Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0010428

Physical Location & Seq

Genomic Coordinates Forward (+)

13711944 .. 13713071

Gene Structure 1128 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1070600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGGAAGCCATATGAGCAAGAAGAGCGCTGAAACATCATCCTCTGCAACCAATCTTCATACAAATTTGCAGTACACAACTGATCAATTGAGTTCTTACGAGGCAGCTTGCAAGCTCGATGCAGATTTGCAGTCCTTCGACACGAATCTCCAAACCCGAACCAATCATGTCATCAGCACAATCGCGGCAGGAGTCGAAGTCCGAGCCCTCTCGTTGGATTCGCTGAAGGAGGTGACAGGATGCCTGTTGGAGATGAATCAGGAAGTTGTGAAAGTTATCTTGGAGTGCAAGAAAGACATATGGAAAAATCAGGAGTTGTTCGAGCTCGTTGATGAGTATTTTGAGAACAGCTTGCAGACTTTGGATTTCTGTACTGCGTTGGAGAAGTGCTTGAAGCGAGCTCGCGATAGCCAGTTGCTTATTCTCGTAGCGCTTCAGCGATTCGAGGAAGAAACCGAAATGGGAGGCGGTCAATACACAAGGACTTTGGAGGAGTTGAAGAATTTCAAGGCGATAGGTGATCCCTTTACTGAAGAGTTCTTTCAGATATTTCAATCTATTTATAAGCAGCAAATACTAATGCTCGAGAAGTTGCAAATGCGAAAGAACAAGCTCGATAAGAAGCTCAAATGTATTAATGCTTGGAGGAAGGTCACGGGTATGATATTTGTTGCTACATTTGCTGCTGTGTTGATTTGTTCTGTTGTGGCGGCAGCCATGGCTGCTCCGCCGGTTGCAGCAGCTCTAGCTGCAGCTAGTTCTATCCCAGTAGGCTCAATGGGGAATTGGATTGACTCTTTGTGGAAAAACTATGAAAATGCTTTGAGGGGTCAAAAGGAAGTGATTAGTTCAATGCAAGTAGGAACTTATGTTGCCATTAAGGACTTGGACAACATTCGGGTTCTCATTGATCGATTGGAAATTGATATCGAGTCCCTCTTGCACAATGCAAGCTTTGCCATTGACGAAGAAGCTGTGAAAGTTGCGATAGAGGAGATTAAGAAGAAGTTGGGAGTATTTATGAAGAATGTAGAGGATTTGGGAACTGAAGCTGATATCTGCAGCCGTGACATTCGAAGAGCAAGGACTGTGGTTCTGCAGAGGATCATCAAACATTCCAACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

376

Amino Acids

42.13

Weight (kDa)

5.61

Isoelectric Point (pI)

