Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010428

Physical Location & Seq

Genomic Coordinates Reverse (-)

17758856 .. 17761076

Gene Structure 2221 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23583

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGGAAGCCATATGAGCAAGAGGACTGCCACTGAGACATCGTCGTCTGCTATAAATCTGACCACTTTTCAGTACACAACTGATCAGTTGAGCTCATATGAGGCTGCTTGCAAGGTTGATGCTGACTTGCAGTCGTTTGATACCAACCTCCAAAACCGAACCAATCAAGTTATCACCACTCTTGCAGCAGGAGTTGAAGTTCGAGCTCTGTCGTTCGATTCCTTGAAACAAGTGACGGAATGTTTATTGGAGATGAACCAGGAGGTTGTCAAGGTAATATTGGAATGCAAGAAAGACATTTGGAAGAATCAGGAATTGTTTGAGCTGGTCGAGGAGTACTTTGAGAATAGCTTGCAGACTCTGGACTTTTGTACTGCATTGGAGAAGTGCCTGAAGCGAGCTCGTGATAGTCAACTGCTCATTCTTGTTGCCCTTCAACAATTCGAGGAGGAAACTGAGGTGGGAGGCAGTCGGTACACAAGGACAATGGAGGAGTTGAAGAATTTTAAGACTGCTGGTGACCCTTTTACTGAAGAGTTCTTCCAAATGTTTCATACTGTTTACAGGCAGCAAATACAGATGCTTGAGAAGTTGCATCTTCAAAAGAACAAGCTGGATAAGAAGCTCAAGTACATCAATGCTTGGAGGAAGGTCTCGAGTATCATATTTGTTGCCACTTTTGCTGCAGTCTTGATTTGTTCGGTTGTGGCAGCAGCCATGGCTGCTCCGCCTGTCGCAGCAGCTCTGGCTGCTGCGACTTCTATCCCCGTTGGTTCAATGGGAAAATGGATTGACTCTTTGTGGAAGAATTATCAAAGTGCTATGAAGGGTCAGAAGGAAGTAATTAGCTCAATGCAAGTGGGTACTTATGTTGCCATCAAGGACTTGGACAGCATTCGAGTTCTGATTGACCGATTGGAAATTGAAATTCAGTCGCTCATGGATAATGCAAGCTTTGCTATTGAGCAAGAAGCAGTTAGGATTGCAATAGAGGAGATTAAGAAGAAGTTGGGAGTATTTATGAAGAATGTTGAGGAATTGGGATCTCAAGCTGATATGTGCAGCCGAGACATTCGAAGAGCAAGGACTGTGGTTCTGCAGAGGATTATCAAGCATACCAACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

375

Amino Acids

42.45

Weight (kDa)

5.98

Isoelectric Point (pI)

