 336, 742, 961, 967
BstKTI GATC 3 cut(s) 169, 640, 750
BstMAI GTCTC 3 cut(s) 235, 297, 1122
BstMBI GATC 3 cut(s) 166, 637, 747
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 7 cut(s) 17, 90, 404, 683, 778, 840, 866
BstNI CCWGG 1 cut(s) 600
BstNSI RCATGY 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 598
BstV1I GCAGC 3 cut(s) 29, 407, 603
BsuRI GGCC 2 cut(s) 598, 1015
BtgI CCRYGG 3 cut(s) 295, 809, 1010
BtsCI GGATG 7 cut(s) 124, 210, 268, 336, 742, 961, 967
BtsI GCAGTG 3 cut(s) 684, 725, 1063
BtsIMutI CAGTG 6 cut(s) 306, 684, 693, 725, 924, 1063
BveI ACCTGC 1 cut(s) 834
Cac8I GCNNGC 2 cut(s) 400, 858
CciI TCATGA 1 cut(s) 139
Cfr13I GGNCC 2 cut(s) 161, 596
Csp6I GTAC 1 cut(s) 25
CspCI CAANNNNNGTGG 2 cut(s) 992, 1027
CviAII CATG 9 cut(s) 37, 64, 140, 296, 521, 774, 791, 810, 875
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 1 cut(s) 426
DpnI GATC 3 cut(s) 168, 639, 749
DpnII GATC 3 cut(s) 166, 637, 747
Eam1104I CTCTTC 1 cut(s) 936
EarI CTCTTC 1 cut(s) 936
Eco130I CCWWGG 2 cut(s) 295, 809
Eco24I GRGCYC 1 cut(s) 190
Eco31I GGTCTC 1 cut(s) 1122
Eco47I GGWCC 1 cut(s) 161
EcoRI GAATTC 1 cut(s) 421
EcoRII CCWGG 1 cut(s) 598
EcoT14I CCWWGG 2 cut(s) 295, 809
EcoT38I GRGCYC 1 cut(s) 190
ErhI CCWWGG 2 cut(s) 295, 809
Esp3I CGTCTC 1 cut(s) 235
FaeI CATG 9 cut(s) 40, 67, 143, 299, 524, 777, 794, 813, 878
FalI AAGNNNNNCTT 2 cut(s) 346, 378
FaqI GGGAC 4 cut(s) 146, 452, 458, 476
FatI CATG 9 cut(s) 36, 63, 139, 295, 520, 773, 790, 809, 874
FauI CCCGC 1 cut(s) 1091
FblI GTMKAC 1 cut(s) 226
Fnu4HI GCNGC 3 cut(s) 18, 396, 617
FokI GGATG 7 cut(s) 131, 217, 275, 323, 749, 968, 974
FriOI GRGCYC 1 cut(s) 190
Fsp4HI GCNGC 3 cut(s) 18, 396, 617
FspBI CTAG 3 cut(s) 21, 891, 1050
GluI GCNGC 3 cut(s) 18, 396, 617
GsaI CCCAGC 1 cut(s) 939
GsuI CTGGAG 1 cut(s) 836
HaeIII GGCC 2 cut(s) 598, 1015
HapII CCGG 1 cut(s) 662
Hin1II CATG 9 cut(s) 40, 67, 143, 299, 524, 777, 794, 813, 878
HinfI GANTC 6 cut(s) 149, 329, 413, 533, 878, 1040
HpaII CCGG 1 cut(s) 662
HphI GGTGA 3 cut(s) 64, 593, 806
Hpy166II GTNNAC 2 cut(s) 55, 227
Hpy188I TCNGA 7 cut(s) 46, 154, 341, 412, 418, 427, 507
Hpy188III TCNNGA 4 cut(s) 140, 196, 605, 891
Hpy8I GTNNAC 2 cut(s) 55, 227
Hpy99I CGWCG 1 cut(s) 234
HpyAV CCTTC 2 cut(s) 336, 990
HpyCH4III ACNGT 1 cut(s) 697
HpyCH4V TGCA 4 cut(s) 619, 718, 843, 1088
HpyF10VI GCNNNNNNNGC 7 cut(s) 17, 90, 404, 683, 778, 840, 866
HpyF3I CTNAG 1 cut(s) 426
Hsp92II CATG 9 cut(s) 40, 67, 143, 299, 524, 777, 794, 813, 878
Kzo9I GATC 3 cut(s) 166, 637, 747
