Rroxscaffold_7G00205220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0017596
Physical Location & Seq
Reverse (-)
54780402 .. 54781908
1507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00205220.1

Sequence Viewer

Length: 720 bp
ATGTTTGCCCGGTTTGTGATGTCCATTTGGATCCAAGAACTGGACTGCTTCCAATTAGGCCAAGTGGGTGTAAGAATTGCCACTGTCTCAGTTCCCAGTTTCATTGTGGAGTATTTGTGTCACATGTTCATTCGGTTTGGGGAGGGTTTGCTTTTGGGCATTTTAGAACGTACTGTGAACTGGCTAAATGAAGCACTGGACAGAAGATTCCCCGACTTGTTTGATGTAGTGGAAGAAAGGGACAATGTTGAAGGAGAAGGAAGCGAAAATGACACTGGATCGAATGTGGCAGCAGAAGTGATGGACAATGTGAACGGAGAAGGAAGCGGAAATGACAATGGAGTTAGTGAGACGGTAGAAATGAGTGAAAACACCTATGGAGAGGCAAGCATGACTAACGATGGATCCAATGGGGAAGGAGAACTTTTTAGCCAGCTTATTGAGCGTCAAGACAGCTTCGAAGGTGGTGGGTGTTTGCTGGTCACAAAGGCCAGCGCAGTGCAGGCAGCTGACCATTCATCTTTGAGTAATGCCATGGTAATGATTCTTCTTCTGGAGGCCACGATTATGTGGTCTGTTCATGCTCATGTTCCTATTCAAGATGCGTTCGCTTACAATTGCAATCGCCAATTCGCCATTGATAATTGGATGAAGTATAATGCTAACAAAAGAGTCTGGCTGCCAGCATATGGTGAAAAGTTTCTCAGTATGGAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

26.59

Weight (kDa)

4.3

Isoelectric Point (pI)

