Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010428

Physical Location & Seq

Genomic Coordinates Reverse (-)

7121819 .. 7125041

Gene Structure 3223 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g08180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGGAAGCCATATGAGCAAGAAGAGTAACACCGAGACGTCGTCGTCTGCTATAAATCTGACCACTTTTCAGTACACAACTGATCAGTTGAGCTCGTATGAGGCTGCTTGCAAGGTTGATGCAGACTTGCAGTCTTTTGATACCAACCTCCAAAACCGAACCAATCAAGTCATCAGCACTCTTGCAGCAGGAGTTGAAGTTCGAGCTCTGTCGTTCGATTCTTTGAAAGAAGTCACAGAATGTCTGTTGGAGATGAACCAGGAGGTTGTGAAGGTAATACTGGAATGCAAGAAAGATATATGGAAGAATCAAGAATTGTTCGAGCTGGTTGAGGAGTACTTTGAAAATAGCTTGCAGACTCTAGACTTTTGTACTGCATTGGAGAAGTGCCTGAAGAGAGCTCGTGATAGTCAATTGCTCATTCTTGTTGCCCTTCAACAATTCGAGGAGGAAACTGAGGTGGGAGGCAGCCGGTACACAAGGACATTGGCGGAGTTGAAGAATTTTAAGGCTGCTGGTGATCCTTTTACTGAAGAGTTCTTCCAAATGTTTCAAACTGTTTACAGGCAACAACTGCTAATGCTTGAGAAGTTGCACCTCCGAAAGAACAAGCTGGATAAGAAGCTCAAGTACATAAATGCTTGGAGGAAGGTCTCGAGTATCATATTTGTTGCTACCTTTGCTGCTGTCTTGATTTGTTCAGTTGTGGCTGCAGCCATGGCTGCTCCGCCTGTTGCAGCAGCTCTGGCTGCTGCGACTTCTATCCCCATTGGTTCAATGGGGAAATGGATTGACTCTTTGTGGAAGAATTATGAAAGTGCTATGAAGGGTCAGAAGGAAGTAATTAGCTCAATGCAAGTGGGAACTTATGTAGCCATCAAGGACTTGGACAGCATTCGAGTTCTGATTGACCGACTGGAAATTGAAATTCAGTCGCTCATGGATAATGCGAGCTTTGCTATTGAGCAAGAAGCAGTCAGGATTGCAATAGAGGAGATTAAGAAGAAGTTGGGAGTATTTATGAAGAATGTTGAGGAATTGGGATCTCAAGCTGATATCTGCAGCCGAGACATTCGAAGAGCAAGGACTGTGGTTCTGCAGAGGATCATCAAGCATAGCAACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

376

Amino Acids

42.32

Weight (kDa)

