FvH4_2g08000

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
6907833 .. 6909437
1605 bp
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UTR
Exon/CDS
Intron
FvH4_2g08000.t1

Sequence Viewer

Length: 447 bp
ATGGGGGAGAGAGATGATAGGGATATTGGAAGAGTGGCCGCTGCCTCAGTTCCCAGTCCCATTGTGCGGTGTTTTTTAAAGATGTTCATTTGGATTGGGGAGGGTTTGCTTTTGGGAATTGTAGAATGTGCCGCGAACTGGCTCTATAGAGAACTGGACAGAAGATTCCCTGACTTGATTGATGTAGTGGAAGAGAGGGACAATGTTGATGGAGAAGGAAGCGAAAATGAAAATGGATCGAATGTGGCAGCAGAAGTGATGGACAATGAGAATGGTGAAGGAAATGGGAATGAGTTGAATGACAACGGAGTCGGTGAGACAGGAGAAATTAGAGAAAACACTTCTAATGATGAATCCAATGGGGAAGGAGAAGTGAGAGACAACAATGGAGATGGAAGTAGGCCTACTGTTGTGCATCCCATTGGAGGGCTTATTCCGTTCGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.06

Weight (kDa)

4.13

Isoelectric Point (pI)

17.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017596)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 308
AccII CGCG 1 cut(s) 134
AciI CCGC 3 cut(s) 39, 67, 132
AclWI GGATC 1 cut(s) 244
AcoI YGGCCR 1 cut(s) 36
AfiI CCNNNNNNNGG 4 cut(s) 66, 138, 425, 426
AgsI TTSAA 1 cut(s) 298
Alw26I GTCTC 2 cut(s) 311, 372
AlwI GGATC 1 cut(s) 244
AoxI GGCC 2 cut(s) 36, 401
ApeKI GCWGC 2 cut(s) 41, 248
AsuHPI GGTGA 2 cut(s) 287, 326
BarI GAAGNNNNNNTAC 2 cut(s) 388, 420
BbvI GCAGC 2 cut(s) 28, 260
BccI CCATC 3 cut(s) 203, 253, 386
BcoDI GTCTC 2 cut(s) 311, 372
BfmI CTRYAG 1 cut(s) 145
BisI GCNGC 4 cut(s) 39, 42, 132, 249
BlsI GCNGC 4 cut(s) 40, 43, 133, 250
BmrI ACTGGG 1 cut(s) 48
BmsI GCATC 1 cut(s) 424
BmuI ACTGGG 1 cut(s) 48
Bsc4I CCNNNNNNNGG 4 cut(s) 66, 138, 425, 426
Bse1I ACTGG 3 cut(s) 54, 143, 159
BseGI GGATG 1 cut(s) 415
BseLI CCNNNNNNNGG 4 cut(s) 66, 138, 425, 426
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 3 cut(s) 54, 143, 159
BseXI GCAGC 2 cut(s) 28, 260
Bsh1236I CGCG 1 cut(s) 134
BshFI GGCC 2 cut(s) 38, 403
BslFI GGGAC 2 cut(s) 42, 212
BslI CCNNNNNNNGG 4 cut(s) 66, 138, 425, 426
BsmAI GTCTC 2 cut(s) 311, 372
BsmFI GGGAC 2 cut(s) 42, 212
BsnI GGCC 2 cut(s) 38, 403
Bsp143I GATC 1 cut(s) 236
BspACI CCGC 3 cut(s) 39, 67, 132
BspANI GGCC 2 cut(s) 38, 403
BspCNI CTCAG 1 cut(s) 59
BspFNI CGCG 1 cut(s) 134
BspPI GGATC 1 cut(s) 244
BsrI ACTGG 3 cut(s) 54, 143, 159
BssMI GATC 1 cut(s) 236
Bst4CI ACNGT 1 cut(s) 409
Bst6I CTCTTC 2 cut(s) 25, 186