LmnI GCTCC 2 cut(s) 193, 817
Lsp1109I GCAGC 3 cut(s) 29, 407, 603
LweI GCATC 2 cut(s) 280, 416
MaeI CTAG 3 cut(s) 21, 891, 1050
MaeIII GTNAC 2 cut(s) 697, 902
MalI GATC 3 cut(s) 168, 639, 749
MbiI CCGCTC 1 cut(s) 99
MboI GATC 3 cut(s) 166, 637, 747
MboII GAAGA 5 cut(s) 354, 362, 509, 953, 1062
MfeI CAATTG 1 cut(s) 1132
MhlI GDGCHC 1 cut(s) 190
MlyI GAGTC 1 cut(s) 143
MseI TTAA 2 cut(s) 705, 744
MspA1I CMGCKG 1 cut(s) 398
MspI CCGG 1 cut(s) 662
MspR9I CCNGG 1 cut(s) 600
MunI CAATTG 1 cut(s) 1132
Mva1269I GAATGC 1 cut(s) 387
MvaI CCWGG 1 cut(s) 600
MwoI GCNNNNNNNGC 7 cut(s) 17, 90, 404, 683, 778, 840, 866
NcoI CCATGG 2 cut(s) 295, 809
NdeII GATC 3 cut(s) 166, 637, 747
NlaIII CATG 9 cut(s) 40, 67, 143, 299, 524, 777, 794, 813, 878
NlaIV GGNNCC 4 cut(s) 32, 124, 163, 189
NmuCI GTSAC 1 cut(s) 697
NspI RCATGY 1 cut(s) 40
PagI TCATGA 1 cut(s) 139
PciI ACATGT 1 cut(s) 36
PcsI WCGNNNNNNNCGW 1 cut(s) 388
PctI GAATGC 1 cut(s) 387
PfeI GAWTC 5 cut(s) 329, 413, 533, 878, 1040
PkrI GCNGC 3 cut(s) 19, 397, 618
Ple19I CGATCG 1 cut(s) 169
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
PscI ACATGT 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 598
PspFI CCCAGC 1 cut(s) 935
PspGI CCWGG 1 cut(s) 598
PspN4I GGNNCC 4 cut(s) 32, 124, 163, 189
PspPI GGNCC 2 cut(s) 161, 596
PvuI CGATCG 1 cut(s) 169
PvuII CAGCTG 1 cut(s) 398
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
SaqAI TTAA 2 cut(s) 705, 744
SatI GCNGC 3 cut(s) 18, 396, 617
Sau3AI GATC 3 cut(s) 166, 637, 747
Sau96I GGNCC 2 cut(s) 161, 596
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 1 cut(s) 600
SduI GDGCHC 1 cut(s) 190
SfaNI GCATC 2 cut(s) 280, 416
SinI GGWCC 1 cut(s) 161
SsiI CCGC 4 cut(s) 99, 564, 930, 1098
SspMI CTAG 3 cut(s) 21, 891, 1050
StyD4I CCNGG 1 cut(s) 598
StyI CCWWGG 2 cut(s) 295, 809
TaaI ACNGT 1 cut(s) 697
TaqI TCGA 4 cut(s) 169, 255, 391, 1034
TfiI GAWTC 5 cut(s) 329, 413, 533, 878, 1040
Tru1I TTAA 2 cut(s) 705, 744
Tru9I TTAA 2 cut(s) 705, 744
TscAI CASTG 6 cut(s) 313, 684, 700, 725, 931, 1063
TseFI GTSAC 1 cut(s) 697
TseI GCWGC 3 cut(s) 17, 395, 616
Tsp45I GTSAC 1 cut(s) 697
TspDTI ATGAA 9 cut(s) 92, 156, 224, 509, 564, 779, 812, 879, 1020
TspGWI ACGGA 2 cut(s) 247, 999
TspRI CASTG 6 cut(s) 313, 684, 700, 725, 931, 1063
VpaK11BI GGWCC 1 cut(s) 161
XapI RAATTY 5 cut(s) 155, 421, 712, 785, 1005
XbaI TCTAGA 1 cut(s) 890
XceI RCATGY 1 cut(s) 40
XmiI GTMKAC 1 cut(s) 226
XspI CTAG 3 cut(s) 21, 891, 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.