FvH4_2g07970

C2H2-type zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0017239
Physical Location & Seq
Forward (+)
6864001 .. 6865131
1131 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g07970.t1

Sequence Viewer

Length: 1131 bp
ATGATAAATCAGCCTGAGGCTTTAGTTGCTCAGTTCAGTTACACCTATGATGAGCAACAGTCTAATGCAGCTGGTACGTCTCGAATTGGGTGTTATTCGGATTATCTGGCCAACAGTTTACCTAGAAGTAGAAGTATCTCATCATATGACTCCGAAAAAACTTATACTGATCCCATGTTGTATTCGAGTAAAGCGGTAGAGGAGTTGAGTGGTCTAATGATGTTAGCTGATGTGTGTGAGGAGGAGCAGCAGGACAGCAACTCCATTAATAGTTATCAGCATGTTGATGGTAATGTGATCAAAGATGTTGCGGGCACATTCAAGAGGAGGAAGTTGCTGTTGGATGAGGCTGATAAAAGATGGTCTACTGGTGATCGTTATGGTTACAACAACAAAGACGACATTGACTGTGAATTTATATGCAAGCTTTGTGATAAAACATTCACAAGTTACCAAGCTTTGGGAGGTCACATGTCAAGCCATAACCGTCTCAAGATCAACTTCGCGGATCATGATCATGACCGATTTAGCTCACAGTATAACAATGAACAACGTCCTCATCCTCATCCAGTGGTTAATGTATACCGCTGCAGTAATTGCGATAGAACATTCTCAAGTTTCCAAGCCTTAGGAGGGCACAGGTCAAGCCAGTGCAAGGATGTGAACAACAACAACAACAACACAAACAACTCGGCCGATAACAATGATCCTGCTGAGCCTCGTCAAGATGAAGTACACAGATGCCATGTTTGCAAAAAAGCATTCACAAGCTATCGTGCTTTGGGAGGACATGTATCAAGCCATTCGAAGAACAAGAACAACAATAATGTCGATCAAGATCAATCTAATTCCGCAGATATGTCAACTAGTAGAGCTGAAGATAAGAATGAACGTCAAAAGCTCTATCAAACAGTGCCTCACCAATGCAAAGTATGCAGCAAGACTTTTCCAACAGGTCGGGCCTTGGGGGGTCATCAGAGGCTTCATTATAAGGGCCCAACTCAAGCTCTGGGTAAATCGAGTCAGCAGAGTAGTGCTCATAAACACCTCGGAATTAACCTCAATGAGATTCCATCTATGGAGGATGAAGATGGAACATATGAGCCGAGTGTCATCTTGAAATTAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

377

Amino Acids

42.39

Weight (kDa)

6.38

Isoelectric Point (pI)