BstDEI CTNAG 1 cut(s) 46
BstF5I GGATG 1 cut(s) 415
BstFNI CGCG 1 cut(s) 134
BstKTI GATC 1 cut(s) 239
BstMAI GTCTC 2 cut(s) 311, 372
BstMBI GATC 1 cut(s) 236
BstSFI CTRYAG 1 cut(s) 145
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 2 cut(s) 28, 260
BsuRI GGCC 2 cut(s) 38, 403
BtsCI GGATG 1 cut(s) 415
CviJI RGCY 4 cut(s) 38, 142, 403, 430
CviKI_1 RGCY 4 cut(s) 38, 142, 403, 430
DdeI CTNAG 1 cut(s) 46
DpnI GATC 1 cut(s) 238
DpnII GATC 1 cut(s) 236
DraI TTTAAA 1 cut(s) 78
DrdI GACNNNNNNGTC 1 cut(s) 308
DseDI GACNNNNNNGTC 1 cut(s) 308
EaeI YGGCCR 1 cut(s) 36
Eam1104I CTCTTC 2 cut(s) 25, 186
EarI CTCTTC 2 cut(s) 25, 186
Eco147I AGGCCT 1 cut(s) 403
FaiI YATR 1 cut(s) 147
FaqI GGGAC 2 cut(s) 42, 212
Fnu4HI GCNGC 4 cut(s) 39, 42, 132, 249
FokI GGATG 1 cut(s) 402
Fsp4HI GCNGC 4 cut(s) 39, 42, 132, 249
GluI GCNGC 4 cut(s) 39, 42, 132, 249
HaeIII GGCC 2 cut(s) 38, 403
HinfI GANTC 3 cut(s) 165, 309, 353
HphI GGTGA 2 cut(s) 287, 326
HpyAV CCTTC 3 cut(s) 209, 272, 359
HpyCH4III ACNGT 1 cut(s) 409
HpyCH4V TGCA 1 cut(s) 415
HpyF3I CTNAG 1 cut(s) 46
Kzo9I GATC 1 cut(s) 236
LpnPI CCDG 5 cut(s) 67, 124, 140, 183, 306
Lsp1109I GCAGC 2 cut(s) 28, 260
LweI GCATC 1 cut(s) 424
MalI GATC 1 cut(s) 238
MboI GATC 1 cut(s) 236
MboII GAAGA 3 cut(s) 42, 174, 203
MluCI AATT 2 cut(s) 117, 327
MlyI GAGTC 1 cut(s) 318
MnlI CCTC 4 cut(s) 55, 94, 189, 419
MseI TTAA 1 cut(s) 77
MspA1I CMGCKG 1 cut(s) 41
MvnI CGCG 1 cut(s) 134
NdeII GATC 1 cut(s) 236
PceI AGGCCT 1 cut(s) 403
PfeI GAWTC 2 cut(s) 165, 353
PkrI GCNGC 4 cut(s) 40, 43, 133, 250
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
SaqAI TTAA 1 cut(s) 77
SatI GCNGC 4 cut(s) 39, 42, 132, 249
Sau3AI GATC 1 cut(s) 236
SchI GAGTC 1 cut(s) 318
SfaNI GCATC 1 cut(s) 424
SfcI CTRYAG 1 cut(s) 145
SgeI CNNG 7 cut(s) 66, 145, 151, 167, 182, 187, 333
Sse9I AATT 2 cut(s) 117, 327
SseBI AGGCCT 1 cut(s) 403
SsiI CCGC 3 cut(s) 39, 67, 132
StuI AGGCCT 1 cut(s) 403
TaaI ACNGT 1 cut(s) 409
TaqI TCGA 1 cut(s) 239
TasI AATT 2 cut(s) 117, 327
TauI GCSGC 2 cut(s) 41, 134
TfiI GAWTC 2 cut(s) 165, 353
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TseI GCWGC 2 cut(s) 41, 248
TspDTI ATGAA 3 cut(s) 76, 243, 366
TspGWI ACGGA 2 cut(s) 321, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.