46.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ROH1-like	PF05633	21 - 163	8.8e-09	Protein ROH1-like
DUF677	PF05055	43 - 369	2.3e-135	Protein of unknown function (DUF677)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34320 AT4G34320
fragaria_vesca	FvH4_2g08180 FvH4_2g08180
malus_domestica	MD05G1070600.v1.1 MD10G1081600.v1.1
prunus_persica	Prupe.8G103100_v2.0.a1 Prupe.8G103100_v2.0.a1 Prupe.8G103100_v2.0.a1
pyrus_communis	pycom10g06450
rosa_chinensis	RchiOBHm_Chr6g0262961
rosa_laevigata	RLG00000014389
rosa_multiflora	Rmu_sc0006493.1_g000001
rosa_roxburghii	Rroxscaffold_7G00204820
rosa_rugosa	Rorug06G0002500 Rorug06G0002600
rosa_samantha	Rh6AG121300 Rh6BG114900 Rh6CG113300 Rh6DG102600
rosa_wichuraiana	Rw6G010410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	43
AciI	CCGC	1 cut(s)	728
AclWI	GGATC	1 cut(s)	1051
AcsI	RAATTY	2 cut(s)	502, 927
AcuI	CTGAAG	2 cut(s)	413, 552
AfaI	GTAC	6 cut(s)	74, 338, 373, 476, 632, 865
AgsI	TTSAA	7 cut(s)	197, 226, 437, 499, 602, 777, 926
AhdI	GACNNNNNGTC	1 cut(s)	130
AjnI	CCWGG	1 cut(s)	258
AloI	GAACNNNNNNTCC	2 cut(s)	183, 215
Alw21I	GWGCWC	3 cut(s)	95, 208, 403
Alw26I	GTCTC	3 cut(s)	29, 658, 1062
AlwI	GGATC	1 cut(s)	1051
AlwNI	CAGNNNCTG	1 cut(s)	361
Ama87I	CYCGRG	1 cut(s)	655
ApoI	RAATTY	2 cut(s)	502, 927
AsuHPI	GGTGA	2 cut(s)	166, 530
AsuII	TTCGAA	1 cut(s)	1075
AvaI	CYCGRG	1 cut(s)	655
BaeI	ACNNNNGTAYC	2 cut(s)	855, 888
BanII	GRGCYC	3 cut(s)	95, 208, 403
BarI	GAAGNNNNNNTAC	2 cut(s)	614, 646
BauI	CACGAG	1 cut(s)	402
Bbv12I	GWGCWC	3 cut(s)	95, 208, 403
BccI	CCATC	1 cut(s)	884
BciT130I	CCWGG	1 cut(s)	260
BclI	TGATCA	1 cut(s)	82
BcoDI	GTCTC	3 cut(s)	29, 658, 1062
BfmI	CTRYAG	2 cut(s)	684, 1097
BmcAI	AGTACT	1 cut(s)	338
Bme1390I	CCNGG	1 cut(s)	260
BmeRI	GACNNNNNGTC	1 cut(s)	130
BmeT110I	CYCGRG	1 cut(s)	655
BmrFI	CCNGG	1 cut(s)	260
BmsI	GCATC	3 cut(s)	109, 570, 604
Bpu14I	TTCGAA	1 cut(s)	1075
BpuEI	CTTGAG	3 cut(s)	605, 611, 1032
BsaI	GGTCTC	1 cut(s)	658
BsaJI	CCNNGG	1 cut(s)	717
BsaXI	ACNNNNNCTCC	2 cut(s)	183, 213
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	717
BseMII	CTCAG	2 cut(s)	24, 447
BseRI	GAGGAG	4 cut(s)	347, 461, 506, 1007
BsgI	GTGCAG	1 cut(s)	1081
BsiHKAI	GWGCWC	3 cut(s)	95, 208, 403
BsiHKCI	CYCGRG	1 cut(s)	655
BsmAI	GTCTC	3 cut(s)	29, 658, 1062
BsmI	GAATGC	2 cut(s)	290, 894
Bso31I	GGTCTC	1 cut(s)	658
BsoBI	CYCGRG	1 cut(s)	655
Bsp119I	TTCGAA	1 cut(s)	1075
Bsp1286I	GDGCHC	3 cut(s)	95, 208, 403
Bsp143I	GATC	2 cut(s)	82, 1043
Bsp19I	CCATGG	1 cut(s)	717
BspACI	CCGC	1 cut(s)	728
BspCNI	CTCAG	2 cut(s)	25, 448
BspMAI	CTGCAG	2 cut(s)	688, 1101
BspPI	GGATC	1 cut(s)	1051
BspQI	GCTCTTC	1 cut(s)	1072
BspT104I	TTCGAA	1 cut(s)	1075