46.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 139 - 162 2.5e-10 C2H2-type zinc finger
zf-C2H2_6 PF13912 194 - 216 1.1e-07 C2H2-type zinc finger
zf-C2H2_6 PF13912 245 - 270 2e-07 C2H2-type zinc finger
zf-C2H2_6 PF13912 307 - 331 6.5e-07 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g07960 FvH4_2g07970
rosa_chinensis RchiOBHm_Chr6g0262421
rosa_laevigata RLG00000014430
rosa_multiflora Rmu_sc0022687.1_g000001 Rmu_sc0022688.1_g000001
rosa_roxburghii Rroxscaffold_7G00205290
rosa_rugosa Rorug05G0597100
rosa_samantha Rh6AG117900 Rh6BG111900 Rh6CG109900 Rh6DG099500
rosa_wichuraiana Rw6G010230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 990
AccB7I CCANNNNNTGG 1 cut(s) 460
AccI GTMKAC 2 cut(s) 365, 582
AccII CGCG 1 cut(s) 506
AciI CCGC 5 cut(s) 194, 311, 506, 586, 852
AclWI GGATC 3 cut(s) 164, 516, 701
AcoI YGGCCR 2 cut(s) 108, 693
AcsI RAATTY 1 cut(s) 413
AcuI CTGAAG 1 cut(s) 897
AfaI GTAC 2 cut(s) 76, 735
AfiI CCNNNNNNNGG 3 cut(s) 460, 633, 655
AflIII ACRYGT 2 cut(s) 471, 790
AgsI TTSAA 2 cut(s) 322, 1120
AhlI ACTAGT 1 cut(s) 866
AjuI GAANNNNNNNTTGG 2 cut(s) 323, 355
AluBI AGCT 9 cut(s) 71, 227, 427, 458, 531, 771, 875, 901, 1007
AluI AGCT 9 cut(s) 71, 227, 427, 458, 531, 771, 875, 901, 1007
Alw21I GWGCWC 1 cut(s) 1039
Alw26I GTCTC 2 cut(s) 84, 494
AlwI GGATC 3 cut(s) 164, 516, 701
AoxI GGCC 4 cut(s) 108, 693, 960, 994
ApaI GGGCCC 1 cut(s) 998
ApeKI GCWGC 4 cut(s) 68, 247, 588, 936
ApoI RAATTY 1 cut(s) 413
AseI ATTAAT 1 cut(s) 267
AspS9I GGNCC 3 cut(s) 960, 994, 995
AsuHPI GGTGA 2 cut(s) 383, 911
AsuII TTCGAA 1 cut(s) 806
AxyI CCTNAGG 2 cut(s) 15, 628
BaeGI GKGCMC 3 cut(s) 317, 639, 998
BalI TGGCCA 1 cut(s) 110
BanII GRGCYC 1 cut(s) 998
Bbv12I GWGCWC 1 cut(s) 1039
BbvI GCAGC 4 cut(s) 80, 259, 575, 948
BccI CCATC 4 cut(s) 281, 354, 1081, 1085
BclI TGATCA 2 cut(s) 297, 514
BcoDI GTCTC 2 cut(s) 84, 494
BcuI ACTAGT 1 cut(s) 866
BfaI CTAG 2 cut(s) 123, 867
BfmI CTRYAG 1 cut(s) 589
BisI GCNGC 4 cut(s) 69, 248, 589, 937
BlpI GCTNAGC 1 cut(s) 714
BlsI GCNGC 4 cut(s) 70, 249, 590, 938
BmgT120I GGNCC 3 cut(s) 960, 994, 995
BmiI GGNNCC 1 cut(s) 996
BmsI GCATC 1 cut(s) 731
BplI GAGNNNNNCTC 2 cut(s) 1021, 1053
Bpu1102I GCTNAGC 1 cut(s) 714
Bpu14I TTCGAA 1 cut(s) 806
BpuEI CTTGAG 3 cut(s) 476, 598, 987
BsaBI GATNNNNATC 2 cut(s) 513, 837
BsaJI CCNNGG 2 cut(s) 963, 1048
BsaXI ACNNNNNCTCC 4 cut(s) 245, 275, 777, 807
Bsc4I CCNNNNNNNGG 3 cut(s) 460, 633, 655
Bse1I ACTGG 3 cut(s) 373, 569, 649
Bse21I CCTNAGG 2 cut(s) 15, 628