31.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017596)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08000 FvH4_2g08000
rosa_chinensis RchiOBHm_Chr6g0262481
rosa_laevigata RLG00000014422
rosa_roxburghii Rroxscaffold_7G00205220
rosa_rugosa Rorug05G0597600
rosa_samantha Rh6AG118700 Rh6AG118900 Rh6BG112600 Rh6CG110800 Rh6DG100400
rosa_wichuraiana Rw6G010250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 40, 689
AciI CCGC 1 cut(s) 327
AclWI GGATC 5 cut(s) 25, 38, 286, 399, 412
AfaI GTAC 1 cut(s) 172
AfiI CCNNNNNNNGG 2 cut(s) 40, 689
AflIII ACRYGT 1 cut(s) 123
AgsI TTSAA 2 cut(s) 251, 599
AluBI AGCT 3 cut(s) 436, 456, 509
AluI AGCT 3 cut(s) 436, 456, 509
Alw26I GTCTC 2 cut(s) 91, 344
AlwI GGATC 5 cut(s) 25, 38, 286, 399, 412
AoxI GGCC 3 cut(s) 58, 489, 558
ApeKI GCWGC 3 cut(s) 290, 506, 679
Asp700I GAANNNNTTC 1 cut(s) 699
AspLEI GCGC 1 cut(s) 497
AsuC2I CCSGG 1 cut(s) 10
AsuHPI GGTGA 1 cut(s) 704
AsuII TTCGAA 1 cut(s) 459
BamHI GGATCC 2 cut(s) 30, 404
BarI GAAGNNNNNNTAC 2 cut(s) 531, 563
BbvI GCAGC 3 cut(s) 302, 518, 666
BccI CCATC 2 cut(s) 295, 395
BcnI CCSGG 1 cut(s) 10
BcoDI GTCTC 2 cut(s) 91, 344
BfaI CTAG 1 cut(s) 718
BisI GCNGC 3 cut(s) 291, 507, 680
BlsI GCNGC 3 cut(s) 292, 508, 681
Bme1390I CCNGG 1 cut(s) 10
BmiI GGNNCC 2 cut(s) 32, 406
BmrFI CCNGG 1 cut(s) 10
BmrI ACTGGG 1 cut(s) 90
BmsI GCATC 1 cut(s) 592
BmuI ACTGGG 1 cut(s) 90
BpmI CTGGAG 1 cut(s) 575
Bpu14I TTCGAA 1 cut(s) 459
BpuMI CCSGG 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 534
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 689
Bse1I ACTGG 5 cut(s) 45, 96, 185, 201, 280
BseDI CCNNGG 1 cut(s) 534
BseGI GGATG 1 cut(s) 654
BseLI CCNNNNNNNGG 2 cut(s) 40, 689
BseMII CTCAG 2 cut(s) 102, 718
BseNI ACTGG 5 cut(s) 45, 96, 185, 201, 280
BseXI GCAGC 3 cut(s) 302, 518, 666
BsgI GTGCAG 1 cut(s) 521
BshFI GGCC 3 cut(s) 60, 491, 560
BsiSI CCGG 1 cut(s) 10
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 2 cut(s) 40, 689
BsmAI GTCTC 2 cut(s) 91, 344
BsmBI CGTCTC 1 cut(s) 344
BsmFI GGGAC 1 cut(s) 254
BsnI GGCC 3 cut(s) 60, 491, 560
Bsp119I TTCGAA 1 cut(s) 459
Bsp143I GATC 3 cut(s) 30, 278, 404
Bsp19I CCATGG 1 cut(s) 534
BspACI CCGC 1 cut(s) 327
BspANI GGCC 3 cut(s) 60, 491, 560
BspCNI CTCAG 2 cut(s) 101, 717
BspLI GGNNCC 2 cut(s) 32, 406
BspPI GGATC 5 cut(s) 25, 38, 286, 399, 412
BspT104I TTCGAA 1 cut(s) 459
BsrI ACTGG 5 cut(s) 45, 96, 185, 201, 280
BssECI CCNNGG 1 cut(s) 534
BssMI GATC 3 cut(s) 30, 278, 404
BssT1I CCWWGG 1 cut(s) 534
Bst4CI ACNGT 3 cut(s) 85, 175, 355
BstBI TTCGAA 1 cut(s) 459
BstC8I GCNNGC 5 cut(s) 388, 434, 493, 504, 684
BstDEI CTNAG 2 cut(s) 88, 704
BstDSI CCRYGG 1 cut(s) 534
BstF5I GGATG 1 cut(s) 654
BstHHI GCGC 1 cut(s) 497
BstKTI GATC 3 cut(s) 33, 281, 407
BstMAI GTCTC 2 cut(s) 91, 344
BstMBI GATC 3 cut(s) 30, 278, 404
BstMWI GCNNNNNNNGC 2 cut(s) 442, 503
BstNSI RCATGY 1 cut(s) 127
BstSCI CCNGG 1 cut(s) 8
BstV1I GCAGC 3 cut(s) 302, 518, 666
BstX2I RGATCY 2 cut(s) 30, 404
BstYI RGATCY 2 cut(s) 30, 404
BsuRI GGCC 3 cut(s) 60, 491, 560
BtgI CCRYGG 1 cut(s) 534
BtsCI GGATG 1 cut(s) 654
BtsI GCAGTG 1 cut(s) 504
BtsIMutI CAGTG 4 cut(s) 81, 194, 273, 504
Cac8I GCNNGC 5 cut(s) 388, 434, 493, 504, 684
CfoI GCGC 1 cut(s) 497
CseI GACGC 1 cut(s) 434
Csp6I GTAC 1 cut(s) 171
CviAII CATG 5 cut(s) 124, 391, 535, 581, 587
CviJI RGCY 9 cut(s) 60, 184, 432, 436, 456, 491, 509, 560, 679
CviKI_1 RGCY 9 cut(s) 60, 184, 432, 436, 456, 491, 509, 560, 679
CviQI GTAC 1 cut(s) 171
DdeI CTNAG 2 cut(s) 88, 704
DpnI GATC 3 cut(s) 32, 280, 406
