Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010428

Physical Location & Seq

Genomic Coordinates Forward (+)

13424776 .. 13428025

Gene Structure 3250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G103100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGGAAGCCATATGAGCAAGAAGAGCTCTGAAACATCATCCTCTGCTATCAATCTCAACACCAATTTACAATACACAACTGATCAATTAAGCTCATATGAGGCAGCCTGCAAGGTTGATGCAGAATTGCAATCCTTTGATACCAATCTCCAAACCAGAACCAATCAAGTCATCAACACAATTGCAGCAGGAGTTGAAGTTCGAGCTCTCTCATTTGATTCATTGAAGGAAATCACAGAATGCCTGTTGGAGATGAACCAGGAGGTTGTGAAAGTTATCTTGGAGTGCAAGAAGGATATATGGAAAAATCAAGAATTGTTTGAGCTTGTAGAGGAGTACTTTGAAAACAGCTTGCAGACTTTAGATTTCTGTACTGCATTGGAGAAGTGTTTGAAGCGAGCTCGTGATAGCCAATTGCTCATTCTTGTTGCTCTTCAACAGTTTGAGGAGGAAACCGAAATGGGAGGCAGTCGATACACGAGGACTTTGGGCGAATTGAAGAATTTTAAGGCTATAGGTGATCCTTTTACTGAAGAGTTCTTCCAAATTTTTCAATCTGTTTACAGGCAACAAATACAAATGCTTGAGAAGTTGCAACTAAGAAAGAACAAGCTCGATAAGAAGCTCAAATACATCCACGCCTGGAGGAAGGTTTCGAGTATTATATTTGTTGCTACATTTGCTGCTGTGTTGATTTGTTCTGTTGTGGCAGCAGCCATGGCTGCTCCACCTGTTGCAGCAGCTCTGGCTGCTGCTAGTTCTATCCCTGTAGGCTCAATGGGGAAGTGGATTGACTCTTTGTGGAAAAACTATGAAAATGCTTTGAGGGGTCAAAAGGAAGTAATTAGCTCCATGCAAGTAGGGACTTACGTTGCCATAAAGGACTTGGACAACATTCGGGTTCTTATCGATCGATTGGAAGTTGAAATTGAGTCCCTCTTGCATAATGCAAGCTTTGCCATTGAGGAGGATGCAGTTACAGTTGCAATTGAGGAGATTAAAAAGAAGTTGGGAGTGTTTATGAAGAATGTAGAGGATTTGGGAGCTCAAGCTGATACCTGCAGCCGTGACATTCGAAGAGCAAGGACTGTGGTTCTGCAGAGGATCATAAAACATTCCAACAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

376

Amino Acids

42.29

Weight (kDa)

5.66

Isoelectric Point (pI)