5.88

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ROH1-like	PF05633	25 - 164	8.4e-09	Protein ROH1-like
DUF677	PF05055	43 - 369	2e-137	Protein of unknown function (DUF677)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34320 AT4G34320
fragaria_vesca	FvH4_2g08180 FvH4_2g08180
malus_domestica	MD05G1070600.v1.1 MD10G1081600.v1.1
prunus_persica	Prupe.8G103100_v2.0.a1 Prupe.8G103100_v2.0.a1 Prupe.8G103100_v2.0.a1
pyrus_communis	pycom10g06450
rosa_chinensis	RchiOBHm_Chr6g0262961
rosa_laevigata	RLG00000014389
rosa_multiflora	Rmu_sc0006493.1_g000001
rosa_roxburghii	Rroxscaffold_7G00204820
rosa_rugosa	Rorug06G0002500 Rorug06G0002600
rosa_samantha	Rh6AG121300 Rh6BG114900 Rh6CG113300 Rh6DG102600
rosa_wichuraiana	Rw6G010410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	43
AatII	GACGTC	1 cut(s)	41
AciI	CCGC	2 cut(s)	491, 728
AclWI	GGATC	3 cut(s)	515, 1051, 1112
AcsI	RAATTY	2 cut(s)	502, 927
AcuI	CTGAAG	2 cut(s)	413, 552
AcyI	GRCGYC	1 cut(s)	38
AfaI	GTAC	5 cut(s)	74, 338, 373, 476, 632
AgsI	TTSAA	8 cut(s)	197, 226, 344, 437, 499, 554, 777, 926
AhdI	GACNNNNNGTC	1 cut(s)	130
AjnI	CCWGG	1 cut(s)	258
AloI	GAACNNNNNNTCC	2 cut(s)	183, 215
Alw21I	GWGCWC	3 cut(s)	95, 208, 403
Alw26I	GTCTC	3 cut(s)	29, 658, 1062
AlwI	GGATC	3 cut(s)	515, 1051, 1112
Ama87I	CYCGRG	1 cut(s)	655
ApoI	RAATTY	2 cut(s)	502, 927
AsuHPI	GGTGA	1 cut(s)	530
AsuII	TTCGAA	1 cut(s)	1075
AvaI	CYCGRG	1 cut(s)	655
BanII	GRGCYC	3 cut(s)	95, 208, 403
BarI	GAAGNNNNNNTAC	2 cut(s)	614, 646
BauI	CACGAG	1 cut(s)	402
Bbv12I	GWGCWC	3 cut(s)	95, 208, 403
BccI	CCATC	1 cut(s)	884
BciT130I	CCWGG	1 cut(s)	260
BclI	TGATCA	1 cut(s)	82
BcoDI	GTCTC	3 cut(s)	29, 658, 1062
BfaI	CTAG	1 cut(s)	362
BfmI	CTRYAG	3 cut(s)	711, 1060, 1097
BmcAI	AGTACT	1 cut(s)	338
Bme1390I	CCNGG	1 cut(s)	260
BmeRI	GACNNNNNGTC	1 cut(s)	130
BmeT110I	CYCGRG	1 cut(s)	655
BmrFI	CCNGG	1 cut(s)	260
BmsI	GCATC	1 cut(s)	109
Bpu14I	TTCGAA	1 cut(s)	1075
BpuEI	CTTGAG	3 cut(s)	605, 611, 1032
BsaHI	GRCGYC	1 cut(s)	38
BsaI	GGTCTC	1 cut(s)	658
BsaJI	CCNNGG	1 cut(s)	717
BsaXI	ACNNNNNCTCC	2 cut(s)	183, 213
Bse118I	RCCGGY	1 cut(s)	471
Bse1I	ACTGG	2 cut(s)	285, 921
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	717
BseMII	CTCAG	1 cut(s)	447
BseNI	ACTGG	2 cut(s)	285, 921
BseRI	GAGGAG	3 cut(s)	347, 461, 1007
BsiHKAI	GWGCWC	3 cut(s)	95, 208, 403
BsiHKCI	CYCGRG	1 cut(s)	655
BsiSI	CCGG	1 cut(s)	472
BsmAI	GTCTC	3 cut(s)	29, 658, 1062
BsmBI	CGTCTC	1 cut(s)	29
BsmI	GAATGC	2 cut(s)	290, 894
Bso31I	GGTCTC	1 cut(s)	658
BsoBI	CYCGRG	1 cut(s)	655
Bsp119I	TTCGAA	1 cut(s)	1075
Bsp1286I	GDGCHC	3 cut(s)	95, 208, 403
Bsp143I	GATC	4 cut(s)	82, 520, 1043, 1104
Bsp19I	CCATGG	1 cut(s)	717
BspACI	CCGC	2 cut(s)	491, 728
BspCNI	CTCAG	1 cut(s)	448
BspMAI	CTGCAG	3 cut(s)	715, 1064, 1101
BspPI	GGATC	3 cut(s)	515, 1051, 1112
BspQI	GCTCTTC	1 cut(s)	1072
BspT104I	TTCGAA	1 cut(s)	1075