Bse8I GATNNNNATC 2 cut(s) 513, 837
BseDI CCNNGG 2 cut(s) 963, 1048
BseGI GGATG 5 cut(s) 349, 559, 565, 664, 1090
BseJI GATNNNNATC 2 cut(s) 513, 837
BseLI CCNNNNNNNGG 3 cut(s) 460, 633, 655
BseMII CTCAG 3 cut(s) 6, 44, 705
BseNI ACTGG 3 cut(s) 373, 569, 649
BseRI GAGGAG 4 cut(s) 215, 254, 257, 340
BseSI GKGCMC 3 cut(s) 317, 639, 998
BseX3I CGGCCG 1 cut(s) 693
BseXI GCAGC 4 cut(s) 80, 259, 575, 948
Bsh1236I CGCG 1 cut(s) 506
Bsh1285I CGRYCG 1 cut(s) 696
BshFI GGCC 4 cut(s) 110, 695, 962, 996
BsiEI CGRYCG 1 cut(s) 696
BsiHKAI GWGCWC 1 cut(s) 1039
BslI CCNNNNNNNGG 3 cut(s) 460, 633, 655
BsmAI GTCTC 2 cut(s) 84, 494
BsmBI CGTCTC 2 cut(s) 84, 494
BsmI GAATGC 1 cut(s) 761
BsnI GGCC 4 cut(s) 110, 695, 962, 996
Bsp119I TTCGAA 1 cut(s) 806
Bsp120I GGGCCC 1 cut(s) 994
Bsp1286I GDGCHC 4 cut(s) 317, 639, 998, 1039
Bsp143I GATC 9 cut(s) 169, 297, 373, 495, 508, 514, 706, 832, 838
Bsp1720I GCTNAGC 1 cut(s) 714
BspACI CCGC 5 cut(s) 194, 311, 506, 586, 852
BspANI GGCC 4 cut(s) 110, 695, 962, 996
BspCNI CTCAG 3 cut(s) 7, 43, 706
BspFNI CGCG 1 cut(s) 506
BspHI TCATGA 2 cut(s) 511, 517
BspLI GGNNCC 1 cut(s) 996
BspMAI CTGCAG 1 cut(s) 593
BspPI GGATC 3 cut(s) 164, 516, 701
BspT104I TTCGAA 1 cut(s) 806
BsrI ACTGG 3 cut(s) 373, 569, 649
BssECI CCNNGG 2 cut(s) 963, 1048
BssMI GATC 9 cut(s) 169, 297, 373, 495, 508, 514, 706, 832, 838
BssNAI GTATAC 1 cut(s) 583
BssT1I CCWWGG 1 cut(s) 963
Bst1107I GTATAC 1 cut(s) 583
Bst4CI ACNGT 6 cut(s) 60, 116, 410, 488, 537, 913
BstAPI GCANNNNNTGC 2 cut(s) 597, 933
BstBI TTCGAA 1 cut(s) 806
BstC8I GCNNGC 2 cut(s) 313, 425
BstDEI CTNAG 4 cut(s) 15, 30, 628, 714
BstF5I GGATG 5 cut(s) 349, 559, 565, 664, 1090
BstFNI CGCG 1 cut(s) 506
BstKTI GATC 9 cut(s) 172, 300, 376, 498, 511, 517, 709, 835, 841
BstMAI GTCTC 2 cut(s) 84, 494
BstMBI GATC 9 cut(s) 169, 297, 373, 495, 508, 514, 706, 832, 838
BstMCI CGRYCG 1 cut(s) 696
BstMWI GCNNNNNNNGC 4 cut(s) 26, 597, 750, 933
BstNSI RCATGY 3 cut(s) 284, 475, 794
BstSFI CTRYAG 1 cut(s) 589
BstSLI GKGCMC 3 cut(s) 317, 639, 998
BstUI CGCG 1 cut(s) 506
BstV1I GCAGC 4 cut(s) 80, 259, 575, 948
BstZ17I GTATAC 1 cut(s) 583
BstZI CGGCCG 1 cut(s) 693
Bsu36I CCTNAGG 2 cut(s) 15, 628
BsuRI GGCC 4 cut(s) 110, 695, 962, 996
BtsCI GGATG 5 cut(s) 349, 559, 565, 664, 1090
BtsIMutI CAGTG 3 cut(s) 576, 656, 918
Cac8I GCNNGC 2 cut(s) 313, 425
CciI TCATGA 2 cut(s) 511, 517
Cfr13I GGNCC 3 cut(s) 960, 994, 995
Csp6I GTAC 2 cut(s) 75, 734
CviAII CATG 7 cut(s) 175, 281, 472, 512, 518, 746, 791
CviQI GTAC 2 cut(s) 75, 734
