RLG00000014422

ER-associated misfolded protein catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0017596
Physical Location & Seq
Reverse (-)
53004696 .. 53005544
849 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014422

Sequence Viewer

Length: 759 bp
ATGTACTTTGTGATTTTCAAGCTCATGGAGAGAGAGGATAGGGATATTGGCTTTAGATGCCATATTTGCTATCAATCAGCAGAACAAGGCCCCGTTGTTACACCTTGCGGCCACCTCTACTGCCAGTCTTGTTCCTGTACATGGCTTCGACCAGTAGATGTTTGCCCGGTTTGTGATGTCCATTTGGATCCAAGAACTGGACTGCTTCCAATTAGGCCAAGTGGTGTAAGAATTGCCACTGTCTCAGTTCCCAGTTTCGTTGTGGAGTATTTGTGTCACATGTTCATTCGGTTTGGGGAGGGTTTGCTTTTGGGCATTTTAGAACGTACCGTGAACTGGCTTACTGAAGCACTGGACAGAAGATTCCCCGACTTGATTGATGTGGTGGAAGAGAGGGACAATGTTGAAGGAGAAGGAAGCGAAAATGACACTGGATCGAATGTGCCAGCAGAAGTGATGGACAATGTGAATGGAGAAGGAAGCGGAAATGACAATGGAGTTAGTGAGACGGTAGAAATGAGTGAAAACACCTATGGAGAGGCAAGCATGGCTAACGATGGATCCAATGGGGAAGGAGAAGTGAGGGACAACAATGGAGATGGAAGCAGTCCTACTGTTGTGCATCCCAATGGAGGGCTTATTCCTCTCAAGTCCCAGCCGTTTGTTAGACAAAGCATGGATCCGAAAATTAAGGTCATATGGTTACACGTTACAACAGATTCTTGGCTATTGTCACATGTTGAAACTGGGAATGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
zf-C3HC4 zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

253

Amino Acids

27.79

Weight (kDa)

4.54

Isoelectric Point (pI)