41.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ROH1-like	PF05633	28 - 167	1.7e-09	Protein ROH1-like
DUF677	PF05055	43 - 369	7e-137	Protein of unknown function (DUF677)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34320 AT4G34320
fragaria_vesca	FvH4_2g08180 FvH4_2g08180
malus_domestica	MD05G1070600.v1.1 MD10G1081600.v1.1
prunus_persica	Prupe.8G103100_v2.0.a1 Prupe.8G103100_v2.0.a1 Prupe.8G103100_v2.0.a1
pyrus_communis	pycom10g06450
rosa_chinensis	RchiOBHm_Chr6g0262961
rosa_laevigata	RLG00000014389
rosa_multiflora	Rmu_sc0006493.1_g000001
rosa_roxburghii	Rroxscaffold_7G00204820
rosa_rugosa	Rorug06G0002500 Rorug06G0002600
rosa_samantha	Rh6AG121300 Rh6BG114900 Rh6CG113300 Rh6DG102600
rosa_wichuraiana	Rw6G010410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	564
AccII	CGCG	2 cut(s)	185, 405
AciI	CCGC	4 cut(s)	185, 468, 710, 728
AclWI	GGATC	2 cut(s)	515, 1112
AcsI	RAATTY	2 cut(s)	64, 502
AcuI	CTGAAG	4 cut(s)	245, 419, 552, 1068
AfaI	GTAC	2 cut(s)	74, 373
AfeI	AGCGCT	2 cut(s)	28, 432
AfiI	CCNNNNNNNGG	1 cut(s)	214
AgsI	TTSAA	5 cut(s)	394, 499, 508, 554, 852
AjuI	GAANNNNNNNTTGG	2 cut(s)	263, 295
Alw21I	GWGCWC	2 cut(s)	327, 403
AlwI	GGATC	2 cut(s)	515, 1112
Ama87I	CYCGRG	1 cut(s)	584
Aor51HI	AGCGCT	2 cut(s)	28, 432
ApoI	RAATTY	2 cut(s)	64, 502
AseI	ATTAAT	1 cut(s)	636
Asp700I	GAANNNNTTC	1 cut(s)	503
AspLEI	GCGC	2 cut(s)	29, 433
AsuHPI	GGTGA	2 cut(s)	244, 530
AsuII	TTCGAA	1 cut(s)	1075
AvaI	CYCGRG	1 cut(s)	584
BanII	GRGCYC	3 cut(s)	208, 327, 403
Bbv12I	GWGCWC	2 cut(s)	327, 403
BceAI	ACGGC	1 cut(s)	1050
BclI	TGATCA	1 cut(s)	82
BfaI	CTAG	2 cut(s)	746, 756
BfmI	CTRYAG	3 cut(s)	750, 1060, 1097
BfoI	RGCGCY	2 cut(s)	30, 434
BmeT110I	CYCGRG	1 cut(s)	584
BmrI	ACTGGG	1 cut(s)	761
BmsI	GCATC	2 cut(s)	109, 230
BmuI	ACTGGG	1 cut(s)	761
Bpu14I	TTCGAA	1 cut(s)	1075
Bsa29I	ATCGAT	1 cut(s)	913
BsaJI	CCNNGG	1 cut(s)	717
BsaXI	ACNNNNNCTCC	2 cut(s)	183, 213
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse118I	RCCGGY	1 cut(s)	730
Bse1I	ACTGG	2 cut(s)	412, 767
BseCI	ATCGAT	1 cut(s)	913
BseDI	CCNNGG	1 cut(s)	717
BseGI	GGATG	2 cut(s)	38, 245
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseNI	ACTGG	2 cut(s)	412, 767
BseRI	GAGGAG	2 cut(s)	506, 1007
Bsh1236I	CGCG	2 cut(s)	185, 405
BshVI	ATCGAT	1 cut(s)	913
BsiHKAI	GWGCWC	2 cut(s)	327, 403
BsiHKCI	CYCGRG	1 cut(s)	584
BsiSI	CCGG	1 cut(s)	731
BslFI	GGGAC	1 cut(s)	919
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmFI	GGGAC	1 cut(s)	919
BsoBI	CYCGRG	1 cut(s)	584
Bsp119I	TTCGAA	1 cut(s)	1075
Bsp1286I	GDGCHC	3 cut(s)	208, 327, 403
Bsp143I	GATC	4 cut(s)	82, 520, 910, 1104
Bsp19I	CCATGG	1 cut(s)	717
Bsp68I	TCGCGA	1 cut(s)	405
BspACI	CCGC	4 cut(s)	185, 468, 710, 728
BspDI	ATCGAT	1 cut(s)	913