DdeI CTNAG 4 cut(s) 15, 30, 628, 714
DpnI GATC 9 cut(s) 171, 299, 375, 497, 510, 516, 708, 834, 840
DpnII GATC 9 cut(s) 169, 297, 373, 495, 508, 514, 706, 832, 838
EaeI YGGCCR 2 cut(s) 108, 693
EagI CGGCCG 1 cut(s) 693
EclXI CGGCCG 1 cut(s) 693
Eco130I CCWWGG 1 cut(s) 963
Eco24I GRGCYC 1 cut(s) 998
Eco52I CGGCCG 1 cut(s) 693
Eco57I CTGAAG 1 cut(s) 897
Eco81I CCTNAGG 2 cut(s) 15, 628
EcoO109I RGGNCCY 1 cut(s) 994
EcoT14I CCWWGG 1 cut(s) 963
EcoT38I GRGCYC 1 cut(s) 998
ErhI CCWWGG 1 cut(s) 963
Esp3I CGTCTC 2 cut(s) 84, 494
FaeI CATG 7 cut(s) 178, 284, 475, 515, 521, 749, 794
FalI AAGNNNNNCTT 2 cut(s) 485, 517
FatI CATG 7 cut(s) 174, 280, 471, 511, 517, 745, 790
FauI CCCGC 1 cut(s) 304
FauNDI CATATG 2 cut(s) 145, 1099
FbaI TGATCA 2 cut(s) 297, 514
FblI GTMKAC 2 cut(s) 365, 582
Fnu4HI GCNGC 4 cut(s) 69, 248, 589, 937
FokI GGATG 5 cut(s) 356, 546, 552, 671, 1097
FriOI GRGCYC 1 cut(s) 998
Fsp4HI GCNGC 4 cut(s) 69, 248, 589, 937
FspBI CTAG 2 cut(s) 123, 867
GluI GCNGC 4 cut(s) 69, 248, 589, 937
HaeIII GGCC 4 cut(s) 110, 695, 962, 996
Hin1II CATG 7 cut(s) 178, 284, 475, 515, 521, 749, 794
HincII GTYRAC 1 cut(s) 864
HindII GTYRAC 1 cut(s) 864
HindIII AAGCTT 2 cut(s) 425, 456
HinfI GANTC 3 cut(s) 149, 1021, 1069
HphI GGTGA 2 cut(s) 383, 911
Hpy166II GTNNAC 6 cut(s) 119, 366, 583, 664, 736, 864
Hpy188I TCNGA 4 cut(s) 100, 154, 978, 1052
Hpy188III TCNNGA 8 cut(s) 81, 322, 493, 512, 518, 725, 836, 1117
Hpy8I GTNNAC 6 cut(s) 119, 366, 583, 664, 736, 864
HpyCH4III ACNGT 6 cut(s) 60, 116, 410, 488, 537, 913
HpyCH4IV ACGT 3 cut(s) 77, 553, 892
HpyCH4V TGCA 7 cut(s) 68, 423, 591, 654, 753, 927, 936
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 597, 750, 933
HpyF3I CTNAG 4 cut(s) 15, 30, 628, 714
HpySE526I ACGT 3 cut(s) 77, 553, 892
Hsp92II CATG 7 cut(s) 178, 284, 475, 515, 521, 749, 794
Ksp22I TGATCA 2 cut(s) 297, 514
Kzo9I GATC 9 cut(s) 169, 297, 373, 495, 508, 514, 706, 832, 838
LmnI GCTCC 1 cut(s) 244
Lsp1109I GCAGC 4 cut(s) 80, 259, 575, 948
LweI GCATC 1 cut(s) 731
MaeI CTAG 2 cut(s) 123, 867
MaeII ACGT 3 cut(s) 77, 553, 892
MaeIII GTNAC 4 cut(s) 38, 383, 449, 467
MalI GATC 9 cut(s) 171, 299, 375, 497, 510, 516, 708, 834, 840
MboI GATC 9 cut(s) 169, 297, 373, 495, 508, 514, 706, 832, 838
MboII GAAGA 3 cut(s) 820, 890, 1100
MhlI GDGCHC 4 cut(s) 317, 639, 998, 1039
MlsI TGGCCA 1 cut(s) 110
MluCI AATT 7 cut(s) 84, 413, 595, 847, 1053, 1121, 1126
MluNI TGGCCA 1 cut(s) 110
MlyI GAGTC 2 cut(s) 143, 1030
MmeI TCCRAC 2 cut(s) 321, 974
Mox20I TGGCCA 1 cut(s) 110