47.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34320 AT4G34320
fragaria_vesca	FvH4_2g08180 FvH4_2g08180
malus_domestica	MD05G1070600.v1.1 MD10G1081600.v1.1
prunus_persica	Prupe.8G103100_v2.0.a1 Prupe.8G103100_v2.0.a1 Prupe.8G103100_v2.0.a1
pyrus_communis	pycom10g06450
rosa_chinensis	RchiOBHm_Chr6g0262961
rosa_laevigata	RLG00000014389
rosa_multiflora	Rmu_sc0006493.1_g000001
rosa_roxburghii	Rroxscaffold_7G00204820
rosa_rugosa	Rorug06G0002500 Rorug06G0002600
rosa_samantha	Rh6AG121300 Rh6BG114900 Rh6CG113300 Rh6DG102600
rosa_wichuraiana	Rw6G010410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1067
AclWI	GGATC	2 cut(s)	515, 1112
AcsI	RAATTY	2 cut(s)	502, 546
AcuI	CTGAAG	1 cut(s)	552
AfaI	GTAC	2 cut(s)	338, 373
AgsI	TTSAA	8 cut(s)	197, 226, 344, 394, 437, 499, 554, 926
AjnI	CCWGG	2 cut(s)	258, 641
AjuI	GAANNNNNNNTTGG	4 cut(s)	263, 295, 405, 437
AloI	GAACNNNNNNTCC	2 cut(s)	183, 215
Alw21I	GWGCWC	4 cut(s)	29, 208, 403, 1048
AlwI	GGATC	2 cut(s)	515, 1112
ApoI	RAATTY	2 cut(s)	502, 546
AsuHPI	GGTGA	1 cut(s)	530
AsuII	TTCGAA	1 cut(s)	1075
BanII	GRGCYC	4 cut(s)	29, 208, 403, 1048
BarI	GAAGNNNNNNTAC	2 cut(s)	614, 646
BauI	CACGAG	2 cut(s)	402, 478
Bbv12I	GWGCWC	4 cut(s)	29, 208, 403, 1048
BceAI	ACGGC	1 cut(s)	1050
BciT130I	CCWGG	2 cut(s)	260, 643
BclI	TGATCA	1 cut(s)	82
BfaI	CTAG	2 cut(s)	756, 1126
BfmI	CTRYAG	4 cut(s)	513, 768, 1060, 1097
BfuAI	ACCTGC	1 cut(s)	1067
BmcAI	AGTACT	1 cut(s)	338
Bme1390I	CCNGG	2 cut(s)	260, 643
BmrFI	CCNGG	2 cut(s)	260, 643
BmsI	GCATC	2 cut(s)	109, 961
BpmI	CTGGAG	1 cut(s)	664
Bpu14I	TTCGAA	1 cut(s)	1075
BpuEI	CTTGAG	2 cut(s)	605, 1032
Bsa29I	ATCGAT	2 cut(s)	909, 913
BsaBI	GATNNNNATC	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	717
BsaXI	ACNNNNNCTCC	2 cut(s)	183, 213
Bse8I	GATNNNNATC	1 cut(s)	144
BseBI	CCWGG	2 cut(s)	260, 643
BseCI	ATCGAT	2 cut(s)	909, 913
BseDI	CCNNGG	1 cut(s)	717
BseGI	GGATG	3 cut(s)	38, 633, 976
BseJI	GATNNNNATC	1 cut(s)	144
BseRI	GAGGAG	4 cut(s)	347, 461, 980, 1007
Bsh1285I	CGRYCG	1 cut(s)	913
BshVI	ATCGAT	2 cut(s)	909, 913
BsiEI	CGRYCG	1 cut(s)	913
BsiHKAI	GWGCWC	4 cut(s)	29, 208, 403, 1048
BslFI	GGGAC	2 cut(s)	877, 919
BsmFI	GGGAC	2 cut(s)	877, 919
BsmI	GAATGC	1 cut(s)	245
Bsp119I	TTCGAA	1 cut(s)	1075
Bsp1286I	GDGCHC	4 cut(s)	29, 208, 403, 1048
Bsp143I	GATC	4 cut(s)	82, 520, 910, 1104
Bsp19I	CCATGG	1 cut(s)	717
BspDI	ATCGAT	2 cut(s)	909, 913
BspMAI	CTGCAG	2 cut(s)	1064, 1101
BspMI	ACCTGC	1 cut(s)	1067