BspFNI	CGCG	2 cut(s)	185, 405
BspMAI	CTGCAG	3 cut(s)	754, 1064, 1101
BspPI	GGATC	2 cut(s)	515, 1112
BspQI	GCTCTTC	2 cut(s)	17, 1072
BspT104I	TTCGAA	1 cut(s)	1075
BsrFI	RCCGGY	1 cut(s)	730
BsrI	ACTGG	2 cut(s)	412, 767
BssAI	RCCGGY	1 cut(s)	730
BssECI	CCNNGG	1 cut(s)	717
BssMI	GATC	4 cut(s)	82, 520, 910, 1104
BssT1I	CCWWGG	1 cut(s)	717
Bst4CI	ACNGT	1 cut(s)	1090
Bst6I	CTCTTC	3 cut(s)	17, 528, 1072
BstAPI	GCANNNNNTGC	1 cut(s)	956
BstBI	TTCGAA	1 cut(s)	1075
BstC8I	GCNNGC	6 cut(s)	109, 113, 353, 399, 403, 952
BstDSI	CCRYGG	1 cut(s)	717
BstF5I	GGATG	2 cut(s)	38, 245
BstFNI	CGCG	2 cut(s)	185, 405
BstH2I	RGCGCY	2 cut(s)	30, 434
BstHHI	GCGC	2 cut(s)	29, 433
BstKTI	GATC	4 cut(s)	85, 523, 913, 1107
BstMBI	GATC	4 cut(s)	82, 520, 910, 1104
BstMWI	GCNNNNNNNGC	8 cut(s)	15, 24, 680, 719, 722, 746, 749, 956
BstSFI	CTRYAG	3 cut(s)	750, 1060, 1097
BstUI	CGCG	2 cut(s)	185, 405
Bsu15I	ATCGAT	1 cut(s)	913
BsuTUI	ATCGAT	1 cut(s)	913
BtgI	CCRYGG	1 cut(s)	717
BtsCI	GGATG	2 cut(s)	38, 245
BtuMI	TCGCGA	1 cut(s)	405
Cac8I	GCNNGC	6 cut(s)	109, 113, 353, 399, 403, 952
CfoI	GCGC	2 cut(s)	29, 433
Cfr10I	RCCGGY	1 cut(s)	730
ClaI	ATCGAT	1 cut(s)	913
Csp6I	GTAC	2 cut(s)	73, 372
CspCI	CAANNNNNGTGG	2 cut(s)	1071, 1106
CviAII	CATG	2 cut(s)	167, 718
CviQI	GTAC	2 cut(s)	73, 372
DpnI	GATC	4 cut(s)	84, 522, 912, 1106
DpnII	GATC	4 cut(s)	82, 520, 910, 1104
Eam1104I	CTCTTC	3 cut(s)	17, 528, 1072
EarI	CTCTTC	3 cut(s)	17, 528, 1072
EciI	GGCGGA	1 cut(s)	717
Ecl136II	GAGCTC	2 cut(s)	325, 401
Eco130I	CCWWGG	1 cut(s)	717
Eco24I	GRGCYC	3 cut(s)	208, 327, 403
Eco32I	GATATC	2 cut(s)	928, 1057
Eco47III	AGCGCT	2 cut(s)	28, 432
Eco53kI	GAGCTC	2 cut(s)	325, 401
Eco57I	CTGAAG	4 cut(s)	245, 419, 552, 1068
Eco88I	CYCGRG	1 cut(s)	584
EcoICRI	GAGCTC	2 cut(s)	325, 401
EcoRV	GATATC	2 cut(s)	928, 1057
EcoT14I	CCWWGG	1 cut(s)	717
EcoT38I	GRGCYC	3 cut(s)	208, 327, 403
ErhI	CCWWGG	1 cut(s)	717
FaeI	CATG	2 cut(s)	170, 721
FaqI	GGGAC	1 cut(s)	919
FatI	CATG	2 cut(s)	166, 717
FauNDI	CATATG	2 cut(s)	12, 299
FbaI	TGATCA	1 cut(s)	82
FokI	GGATG	2 cut(s)	25, 252
FriOI	GRGCYC	3 cut(s)	208, 327, 403
FspBI	CTAG	2 cut(s)	746, 756
GlaI	GCGC	2 cut(s)	28, 432
HaeII	RGCGCY	2 cut(s)	30, 434
HapII	CCGG	1 cut(s)	731
HhaI	GCGC	2 cut(s)	29, 433
Hin1II	CATG	2 cut(s)	170, 721
Hin6I	GCGC	2 cut(s)	27, 431
HinP1I	GCGC	2 cut(s)	27, 431
HindIII	AAGCTT	1 cut(s)	952
HinfI	GANTC	7 cut(s)	145, 192, 218, 256, 441, 794, 932
HpaII	CCGG	1 cut(s)	731
HphI	GGTGA	2 cut(s)	244, 530
Hpy166II	GTNNAC	1 cut(s)	75
Hpy188I	TCNGA	2 cut(s)	203, 546
Hpy188III	TCNNGA	4 cut(s)	260, 311, 404, 586
Hpy8I	GTNNAC	1 cut(s)	75
HpyAV	CCTTC	3 cut(s)	145, 220, 643
HpyCH4III	ACNGT	1 cut(s)	1090
HpyF10VI	GCNNNNNNNGC	8 cut(s)	15, 24, 680, 719, 722, 746, 749, 956