BspTNI	GGTCTC	1 cut(s)	658
BssECI	CCNNGG	1 cut(s)	717
BssMI	GATC	2 cut(s)	82, 1043
BssSI	CACGAG	1 cut(s)	402
BssT1I	CCWWGG	1 cut(s)	717
Bst2BI	CACGAG	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	2 cut(s)	559, 1090
Bst6I	CTCTTC	2 cut(s)	528, 1072
BstAPI	GCANNNNNTGC	1 cut(s)	956
BstBI	TTCGAA	1 cut(s)	1075
BstC8I	GCNNGC	4 cut(s)	109, 353, 399, 952
BstDEI	CTNAG	2 cut(s)	33, 456
BstDSI	CCRYGG	1 cut(s)	717
BstEII	GGTNACC	1 cut(s)	518
BstKTI	GATC	2 cut(s)	85, 1046
BstMAI	GTCTC	3 cut(s)	29, 658, 1062
BstMBI	GATC	2 cut(s)	82, 1043
BstMWI	GCNNNNNNNGC	7 cut(s)	15, 680, 719, 722, 746, 749, 956
BstNI	CCWGG	1 cut(s)	260
BstPI	GGTNACC	1 cut(s)	518
BstSCI	CCNGG	1 cut(s)	258
BstSFI	CTRYAG	2 cut(s)	684, 1097
BstX2I	RGATCY	1 cut(s)	1043
BstYI	RGATCY	1 cut(s)	1043
BtgI	CCRYGG	1 cut(s)	717
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	4 cut(s)	109, 353, 399, 952
CaiI	CAGNNNCTG	1 cut(s)	361
Csp6I	GTAC	6 cut(s)	73, 337, 372, 475, 631, 864
CspCI	CAANNNNNGTGG	4 cut(s)	840, 875, 1071, 1106
CviAII	CATG	2 cut(s)	718, 940
CviQI	GTAC	6 cut(s)	73, 337, 372, 475, 631, 864
DdeI	CTNAG	2 cut(s)	33, 456
DpnI	GATC	2 cut(s)	84, 1045
DpnII	GATC	2 cut(s)	82, 1043
DrdI	GACNNNNNNGTC	1 cut(s)	43
DriI	GACNNNNNGTC	1 cut(s)	130
DseDI	GACNNNNNNGTC	1 cut(s)	43
Eam1104I	CTCTTC	2 cut(s)	528, 1072
Eam1105I	GACNNNNNGTC	1 cut(s)	130
EarI	CTCTTC	2 cut(s)	528, 1072
EciI	GGCGGA	1 cut(s)	717
Ecl136II	GAGCTC	3 cut(s)	93, 206, 401
Eco130I	CCWWGG	1 cut(s)	717
Eco24I	GRGCYC	3 cut(s)	95, 208, 403
Eco31I	GGTCTC	1 cut(s)	658
Eco53kI	GAGCTC	3 cut(s)	93, 206, 401
Eco57I	CTGAAG	2 cut(s)	413, 552
Eco88I	CYCGRG	1 cut(s)	655
Eco91I	GGTNACC	1 cut(s)	518
EcoICRI	GAGCTC	3 cut(s)	93, 206, 401
EcoO65I	GGTNACC	1 cut(s)	518
EcoRII	CCWGG	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	717
EcoT38I	GRGCYC	3 cut(s)	95, 208, 403
ErhI	CCWWGG	1 cut(s)	717
FaeI	CATG	2 cut(s)	721, 943
FatI	CATG	2 cut(s)	717, 939
FauNDI	CATATG	2 cut(s)	12, 97
FbaI	TGATCA	1 cut(s)	82
FriOI	GRGCYC	3 cut(s)	95, 208, 403
Hin1II	CATG	2 cut(s)	721, 943
HincII	GTYRAC	1 cut(s)	413
HindII	GTYRAC	1 cut(s)	413
HindIII	AAGCTT	1 cut(s)	952
HinfI	GANTC	4 cut(s)	218, 307, 358, 794
HphI	GGTGA	2 cut(s)	166, 530
Hpy166II	GTNNAC	4 cut(s)	75, 413, 477, 562
Hpy188I	TCNGA	3 cut(s)	60, 834, 906
Hpy188III	TCNNGA	5 cut(s)	311, 362, 404, 655, 691
Hpy8I	GTNNAC	4 cut(s)	75, 413, 477, 562
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	4 cut(s)	443, 643, 820, 829
HpyCH4III	ACNGT	2 cut(s)	559, 1090
HpyF10VI	GCNNNNNNNGC	7 cut(s)	15, 680, 719, 722, 746, 749, 956
HpyF3I	CTNAG	2 cut(s)	33, 456
Hsp92II	CATG	2 cut(s)	721, 943
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	2 cut(s)	82, 1043