BspPI	GGATC	2 cut(s)	515, 1112
BspQI	GCTCTTC	3 cut(s)	17, 438, 1072
BspT104I	TTCGAA	1 cut(s)	1075
BssECI	CCNNGG	1 cut(s)	717
BssMI	GATC	4 cut(s)	82, 520, 910, 1104
BssSI	CACGAG	2 cut(s)	402, 478
BssT1I	CCWWGG	1 cut(s)	717
Bst2BI	CACGAG	2 cut(s)	402, 478
Bst2UI	CCWGG	2 cut(s)	260, 643
Bst4CI	ACNGT	3 cut(s)	441, 982, 1090
Bst6I	CTCTTC	4 cut(s)	17, 438, 528, 1072
BstAPI	GCANNNNNTGC	1 cut(s)	956
BstBI	TTCGAA	1 cut(s)	1075
BstC8I	GCNNGC	4 cut(s)	109, 353, 399, 952
BstDEI	CTNAG	1 cut(s)	599
BstDSI	CCRYGG	1 cut(s)	717
BstF5I	GGATG	3 cut(s)	38, 633, 976
BstKTI	GATC	4 cut(s)	85, 523, 913, 1107
BstMBI	GATC	4 cut(s)	82, 520, 910, 1104
BstMCI	CGRYCG	1 cut(s)	913
BstMWI	GCNNNNNNNGC	8 cut(s)	15, 24, 680, 719, 722, 746, 749, 956
BstNI	CCWGG	2 cut(s)	260, 643
BstSCI	CCNGG	2 cut(s)	258, 641
BstSFI	CTRYAG	4 cut(s)	513, 768, 1060, 1097
Bsu15I	ATCGAT	2 cut(s)	909, 913
BsuTUI	ATCGAT	2 cut(s)	909, 913
BtgI	CCRYGG	1 cut(s)	717
BtsCI	GGATG	3 cut(s)	38, 633, 976
BveI	ACCTGC	1 cut(s)	1067
Cac8I	GCNNGC	4 cut(s)	109, 353, 399, 952
ClaI	ATCGAT	2 cut(s)	909, 913
Csp6I	GTAC	2 cut(s)	337, 372
CspCI	CAANNNNNGTGG	2 cut(s)	1071, 1106
CviAII	CATG	2 cut(s)	718, 853
CviQI	GTAC	2 cut(s)	337, 372
DdeI	CTNAG	1 cut(s)	599
DpnI	GATC	4 cut(s)	84, 522, 912, 1106
DpnII	GATC	4 cut(s)	82, 520, 910, 1104
Eam1104I	CTCTTC	4 cut(s)	17, 438, 528, 1072
EarI	CTCTTC	4 cut(s)	17, 438, 528, 1072
Ecl136II	GAGCTC	4 cut(s)	27, 206, 401, 1046
Eco130I	CCWWGG	1 cut(s)	717
Eco24I	GRGCYC	4 cut(s)	29, 208, 403, 1048
Eco53kI	GAGCTC	4 cut(s)	27, 206, 401, 1046
Eco57I	CTGAAG	1 cut(s)	552
EcoICRI	GAGCTC	4 cut(s)	27, 206, 401, 1046
EcoRII	CCWGG	2 cut(s)	258, 641
EcoT14I	CCWWGG	1 cut(s)	717
EcoT38I	GRGCYC	4 cut(s)	29, 208, 403, 1048
ErhI	CCWWGG	1 cut(s)	717
FaeI	CATG	2 cut(s)	721, 856
FaqI	GGGAC	2 cut(s)	877, 919
FatI	CATG	2 cut(s)	717, 852
FauNDI	CATATG	2 cut(s)	12, 97
FbaI	TGATCA	1 cut(s)	82
FokI	GGATG	3 cut(s)	25, 620, 983
FriOI	GRGCYC	4 cut(s)	29, 208, 403, 1048
FspBI	CTAG	2 cut(s)	756, 1126
GsuI	CTGGAG	1 cut(s)	664
Hin1II	CATG	2 cut(s)	721, 856
HindIII	AAGCTT	1 cut(s)	952
HinfI	GANTC	3 cut(s)	218, 794, 932
HphI	GGTGA	1 cut(s)	530
Hpy166II	GTNNAC	1 cut(s)	562
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	2 cut(s)	311, 404
Hpy8I	GTNNAC	1 cut(s)	562
HpyAV	CCTTC	3 cut(s)	220, 286, 643
HpyCH4III	ACNGT	3 cut(s)	441, 982, 1090
HpyCH4IV	ACGT	1 cut(s)	870
HpyF10VI	GCNNNNNNNGC	8 cut(s)	15, 24, 680, 719, 722, 746, 749, 956
HpyF3I	CTNAG	1 cut(s)	599