MscI TGGCCA 1 cut(s) 110
MseI TTAA 4 cut(s) 267, 576, 1056, 1124
MslI CAYNNNNRTG 2 cut(s) 285, 516
Msp20I TGGCCA 1 cut(s) 110
MspA1I CMGCKG 2 cut(s) 71, 588
Mva1269I GAATGC 1 cut(s) 761
MvnI CGCG 1 cut(s) 506
MwoI GCNNNNNNNGC 4 cut(s) 26, 597, 750, 933
NdeI CATATG 2 cut(s) 145, 1099
NdeII GATC 9 cut(s) 169, 297, 373, 495, 508, 514, 706, 832, 838
NlaIII CATG 7 cut(s) 178, 284, 475, 515, 521, 749, 794
NlaIV GGNNCC 1 cut(s) 996
NmeAIII GCCGAG 2 cut(s) 671, 1131
NmuCI GTSAC 1 cut(s) 467
NspI RCATGY 3 cut(s) 284, 475, 794
NspV TTCGAA 1 cut(s) 806
PagI TCATGA 2 cut(s) 511, 517
PciI ACATGT 2 cut(s) 471, 790
PctI GAATGC 1 cut(s) 761
PfeI GAWTC 1 cut(s) 1069
PflMI CCANNNNNTGG 1 cut(s) 460
PkrI GCNGC 4 cut(s) 70, 249, 590, 938
PleI GAGTC 2 cut(s) 143, 1029
PpsI GAGTC 2 cut(s) 143, 1029
PscI ACATGT 2 cut(s) 471, 790
PshBI ATTAAT 1 cut(s) 267
PsiI TTATAA 1 cut(s) 990
PspN4I GGNNCC 1 cut(s) 996
PspOMI GGGCCC 1 cut(s) 994
PspPI GGNCC 3 cut(s) 960, 994, 995
PstI CTGCAG 1 cut(s) 593
PvuII CAGCTG 1 cut(s) 71
RsaI GTAC 2 cut(s) 76, 735
RsaNI GTAC 2 cut(s) 75, 734
RseI CAYNNNNRTG 2 cut(s) 285, 516
SaqAI TTAA 4 cut(s) 267, 576, 1056, 1124
SatI GCNGC 4 cut(s) 69, 248, 589, 937
Sau3AI GATC 9 cut(s) 169, 297, 373, 495, 508, 514, 706, 832, 838
Sau96I GGNCC 3 cut(s) 960, 994, 995
SchI GAGTC 2 cut(s) 143, 1030
SduI GDGCHC 4 cut(s) 317, 639, 998, 1039
SfaNI GCATC 1 cut(s) 731
SfcI CTRYAG 1 cut(s) 589
SfuI TTCGAA 1 cut(s) 806
SmiMI CAYNNNNRTG 2 cut(s) 285, 516
SmlI CTYRAG 3 cut(s) 491, 613, 1002
SmoI CTYRAG 3 cut(s) 491, 613, 1002
SpeI ACTAGT 1 cut(s) 866
Sse9I AATT 7 cut(s) 84, 413, 595, 847, 1053, 1121, 1126
SsiI CCGC 5 cut(s) 194, 311, 506, 586, 852
SspMI CTAG 2 cut(s) 123, 867
StyI CCWWGG 1 cut(s) 963
TaaI ACNGT 6 cut(s) 60, 116, 410, 488, 537, 913
TaiI ACGT 3 cut(s) 80, 556, 895
TaqI TCGA 5 cut(s) 82, 185, 806, 831, 1019
TaqII GACCGA 1 cut(s) 537
TasI AATT 7 cut(s) 84, 413, 595, 847, 1053, 1121, 1126
TatI WGTACW 1 cut(s) 733
TfiI GAWTC 1 cut(s) 1069
Tru1I TTAA 4 cut(s) 267, 576, 1056, 1124
Tru9I TTAA 4 cut(s) 267, 576, 1056, 1124
TscAI CASTG 3 cut(s) 576, 656, 918
TseFI GTSAC 1 cut(s) 467
TseI GCWGC 4 cut(s) 68, 247, 588, 936
Tsp45I GTSAC 1 cut(s) 467
TspDTI ATGAA 5 cut(s) 561, 744, 903, 974, 1101
TspRI CASTG 3 cut(s) 576, 656, 918
Van91I CCANNNNNTGG 1 cut(s) 460
VspI ATTAAT 1 cut(s) 267
XapI RAATTY 1 cut(s) 413
XceI RCATGY 3 cut(s) 284, 475, 794
XmiI GTMKAC 2 cut(s) 365, 582
XspI CTAG 2 cut(s) 123, 867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.