Rh6CG110800

ER-associated misfolded protein catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0017596
Physical Location & Seq
Forward (+)
12691641 .. 12699827
8187 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG110800.1

Sequence Viewer

Length: 456 bp
ATGGCTTACAGGTTTCAGCTTTACCCTTTGAGCAAGTTCACCTTGGGTTTGGTGAACTGTGAACCCATTTTGGGTTTGGTGGAAGTGGAAGGGTCTAGAAAAACATTAGTGCACCGTTCAACTGTGACGACCCTTCCCCACGTTGAAACCCTCCTCCTACAAGTTGAGGTTGCCGAACTGAAGGATCACCAGTCCAACAAAACCAAGCTCATGGAGACAGGGGATAGGGATATTGGCTTTAGATGCCATATTTGCCATCAATCAGCTGAACAAGGCCCCGTTGTTACACTTTGTGGCCACCTCTACTGCCAATCTTGTTCCTGTACATGGCTTCGACCAGTGCACGTTTGCCCGATTTGTGATGCCCGTTTGGATCCAAGAACTGGACTGCTTCCAATTAGGCCAAGTGGTGTAAGAGTTGCCACTGTCTCAGTTCCCAGTTTCATTGTAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
zf-C3HC4 zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

151

Amino Acids

16.81

Weight (kDa)

8.41

Isoelectric Point (pI)