41.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_2 PF13923 19 - 58 1.7e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 19 - 58 1e-06 Ring finger domain
zf-C3HC4_3 PF13920 19 - 61 1.7e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_5 PF14634 19 - 59 2.4e-06 zinc-RING finger domain
zf-C3HC4 PF00097 20 - 58 3e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017596)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08000 FvH4_2g08000
rosa_chinensis RchiOBHm_Chr6g0262481
rosa_laevigata RLG00000014422
rosa_roxburghii Rroxscaffold_7G00205220
rosa_rugosa Rorug05G0597600
rosa_samantha Rh6AG118700 Rh6AG118900 Rh6BG112600 Rh6CG110800 Rh6DG100400
rosa_wichuraiana Rw6G010250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 197
AciI CCGC 2 cut(s) 108, 483
AclWI GGATC 7 cut(s) 182, 195, 442, 555, 568, 674, 687
AcoI YGGCCR 1 cut(s) 109
AcuI CTGAAG 1 cut(s) 366
AfaI GTAC 3 cut(s) 5, 139, 328
AfiI CCNNNNNNNGG 5 cut(s) 141, 197, 336, 632, 633
AflIII ACRYGT 3 cut(s) 279, 706, 736
AgsI TTSAA 3 cut(s) 19, 407, 743
AluBI AGCT 1 cut(s) 22
AluI AGCT 1 cut(s) 22
Alw26I GTCTC 2 cut(s) 247, 500
AlwI GGATC 7 cut(s) 182, 195, 442, 555, 568, 674, 687
AoxI GGCC 3 cut(s) 88, 109, 215
AspS9I GGNCC 1 cut(s) 89
AsuC2I CCSGG 1 cut(s) 167
BamHI GGATCC 3 cut(s) 187, 560, 679
BarI GAAGNNNNNNTAC 2 cut(s) 595, 627
BccI CCATC 3 cut(s) 451, 551, 593
BceAI ACGGC 1 cut(s) 643
BcnI CCSGG 1 cut(s) 167
BcoDI GTCTC 2 cut(s) 247, 500
BisI GCNGC 1 cut(s) 109
BlsI GCNGC 1 cut(s) 110
Bme1390I CCNGG 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 89
BmiI GGNNCC 4 cut(s) 91, 189, 562, 681
BmrFI CCNGG 1 cut(s) 167
BmrI ACTGGG 2 cut(s) 246, 756
BmsI GCATC 2 cut(s) 47, 631
BmuI ACTGGG 2 cut(s) 246, 756
BpuEI CTTGAG 1 cut(s) 632
BpuMI CCSGG 1 cut(s) 167
BsaXI ACNNNNNCTCC 2 cut(s) 257, 287
Bsc4I CCNNNNNNNGG 5 cut(s) 141, 197, 336, 632, 633
Bse1I ACTGG 8 cut(s) 124, 152, 202, 252, 341, 357, 436, 751
BseGI GGATG 1 cut(s) 622
BseLI CCNNNNNNNGG 5 cut(s) 141, 197, 336, 632, 633
BseMII CTCAG 1 cut(s) 258
BseNI ACTGG 8 cut(s) 124, 152, 202, 252, 341, 357, 436, 751
BseYI CCCAGC 1 cut(s) 654
BshFI GGCC 3 cut(s) 90, 111, 217
BsiSI CCGG 1 cut(s) 167
BslFI GGGAC 3 cut(s) 410, 599, 637
BslI CCNNNNNNNGG 5 cut(s) 141, 197, 336, 632, 633
BsmAI GTCTC 2 cut(s) 247, 500
BsmBI CGTCTC 1 cut(s) 500
BsmFI GGGAC 3 cut(s) 410, 599, 637
BsnI GGCC 3 cut(s) 90, 111, 217
Bsp1407I TGTACA 1 cut(s) 137
Bsp143I GATC 4 cut(s) 187, 434, 560, 679
BspACI CCGC 2 cut(s) 108, 483
BspANI GGCC 3 cut(s) 90, 111, 217
BspCNI CTCAG 1 cut(s) 257
BspLI GGNNCC 4 cut(s) 91, 189, 562, 681
BspPI GGATC 7 cut(s) 182, 195, 442, 555, 568, 674, 687
BsrGI TGTACA 1 cut(s) 137
BsrI ACTGG 8 cut(s) 124, 152, 202, 252, 341, 357, 436, 751
BssMI GATC 4 cut(s) 187, 434, 560, 679
Bst4CI ACNGT 4 cut(s) 241, 331, 511, 616
Bst6I CTCTTC 1 cut(s) 384
BstAUI TGTACA 1 cut(s) 137
BstC8I GCNNGC 2 cut(s) 447, 544
BstDEI CTNAG 1 cut(s) 244
BstF5I GGATG 1 cut(s) 622
BstKTI GATC 4 cut(s) 190, 437, 563, 682
BstMAI GTCTC 2 cut(s) 247, 500
BstMBI GATC 4 cut(s) 187, 434, 560, 679
BstMWI GCNNNNNNNGC 3 cut(s) 57, 66, 548
BstNSI RCATGY 2 cut(s) 283, 740
BstSCI CCNGG 1 cut(s) 165
BstX2I RGATCY 3 cut(s) 187, 560, 679
BstYI RGATCY 3 cut(s) 187, 560, 679
BsuRI GGCC 3 cut(s) 90, 111, 217
BtsCI GGATG 1 cut(s) 622
BtsIMutI CAGTG 3 cut(s) 237, 350, 429