HpySE526I	ACGT	1 cut(s)	870
Hsp92II	CATG	2 cut(s)	721, 856
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	4 cut(s)	82, 520, 910, 1104
LguI	GCTCTTC	3 cut(s)	17, 438, 1072
LmnI	GCTCC	3 cut(s)	730, 854, 1043
LweI	GCATC	2 cut(s)	109, 961
MaeI	CTAG	2 cut(s)	756, 1126
MaeII	ACGT	1 cut(s)	870
MaeIII	GTNAC	2 cut(s)	976, 1067
MalI	GATC	4 cut(s)	84, 522, 912, 1106
MboI	GATC	4 cut(s)	82, 520, 910, 1104
MboII	GAAGA	7 cut(s)	34, 425, 511, 532, 545, 1036, 1089
MfeI	CAATTG	3 cut(s)	180, 413, 987
MhlI	GDGCHC	4 cut(s)	29, 208, 403, 1048
MlyI	GAGTC	2 cut(s)	788, 941
MmeI	TCCRAC	1 cut(s)	228
MseI	TTAA	3 cut(s)	89, 507, 999
MspR9I	CCNGG	2 cut(s)	260, 643
MunI	CAATTG	3 cut(s)	180, 413, 987
Mva1269I	GAATGC	1 cut(s)	245
MvaI	CCWGG	2 cut(s)	260, 643
MwoI	GCNNNNNNNGC	8 cut(s)	15, 24, 680, 719, 722, 746, 749, 956
NcoI	CCATGG	1 cut(s)	717
NdeI	CATATG	2 cut(s)	12, 97
NdeII	GATC	4 cut(s)	82, 520, 910, 1104
NlaIII	CATG	2 cut(s)	721, 856
NmuCI	GTSAC	1 cut(s)	1067
NspV	TTCGAA	1 cut(s)	1075
PciSI	GCTCTTC	3 cut(s)	17, 438, 1072
PctI	GAATGC	1 cut(s)	245
PfeI	GAWTC	1 cut(s)	218
Ple19I	CGATCG	1 cut(s)	913
PleI	GAGTC	2 cut(s)	788, 940
PpsI	GAGTC	2 cut(s)	788, 940
Psp124BI	GAGCTC	4 cut(s)	29, 208, 403, 1048
Psp6I	CCWGG	2 cut(s)	258, 641
PspGI	CCWGG	2 cut(s)	258, 641
PstI	CTGCAG	2 cut(s)	1064, 1101
PvuI	CGATCG	1 cut(s)	913
RsaI	GTAC	2 cut(s)	338, 373
RsaNI	GTAC	2 cut(s)	337, 372
SacI	GAGCTC	4 cut(s)	29, 208, 403, 1048
SapI	GCTCTTC	3 cut(s)	17, 438, 1072
SaqAI	TTAA	3 cut(s)	89, 507, 999
Sau3AI	GATC	4 cut(s)	82, 520, 910, 1104
ScaI	AGTACT	1 cut(s)	338
SchI	GAGTC	2 cut(s)	788, 941
ScrFI	CCNGG	2 cut(s)	260, 643
SduI	GDGCHC	4 cut(s)	29, 208, 403, 1048
SfaNI	GCATC	2 cut(s)	109, 961
SfcI	CTRYAG	4 cut(s)	513, 768, 1060, 1097
SfuI	TTCGAA	1 cut(s)	1075
SmlI	CTYRAG	2 cut(s)	584, 1047
SmoI	CTYRAG	2 cut(s)	584, 1047
SspMI	CTAG	2 cut(s)	756, 1126
SstI	GAGCTC	4 cut(s)	29, 208, 403, 1048
StyD4I	CCNGG	2 cut(s)	258, 641
StyI	CCWWGG	1 cut(s)	717
TaaI	ACNGT	3 cut(s)	441, 982, 1090
TaiI	ACGT	1 cut(s)	873
TaqI	TCGA	7 cut(s)	202, 472, 615, 656, 909, 913, 1075
TatI	WGTACW	2 cut(s)	336, 371
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	3 cut(s)	89, 507, 999
Tru9I	TTAA	3 cut(s)	89, 507, 999
TseFI	GTSAC	1 cut(s)	1067
Tsp45I	GTSAC	1 cut(s)	1067
TspDTI	ATGAA	4 cut(s)	210, 269, 828, 1037
XapI	RAATTY	2 cut(s)	502, 546
XcmI	CCANNNNNNNNNTGG	1 cut(s)	883
XspI	CTAG	2 cut(s)	756, 1126
ZrmI	AGTACT	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.