LguI	GCTCTTC	1 cut(s)	1072
LmnI	GCTCC	1 cut(s)	730
LweI	GCATC	3 cut(s)	109, 570, 604
MaeIII	GTNAC	2 cut(s)	232, 518
MalI	GATC	2 cut(s)	84, 1045
MboI	GATC	2 cut(s)	82, 1043
MboII	GAAGA	9 cut(s)	316, 511, 532, 545, 590, 817, 1015, 1036, 1089
MflI	RGATCY	1 cut(s)	1043
MhlI	GDGCHC	3 cut(s)	95, 208, 403
MluCI	AATT	8 cut(s)	314, 440, 502, 808, 843, 921, 927, 1037
MlyI	GAGTC	2 cut(s)	352, 788
MseI	TTAA	2 cut(s)	507, 999
MspR9I	CCNGG	1 cut(s)	260
Mva1269I	GAATGC	2 cut(s)	290, 894
MvaI	CCWGG	1 cut(s)	260
MwoI	GCNNNNNNNGC	7 cut(s)	15, 680, 719, 722, 746, 749, 956
NcoI	CCATGG	1 cut(s)	717
NdeI	CATATG	2 cut(s)	12, 97
NdeII	GATC	2 cut(s)	82, 1043
NlaIII	CATG	2 cut(s)	721, 943
NmeAIII	GCCGAG	1 cut(s)	1091
NmuCI	GTSAC	2 cut(s)	232, 518
NspV	TTCGAA	1 cut(s)	1075
PaeR7I	CTCGAG	1 cut(s)	655
PciSI	GCTCTTC	1 cut(s)	1072
PctI	GAATGC	2 cut(s)	290, 894
PfeI	GAWTC	2 cut(s)	218, 307
PflFI	GACNNNGTC	1 cut(s)	40
PleI	GAGTC	2 cut(s)	352, 788
PpsI	GAGTC	2 cut(s)	352, 788
Psp124BI	GAGCTC	3 cut(s)	95, 208, 403
Psp6I	CCWGG	1 cut(s)	258
PspEI	GGTNACC	1 cut(s)	518
PspGI	CCWGG	1 cut(s)	258
PstI	CTGCAG	2 cut(s)	688, 1101
PstNI	CAGNNNCTG	1 cut(s)	361
PsuI	RGATCY	1 cut(s)	1043
PsyI	GACNNNGTC	1 cut(s)	40
RsaI	GTAC	6 cut(s)	74, 338, 373, 476, 632, 865
RsaNI	GTAC	6 cut(s)	73, 337, 372, 475, 631, 864
SacI	GAGCTC	3 cut(s)	95, 208, 403
SapI	GCTCTTC	1 cut(s)	1072
SaqAI	TTAA	2 cut(s)	507, 999
Sau3AI	GATC	2 cut(s)	82, 1043
ScaI	AGTACT	1 cut(s)	338
SchI	GAGTC	2 cut(s)	352, 788
ScrFI	CCNGG	1 cut(s)	260
SduI	GDGCHC	3 cut(s)	95, 208, 403
SfaNI	GCATC	3 cut(s)	109, 570, 604
SfcI	CTRYAG	2 cut(s)	684, 1097
Sfr274I	CTCGAG	1 cut(s)	655
SfuI	TTCGAA	1 cut(s)	1075
SlaI	CTCGAG	1 cut(s)	655
SmlI	CTYRAG	4 cut(s)	584, 626, 655, 1047
SmoI	CTYRAG	4 cut(s)	584, 626, 655, 1047
Sse9I	AATT	8 cut(s)	314, 440, 502, 808, 843, 921, 927, 1037
SsiI	CCGC	1 cut(s)	728
SspI	AATATT	1 cut(s)	279
SstI	GAGCTC	3 cut(s)	95, 208, 403
StyD4I	CCNGG	1 cut(s)	258
StyI	CCWWGG	1 cut(s)	717
TaaI	ACNGT	2 cut(s)	559, 1090
TaqI	TCGA	7 cut(s)	202, 216, 330, 444, 656, 898, 1075
TaqII	GACCGA	1 cut(s)	927
TasI	AATT	8 cut(s)	314, 440, 502, 808, 843, 921, 927, 1037
TatI	WGTACW	4 cut(s)	72, 336, 371, 630
TfiI	GAWTC	2 cut(s)	218, 307
Tru1I	TTAA	2 cut(s)	507, 999
Tru9I	TTAA	2 cut(s)	507, 999
TscAI	CASTG	1 cut(s)	37
TseFI	GTSAC	2 cut(s)	232, 518
Tsp45I	GTSAC	2 cut(s)	232, 518
TspDTI	ATGAA	4 cut(s)	269, 542, 839, 1037
TspGWI	ACGGA	1 cut(s)	251
TspRI	CASTG	1 cut(s)	37
Tth111I	GACNNNGTC	1 cut(s)	40
XapI	RAATTY	2 cut(s)	502, 927
XcmI	CCANNNNNNNNNTGG	1 cut(s)	883
XhoI	CTCGAG	1 cut(s)	655
ZrmI	AGTACT	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.