Cac8I GCNNGC 2 cut(s) 447, 544
Cfr13I GGNCC 1 cut(s) 89
Csp6I GTAC 3 cut(s) 4, 138, 327
CviAII CATG 6 cut(s) 25, 141, 280, 547, 676, 737
CviQI GTAC 3 cut(s) 4, 138, 327
DdeI CTNAG 1 cut(s) 244
DpnI GATC 4 cut(s) 189, 436, 562, 681
DpnII GATC 4 cut(s) 187, 434, 560, 679
EaeI YGGCCR 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
Eco57I CTGAAG 1 cut(s) 366
EcoO109I RGGNCCY 1 cut(s) 89
Esp3I CGTCTC 1 cut(s) 500
FaeI CATG 6 cut(s) 28, 144, 283, 550, 679, 740
FaqI GGGAC 3 cut(s) 410, 599, 637
FatI CATG 6 cut(s) 24, 140, 279, 546, 675, 736
FauNDI CATATG 1 cut(s) 698
Fnu4HI GCNGC 1 cut(s) 109
FokI GGATG 1 cut(s) 609
Fsp4HI GCNGC 1 cut(s) 109
GluI GCNGC 1 cut(s) 109
GsaI CCCAGC 1 cut(s) 658
HaeIII GGCC 3 cut(s) 90, 111, 217
HapII CCGG 1 cut(s) 167
Hin1II CATG 6 cut(s) 28, 144, 283, 550, 679, 740
HinfI GANTC 2 cut(s) 363, 719
HpaII CCGG 1 cut(s) 167
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 1 cut(s) 684
Hpy8I GTNNAC 1 cut(s) 334
HpyAV CCTTC 4 cut(s) 401, 407, 470, 566
HpyCH4III ACNGT 4 cut(s) 241, 331, 511, 616
HpyCH4IV ACGT 2 cut(s) 325, 708
HpyCH4V TGCA 1 cut(s) 622
HpyF10VI GCNNNNNNNGC 3 cut(s) 57, 66, 548
HpyF3I CTNAG 1 cut(s) 244
HpySE526I ACGT 2 cut(s) 325, 708
Hsp92II CATG 6 cut(s) 28, 144, 283, 550, 679, 740
Kzo9I GATC 4 cut(s) 187, 434, 560, 679
LweI GCATC 2 cut(s) 47, 631
MaeII ACGT 2 cut(s) 325, 708
MaeIII GTNAC 5 cut(s) 97, 275, 702, 709, 732
MalI GATC 4 cut(s) 189, 436, 562, 681
MboI GATC 4 cut(s) 187, 434, 560, 679
MboII GAAGA 2 cut(s) 372, 401
MflI RGATCY 3 cut(s) 187, 560, 679
MluCI AATT 3 cut(s) 210, 231, 687
MnlI CCTC 8 cut(s) 28, 125, 292, 387, 532, 576, 626, 654
MseI TTAA 1 cut(s) 690
MslI CAYNNNNRTG 1 cut(s) 627
MspI CCGG 1 cut(s) 167
MspR9I CCNGG 1 cut(s) 167
MwoI GCNNNNNNNGC 3 cut(s) 57, 66, 548
NciI CCSGG 1 cut(s) 167
NdeI CATATG 1 cut(s) 698
NdeII GATC 4 cut(s) 187, 434, 560, 679
NlaIII CATG 6 cut(s) 28, 144, 283, 550, 679, 740
NlaIV GGNNCC 4 cut(s) 91, 189, 562, 681
NmuCI GTSAC 2 cut(s) 275, 732
NspI RCATGY 2 cut(s) 283, 740
PciI ACATGT 2 cut(s) 279, 736
PfeI GAWTC 2 cut(s) 363, 719
PflMI CCANNNNNTGG 1 cut(s) 197
PkrI GCNGC 1 cut(s) 110
PscI ACATGT 2 cut(s) 279, 736
PspFI CCCAGC 1 cut(s) 654
PspN4I GGNNCC 4 cut(s) 91, 189, 562, 681
PspPI GGNCC 1 cut(s) 89
PsuI RGATCY 3 cut(s) 187, 560, 679
RsaI GTAC 3 cut(s) 5, 139, 328
RsaNI GTAC 3 cut(s) 4, 138, 327
RseI CAYNNNNRTG 1 cut(s) 627
SaqAI TTAA 1 cut(s) 690
SatI GCNGC 1 cut(s) 109
Sau3AI GATC 4 cut(s) 187, 434, 560, 679
Sau96I GGNCC 1 cut(s) 89
ScrFI CCNGG 1 cut(s) 167
SetI ASST 7 cut(s) 24, 106, 117, 328, 533, 696, 711
SfaNI GCATC 2 cut(s) 47, 631
SmiMI CAYNNNNRTG 1 cut(s) 627
SmlI CTYRAG 1 cut(s) 647
SmoI CTYRAG 1 cut(s) 647
Sse9I AATT 3 cut(s) 210, 231, 687
SsiI CCGC 2 cut(s) 108, 483
StyD4I CCNGG 1 cut(s) 165
TaaI ACNGT 4 cut(s) 241, 331, 511, 616
TaiI ACGT 2 cut(s) 328, 711
TaqI TCGA 2 cut(s) 148, 437
TasI AATT 3 cut(s) 210, 231, 687
TatI WGTACW 2 cut(s) 3, 137
TauI GCSGC 1 cut(s) 111
TfiI GAWTC 2 cut(s) 363, 719
Tru1I TTAA 1 cut(s) 690
Tru9I TTAA 1 cut(s) 690
TscAI CASTG 3 cut(s) 244, 357, 436
TseFI GTSAC 2 cut(s) 275, 732
Tsp45I GTSAC 2 cut(s) 275, 732
TspDTI ATGAA 1 cut(s) 274
TspRI CASTG 3 cut(s) 244, 357, 436
Van91I CCANNNNNTGG 1 cut(s) 197
XceI RCATGY 2 cut(s) 283, 740
XcmI CCANNNNNNNNNTGG 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.