BspTNI	GGTCTC	1 cut(s)	658
BsrFI	RCCGGY	1 cut(s)	471
BsrI	ACTGG	2 cut(s)	285, 921
BssAI	RCCGGY	1 cut(s)	471
BssECI	CCNNGG	1 cut(s)	717
BssMI	GATC	4 cut(s)	82, 520, 1043, 1104
BssNI	GRCGYC	1 cut(s)	38
BssSI	CACGAG	1 cut(s)	402
BssT1I	CCWWGG	1 cut(s)	717
Bst2BI	CACGAG	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	2 cut(s)	559, 1090
Bst6I	CTCTTC	4 cut(s)	17, 389, 528, 1072
BstACI	GRCGYC	1 cut(s)	38
BstAPI	GCANNNNNTGC	1 cut(s)	574
BstBI	TTCGAA	1 cut(s)	1075
BstC8I	GCNNGC	3 cut(s)	109, 353, 952
BstDEI	CTNAG	1 cut(s)	456
BstDSI	CCRYGG	1 cut(s)	717
BstKTI	GATC	4 cut(s)	85, 523, 1046, 1107
BstMAI	GTCTC	3 cut(s)	29, 658, 1062
BstMBI	GATC	4 cut(s)	82, 520, 1043, 1104
BstMWI	GCNNNNNNNGC	8 cut(s)	15, 574, 680, 719, 722, 746, 749, 956
BstNI	CCWGG	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	258
BstSFI	CTRYAG	3 cut(s)	711, 1060, 1097
BstX2I	RGATCY	1 cut(s)	1043
BstYI	RGATCY	1 cut(s)	1043
BtgI	CCRYGG	1 cut(s)	717
Cac8I	GCNNGC	3 cut(s)	109, 353, 952
Cfr10I	RCCGGY	1 cut(s)	471
Csp6I	GTAC	5 cut(s)	73, 337, 372, 475, 631
CspCI	CAANNNNNGTGG	4 cut(s)	840, 875, 1071, 1106
CviAII	CATG	2 cut(s)	718, 940
CviQI	GTAC	5 cut(s)	73, 337, 372, 475, 631
DdeI	CTNAG	1 cut(s)	456
DpnI	GATC	4 cut(s)	84, 522, 1045, 1106
DpnII	GATC	4 cut(s)	82, 520, 1043, 1104
DrdI	GACNNNNNNGTC	1 cut(s)	43
DriI	GACNNNNNGTC	1 cut(s)	130
DseDI	GACNNNNNNGTC	1 cut(s)	43
Eam1104I	CTCTTC	4 cut(s)	17, 389, 528, 1072
Eam1105I	GACNNNNNGTC	1 cut(s)	130
EarI	CTCTTC	4 cut(s)	17, 389, 528, 1072
EciI	GGCGGA	2 cut(s)	506, 717
Ecl136II	GAGCTC	3 cut(s)	93, 206, 401
Eco130I	CCWWGG	1 cut(s)	717
Eco24I	GRGCYC	3 cut(s)	95, 208, 403
Eco31I	GGTCTC	1 cut(s)	658
Eco32I	GATATC	1 cut(s)	1057
Eco53kI	GAGCTC	3 cut(s)	93, 206, 401
Eco57I	CTGAAG	2 cut(s)	413, 552
Eco88I	CYCGRG	1 cut(s)	655
EcoICRI	GAGCTC	3 cut(s)	93, 206, 401
EcoRII	CCWGG	1 cut(s)	258
EcoRV	GATATC	1 cut(s)	1057
EcoT14I	CCWWGG	1 cut(s)	717
EcoT38I	GRGCYC	3 cut(s)	95, 208, 403
ErhI	CCWWGG	1 cut(s)	717
Esp3I	CGTCTC	1 cut(s)	29
FaeI	CATG	2 cut(s)	721, 943
FatI	CATG	2 cut(s)	717, 939
FauNDI	CATATG	1 cut(s)	12
FbaI	TGATCA	1 cut(s)	82
FriOI	GRGCYC	3 cut(s)	95, 208, 403
FspBI	CTAG	1 cut(s)	362
HapII	CCGG	1 cut(s)	472
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	2 cut(s)	721, 943
HinfI	GANTC	4 cut(s)	218, 307, 358, 794
HpaII	CCGG	1 cut(s)	472
HphI	GGTGA	1 cut(s)	530
Hpy166II	GTNNAC	3 cut(s)	75, 477, 562
Hpy188I	TCNGA	4 cut(s)	60, 602, 834, 906
Hpy188III	TCNNGA	6 cut(s)	311, 362, 404, 655, 691, 979
Hpy8I	GTNNAC	3 cut(s)	75, 477, 562
Hpy99I	CGWCG	2 cut(s)	43, 46
HpyAV	CCTTC	5 cut(s)	265, 443, 643, 820, 829
HpyCH4III	ACNGT	2 cut(s)	559, 1090
HpyCH4IV	ACGT	1 cut(s)	38
HpyF10VI	GCNNNNNNNGC	8 cut(s)	15, 574, 680, 719, 722, 746, 749, 956
HpyF3I	CTNAG	1 cut(s)	456
HpySE526I	ACGT	1 cut(s)	38
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	2 cut(s)	721, 943