53.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_2 PF13923 81 - 120 1e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017596)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08000 FvH4_2g08000
rosa_chinensis RchiOBHm_Chr6g0262481
rosa_laevigata RLG00000014422
rosa_roxburghii Rroxscaffold_7G00205220
rosa_rugosa Rorug05G0597600
rosa_samantha Rh6AG118700 Rh6AG118900 Rh6BG112600 Rh6CG110800 Rh6DG100400
rosa_wichuraiana Rw6G010250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 383
AclWI GGATC 3 cut(s) 192, 368, 381
AcoI YGGCCR 1 cut(s) 295
AcuI CTGAAG 1 cut(s) 200
AdeI CACNNNGTG 1 cut(s) 293
AfaI GTAC 1 cut(s) 325
AfiI CCNNNNNNNGG 3 cut(s) 71, 327, 383
AgsI TTSAA 2 cut(s) 120, 146
AluBI AGCT 3 cut(s) 19, 208, 266
AluI AGCT 3 cut(s) 19, 208, 266
Alw21I GWGCWC 2 cut(s) 114, 345
Alw26I GTCTC 2 cut(s) 209, 433
Alw44I GTGCAC 2 cut(s) 110, 341
AlwI GGATC 3 cut(s) 192, 368, 381
AoxI GGCC 3 cut(s) 274, 295, 401
ApaLI GTGCAC 2 cut(s) 110, 341
AspS9I GGNCC 1 cut(s) 275
AsuHPI GGTGA 3 cut(s) 31, 64, 179
BaeGI GKGCMC 2 cut(s) 114, 345
BalI TGGCCA 1 cut(s) 297
BamHI GGATCC 1 cut(s) 373
Bbv12I GWGCWC 2 cut(s) 114, 345
BccI CCATC 1 cut(s) 264
BcoDI GTCTC 2 cut(s) 209, 433
BfaI CTAG 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 275
BmiI GGNNCC 2 cut(s) 277, 375
BmrI ACTGGG 1 cut(s) 432
BmsI GCATC 2 cut(s) 233, 352
BmuI ACTGGG 1 cut(s) 432
BsaJI CCNNGG 1 cut(s) 42
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 327, 383
Bse1I ACTGG 4 cut(s) 190, 338, 388, 438
BseDI CCNNGG 1 cut(s) 42
BseLI CCNNNNNNNGG 3 cut(s) 71, 327, 383
BseMII CTCAG 1 cut(s) 444
BseNI ACTGG 4 cut(s) 190, 338, 388, 438
BseRI GAGGAG 1 cut(s) 143
BseSI GKGCMC 2 cut(s) 114, 345
BshFI GGCC 3 cut(s) 276, 297, 403
BsiHKAI GWGCWC 2 cut(s) 114, 345
BslI CCNNNNNNNGG 3 cut(s) 71, 327, 383
BsmAI GTCTC 2 cut(s) 209, 433
BsnI GGCC 3 cut(s) 276, 297, 403
Bsp1286I GDGCHC 2 cut(s) 114, 345
Bsp1407I TGTACA 1 cut(s) 323
Bsp143I GATC 2 cut(s) 184, 373
BspANI GGCC 3 cut(s) 276, 297, 403
BspCNI CTCAG 1 cut(s) 443
BspLI GGNNCC 2 cut(s) 277, 375
BspPI GGATC 3 cut(s) 192, 368, 381
BsrGI TGTACA 1 cut(s) 323
BsrI ACTGG 4 cut(s) 190, 338, 388, 438
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 2 cut(s) 184, 373
BssT1I CCWWGG 1 cut(s) 42
Bst4CI ACNGT 4 cut(s) 59, 116, 124, 427
BstAUI TGTACA 1 cut(s) 323
BstDEI CTNAG 1 cut(s) 430
BstKTI GATC 2 cut(s) 187, 376
BstMAI GTCTC 2 cut(s) 209, 433
BstMBI GATC 2 cut(s) 184, 373
BstMWI GCNNNNNNNGC 2 cut(s) 243, 252
BstSLI GKGCMC 2 cut(s) 114, 345
BstX2I RGATCY 1 cut(s) 373
BstXI CCANNNNNNTGG 1 cut(s) 211
BstYI RGATCY 1 cut(s) 373
BsuRI GGCC 3 cut(s) 276, 297, 403
BtsIMutI CAGTG 2 cut(s) 345, 423
Cfr13I GGNCC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 324
CviAII CATG 2 cut(s) 211, 327
CviJI RGCY 9 cut(s) 5, 19, 208, 237, 266, 276, 297, 331, 403
CviKI_1 RGCY 9 cut(s) 5, 19, 208, 237, 266, 276, 297, 331, 403
CviQI GTAC 1 cut(s) 324
DdeI CTNAG 1 cut(s) 430
DpnI GATC 2 cut(s) 186, 375
DpnII GATC 2 cut(s) 184, 373
DraIII CACNNNGTG 1 cut(s) 293
EaeI YGGCCR 1 cut(s) 295
Eco130I CCWWGG 1 cut(s) 42
Eco57I CTGAAG 1 cut(s) 200
EcoO109I RGGNCCY 1 cut(s) 275
EcoT14I CCWWGG 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 42
FaeI CATG 2 cut(s) 214, 330
FaiI YATR 3 cut(s) 212, 249, 328
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FatI CATG 2 cut(s) 210, 326
FspBI CTAG 1 cut(s) 96
HaeIII GGCC 3 cut(s) 276, 297, 403
Hin1II CATG 2 cut(s) 214, 330
HphI GGTGA 3 cut(s) 31, 64, 179
Hpy166II GTNNAC 5 cut(s) 39, 55, 62, 112, 343
Hpy188III TCNNGA 1 cut(s) 96
Hpy8I GTNNAC 5 cut(s) 39, 55, 62, 112, 343
HpyAV CCTTC 3 cut(s) 83, 143, 175
HpyCH4III ACNGT 4 cut(s) 59, 116, 124, 427
HpyCH4IV ACGT 2 cut(s) 141, 345
HpyCH4V TGCA 2 cut(s) 112, 343
HpyF10VI GCNNNNNNNGC 2 cut(s) 243, 252
HpyF3I CTNAG 1 cut(s) 430
HpySE526I ACGT 2 cut(s) 141, 345
Hsp92II CATG 2 cut(s) 214, 330
Kzo9I GATC 2 cut(s) 184, 373
LpnPI CCDG 6 cut(s) 203, 204, 334, 351, 369, 451
LweI GCATC 2 cut(s) 233, 352
MaeI CTAG 1 cut(s) 96
MaeII ACGT 2 cut(s) 141, 345
MaeIII GTNAC 2 cut(s) 124, 283
MalI GATC 2 cut(s) 186, 375
MboI GATC 2 cut(s) 184, 373
MflI RGATCY 1 cut(s) 373
MhlI GDGCHC 2 cut(s) 114, 345
MlsI TGGCCA 1 cut(s) 297
MluCI AATT 1 cut(s) 396
MluNI TGGCCA 1 cut(s) 297
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 4 cut(s) 160, 161, 164, 311
Mox20I TGGCCA 1 cut(s) 297
MscI TGGCCA 1 cut(s) 297
Msp20I TGGCCA 1 cut(s) 297
MspA1I CMGCKG 1 cut(s) 266
MwoI GCNNNNNNNGC 2 cut(s) 243, 252
NdeII GATC 2 cut(s) 184, 373
NlaIII CATG 2 cut(s) 214, 330
NlaIV GGNNCC 2 cut(s) 277, 375
NmuCI GTSAC 1 cut(s) 124
PflMI CCANNNNNTGG 1 cut(s) 383
PspN4I GGNNCC 2 cut(s) 277, 375
PspPI GGNCC 1 cut(s) 275
PsuI RGATCY 1 cut(s) 373
PvuII CAGCTG 1 cut(s) 266
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
Sau3AI GATC 2 cut(s) 184, 373
Sau96I GGNCC 1 cut(s) 275
SduI GDGCHC 2 cut(s) 114, 345
SetI ASST 9 cut(s) 14, 21, 44, 144, 171, 210, 268, 303, 348
SfaNI GCATC 2 cut(s) 233, 352
Sse9I AATT 1 cut(s) 396
SspMI CTAG 1 cut(s) 96
StyI CCWWGG 1 cut(s) 42
TaaI ACNGT 4 cut(s) 59, 116, 124, 427
TaiI ACGT 2 cut(s) 144, 348
TaqI TCGA 1 cut(s) 334
TasI AATT 1 cut(s) 396
TatI WGTACW 1 cut(s) 323
TscAI CASTG 2 cut(s) 345, 430
TseFI GTSAC 1 cut(s) 124
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 1 cut(s) 433
TspRI CASTG 2 cut(s) 345, 430
Van91I CCANNNNNTGG 1 cut(s) 383
VneI GTGCAC 2 cut(s) 110, 341
XbaI TCTAGA 1 cut(s) 95
XcmI CCANNNNNNNNNTGG 1 cut(s) 73
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.