Hsp92II	CATG	2 cut(s)	170, 721
HspAI	GCGC	2 cut(s)	27, 431
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	4 cut(s)	82, 520, 910, 1104
LguI	GCTCTTC	2 cut(s)	17, 1072
LmnI	GCTCC	1 cut(s)	730
LpnPI	CCDG	8 cut(s)	174, 222, 245, 257, 296, 425, 744, 780
LweI	GCATC	2 cut(s)	109, 230
MaeI	CTAG	2 cut(s)	746, 756
MaeIII	GTNAC	3 cut(s)	232, 652, 1067
MalI	GATC	4 cut(s)	84, 522, 912, 1106
MboI	GATC	4 cut(s)	82, 520, 910, 1104
MboII	GAAGA	9 cut(s)	34, 47, 461, 511, 545, 980, 1015, 1036, 1089
MfeI	CAATTG	1 cut(s)	86
MhlI	GDGCHC	3 cut(s)	208, 327, 403
MluCI	AATT	5 cut(s)	64, 86, 502, 784, 921
MlyI	GAGTC	3 cut(s)	201, 788, 941
MmeI	TCCRAC	3 cut(s)	195, 228, 360
MroXI	GAANNNNTTC	1 cut(s)	503
MseI	TTAA	3 cut(s)	636, 879, 999
MslI	CAYNNNNRTG	1 cut(s)	659
MspI	CCGG	1 cut(s)	731
MunI	CAATTG	1 cut(s)	86
MvnI	CGCG	2 cut(s)	185, 405
MwoI	GCNNNNNNNGC	8 cut(s)	15, 24, 680, 719, 722, 746, 749, 956
NcoI	CCATGG	1 cut(s)	717
NdeI	CATATG	2 cut(s)	12, 299
NdeII	GATC	4 cut(s)	82, 520, 910, 1104
NlaIII	CATG	2 cut(s)	170, 721
NmuCI	GTSAC	3 cut(s)	232, 652, 1067
NruI	TCGCGA	1 cut(s)	405
NspV	TTCGAA	1 cut(s)	1075
PaeR7I	CTCGAG	1 cut(s)	584
PciSI	GCTCTTC	2 cut(s)	17, 1072
PdmI	GAANNNNTTC	1 cut(s)	503
PfeI	GAWTC	4 cut(s)	145, 218, 256, 441
PleI	GAGTC	3 cut(s)	200, 788, 940
PpsI	GAGTC	3 cut(s)	200, 788, 940
PshBI	ATTAAT	1 cut(s)	636
PsiI	TTATAA	1 cut(s)	564
Psp124BI	GAGCTC	2 cut(s)	327, 403
PstI	CTGCAG	3 cut(s)	754, 1064, 1101
RruI	TCGCGA	1 cut(s)	405
RsaI	GTAC	2 cut(s)	74, 373
RsaNI	GTAC	2 cut(s)	73, 372
RseI	CAYNNNNRTG	1 cut(s)	659
SacI	GAGCTC	2 cut(s)	327, 403
SapI	GCTCTTC	2 cut(s)	17, 1072
SaqAI	TTAA	3 cut(s)	636, 879, 999
Sau3AI	GATC	4 cut(s)	82, 520, 910, 1104
SchI	GAGTC	3 cut(s)	201, 788, 941
SduI	GDGCHC	3 cut(s)	208, 327, 403
SfaNI	GCATC	2 cut(s)	109, 230
SfcI	CTRYAG	3 cut(s)	750, 1060, 1097
Sfr274I	CTCGAG	1 cut(s)	584
SfuI	TTCGAA	1 cut(s)	1075
SlaI	CTCGAG	1 cut(s)	584
SmiMI	CAYNNNNRTG	1 cut(s)	659
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	5 cut(s)	64, 86, 502, 784, 921
SsiI	CCGC	4 cut(s)	185, 468, 710, 728
SspMI	CTAG	2 cut(s)	746, 756
SstI	GAGCTC	2 cut(s)	327, 403
StyI	CCWWGG	1 cut(s)	717
TaaI	ACNGT	1 cut(s)	1090
TasI	AATT	5 cut(s)	64, 86, 502, 784, 921
TatI	WGTACW	2 cut(s)	72, 371
TauI	GCSGC	2 cut(s)	188, 713
TfiI	GAWTC	4 cut(s)	145, 218, 256, 441
Tru1I	TTAA	3 cut(s)	636, 879, 999
Tru9I	TTAA	3 cut(s)	636, 879, 999
TseFI	GTSAC	3 cut(s)	232, 652, 1067
Tsp45I	GTSAC	3 cut(s)	232, 652, 1067
TspDTI	ATGAA	4 cut(s)	47, 269, 828, 1037
VspI	ATTAAT	1 cut(s)	636
XapI	RAATTY	2 cut(s)	64, 502
XcmI	CCANNNNNNNNNTGG	1 cut(s)	883
XhoI	CTCGAG	1 cut(s)	584
XmnI	GAANNNNTTC	1 cut(s)	503
XspI	CTAG	2 cut(s)	746, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.