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	4 cut(s)	82, 520, 1043, 1104
LguI	GCTCTTC	1 cut(s)	1072
LmnI	GCTCC	1 cut(s)	730
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	362
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	2 cut(s)	26, 232
MalI	GATC	4 cut(s)	84, 522, 1045, 1106
MboI	GATC	4 cut(s)	82, 520, 1043, 1104
MfeI	CAATTG	1 cut(s)	413
MflI	RGATCY	1 cut(s)	1043
MhlI	GDGCHC	3 cut(s)	95, 208, 403
MluCI	AATT	9 cut(s)	314, 413, 440, 502, 808, 843, 921, 927, 1037
MlyI	GAGTC	2 cut(s)	352, 788
MmeI	TCCRAC	1 cut(s)	228
MseI	TTAA	2 cut(s)	507, 999
MspI	CCGG	1 cut(s)	472
MspR9I	CCNGG	1 cut(s)	260
MunI	CAATTG	1 cut(s)	413
Mva1269I	GAATGC	2 cut(s)	290, 894
MvaI	CCWGG	1 cut(s)	260
MwoI	GCNNNNNNNGC	8 cut(s)	15, 574, 680, 719, 722, 746, 749, 956
NcoI	CCATGG	1 cut(s)	717
NdeI	CATATG	1 cut(s)	12
NdeII	GATC	4 cut(s)	82, 520, 1043, 1104
NlaIII	CATG	2 cut(s)	721, 943
NmeAIII	GCCGAG	1 cut(s)	1091
NmuCI	GTSAC	1 cut(s)	232
NspV	TTCGAA	1 cut(s)	1075
PaeR7I	CTCGAG	1 cut(s)	655
PciSI	GCTCTTC	1 cut(s)	1072
PctI	GAATGC	2 cut(s)	290, 894
PfeI	GAWTC	2 cut(s)	218, 307
PflFI	GACNNNGTC	1 cut(s)	40
PleI	GAGTC	2 cut(s)	352, 788
PpsI	GAGTC	2 cut(s)	352, 788
Psp124BI	GAGCTC	3 cut(s)	95, 208, 403
Psp6I	CCWGG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	258
PstI	CTGCAG	3 cut(s)	715, 1064, 1101
PsuI	RGATCY	1 cut(s)	1043
PsyI	GACNNNGTC	1 cut(s)	40
RsaI	GTAC	5 cut(s)	74, 338, 373, 476, 632
RsaNI	GTAC	5 cut(s)	73, 337, 372, 475, 631
SacI	GAGCTC	3 cut(s)	95, 208, 403
SapI	GCTCTTC	1 cut(s)	1072
SaqAI	TTAA	2 cut(s)	507, 999
Sau3AI	GATC	4 cut(s)	82, 520, 1043, 1104
ScaI	AGTACT	1 cut(s)	338
SchI	GAGTC	2 cut(s)	352, 788
ScrFI	CCNGG	1 cut(s)	260
SduI	GDGCHC	3 cut(s)	95, 208, 403
SfaNI	GCATC	1 cut(s)	109
SfcI	CTRYAG	3 cut(s)	711, 1060, 1097
Sfr274I	CTCGAG	1 cut(s)	655
SfuI	TTCGAA	1 cut(s)	1075
SlaI	CTCGAG	1 cut(s)	655
SmlI	CTYRAG	4 cut(s)	584, 626, 655, 1047
SmoI	CTYRAG	4 cut(s)	584, 626, 655, 1047
Sse9I	AATT	9 cut(s)	314, 413, 440, 502, 808, 843, 921, 927, 1037
SsiI	CCGC	2 cut(s)	491, 728
SspMI	CTAG	1 cut(s)	362
SstI	GAGCTC	3 cut(s)	95, 208, 403
StyD4I	CCNGG	1 cut(s)	258
StyI	CCWWGG	1 cut(s)	717
TaaI	ACNGT	2 cut(s)	559, 1090
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	7 cut(s)	202, 216, 321, 444, 656, 898, 1075
TaqII	GACCGA	1 cut(s)	927
TasI	AATT	9 cut(s)	314, 413, 440, 502, 808, 843, 921, 927, 1037
TatI	WGTACW	4 cut(s)	72, 336, 371, 630
TfiI	GAWTC	2 cut(s)	218, 307
Tru1I	TTAA	2 cut(s)	507, 999
Tru9I	TTAA	2 cut(s)	507, 999
TseFI	GTSAC	1 cut(s)	232
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	4 cut(s)	269, 828, 839, 1037
Tth111I	GACNNNGTC	1 cut(s)	40
XapI	RAATTY	2 cut(s)	502, 927
XbaI	TCTAGA	1 cut(s)	361
XcmI	CCANNNNNNNNNTGG	2 cut(s)	775, 883
XhoI	CTCGAG	1 cut(s)	655
XspI	CTAG	1 cut(s)	362
ZraI	GACGTC	1 cut(s)	39
ZrmI	AGTACT	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.