DpnII GATC 3 cut(s) 30, 278, 404
Eco130I CCWWGG 1 cut(s) 534
EcoT14I CCWWGG 1 cut(s) 534
ErhI CCWWGG 1 cut(s) 534
Esp3I CGTCTC 1 cut(s) 344
FaeI CATG 5 cut(s) 127, 394, 538, 584, 590
FalI AAGNNNNNCTT 2 cut(s) 408, 440
FaqI GGGAC 1 cut(s) 254
FatI CATG 5 cut(s) 123, 390, 534, 580, 586
FauNDI CATATG 1 cut(s) 688
Fnu4HI GCNGC 3 cut(s) 291, 507, 680
FokI GGATG 1 cut(s) 661
Fsp4HI GCNGC 3 cut(s) 291, 507, 680
FspBI CTAG 1 cut(s) 718
GlaI GCGC 1 cut(s) 496
GluI GCNGC 3 cut(s) 291, 507, 680
GsuI CTGGAG 1 cut(s) 575
HaeIII GGCC 3 cut(s) 60, 491, 560
HapII CCGG 1 cut(s) 10
HgaI GACGC 1 cut(s) 434
HhaI GCGC 1 cut(s) 497
Hin1II CATG 5 cut(s) 127, 394, 538, 584, 590
Hin6I GCGC 1 cut(s) 495
HinP1I GCGC 1 cut(s) 495
HinfI GANTC 3 cut(s) 207, 544, 672
HpaII CCGG 1 cut(s) 10
HphI GGTGA 1 cut(s) 704
Hpy166II GTNNAC 2 cut(s) 178, 313
Hpy188III TCNNGA 3 cut(s) 449, 554, 599
Hpy8I GTNNAC 2 cut(s) 178, 313
HpyAV CCTTC 5 cut(s) 245, 251, 314, 410, 455
HpyCH4III ACNGT 3 cut(s) 85, 175, 355
HpyCH4IV ACGT 1 cut(s) 169
HpyCH4V TGCA 2 cut(s) 502, 621
HpyF10VI GCNNNNNNNGC 2 cut(s) 442, 503
HpyF3I CTNAG 2 cut(s) 88, 704
HpySE526I ACGT 1 cut(s) 169
Hsp92II CATG 5 cut(s) 127, 394, 538, 584, 590
HspAI GCGC 1 cut(s) 495
Kzo9I GATC 3 cut(s) 30, 278, 404
Lsp1109I GCAGC 3 cut(s) 302, 518, 666
LweI GCATC 1 cut(s) 592
MaeI CTAG 1 cut(s) 718
MaeII ACGT 1 cut(s) 169
MaeIII GTNAC 2 cut(s) 119, 481
MalI GATC 3 cut(s) 32, 280, 406
MboI GATC 3 cut(s) 30, 278, 404
MboII GAAGA 4 cut(s) 216, 245, 539, 542
MfeI CAATTG 1 cut(s) 616
MflI RGATCY 2 cut(s) 30, 404
MluCI AATT 5 cut(s) 53, 75, 616, 629, 643
MlyI GAGTC 1 cut(s) 681
MnlI CCTC 4 cut(s) 136, 376, 550, 706
MroXI GAANNNNTTC 1 cut(s) 699
MslI CAYNNNNRTG 3 cut(s) 539, 566, 585
MspA1I CMGCKG 1 cut(s) 509
MspI CCGG 1 cut(s) 10
MspR9I CCNGG 1 cut(s) 10
MunI CAATTG 1 cut(s) 616
MwoI GCNNNNNNNGC 2 cut(s) 442, 503
NciI CCSGG 1 cut(s) 10
NcoI CCATGG 1 cut(s) 534
NdeI CATATG 1 cut(s) 688
NdeII GATC 3 cut(s) 30, 278, 404
NlaIII CATG 5 cut(s) 127, 394, 538, 584, 590
NlaIV GGNNCC 2 cut(s) 32, 406
NmuCI GTSAC 2 cut(s) 119, 481
NspI RCATGY 1 cut(s) 127
NspV TTCGAA 1 cut(s) 459
PciI ACATGT 1 cut(s) 123
PdmI GAANNNNTTC 1 cut(s) 699
PfeI GAWTC 2 cut(s) 207, 544
PflMI CCANNNNNTGG 2 cut(s) 40, 689
PkrI GCNGC 3 cut(s) 292, 508, 681
PleI GAGTC 1 cut(s) 680
PpsI GAGTC 1 cut(s) 680
PscI ACATGT 1 cut(s) 123
PspN4I GGNNCC 2 cut(s) 32, 406
PsuI RGATCY 2 cut(s) 30, 404
PvuII CAGCTG 1 cut(s) 509
RsaI GTAC 1 cut(s) 172
RsaNI GTAC 1 cut(s) 171
RseI CAYNNNNRTG 3 cut(s) 539, 566, 585
SatI GCNGC 3 cut(s) 291, 507, 680
Sau3AI GATC 3 cut(s) 30, 278, 404
SchI GAGTC 1 cut(s) 681
ScrFI CCNGG 1 cut(s) 10
SetI ASST 6 cut(s) 172, 377, 438, 458, 466, 511
SfaNI GCATC 1 cut(s) 592
SfuI TTCGAA 1 cut(s) 459
SmiMI CAYNNNNRTG 3 cut(s) 539, 566, 585
Sse9I AATT 5 cut(s) 53, 75, 616, 629, 643
SsiI CCGC 1 cut(s) 327
SspMI CTAG 1 cut(s) 718
StyD4I CCNGG 1 cut(s) 8
StyI CCWWGG 1 cut(s) 534
TaaI ACNGT 3 cut(s) 85, 175, 355
TaiI ACGT 1 cut(s) 172
TaqI TCGA 2 cut(s) 281, 459
TasI AATT 5 cut(s) 53, 75, 616, 629, 643
TfiI GAWTC 2 cut(s) 207, 544
TscAI CASTG 4 cut(s) 88, 201, 280, 504
TseFI GTSAC 2 cut(s) 119, 481
TseI GCWGC 3 cut(s) 290, 506, 679
Tsp45I GTSAC 2 cut(s) 119, 481
TspDTI ATGAA 6 cut(s) 91, 118, 204, 507, 569, 665
TspGWI ACGGA 1 cut(s) 330
TspRI CASTG 4 cut(s) 88, 201, 280, 504
Van91I CCANNNNNTGG 2 cut(s) 40, 689
XceI RCATGY 1 cut(s) 127
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
XmnI GAANNNNTTC 1 cut(s) 699
XspI CTAG 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.