FvH4_2g08190

lipid-transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016256
Physical Location & Seq
Forward (+)
7129992 .. 7130612
621 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g08190.t1

Sequence Viewer

Length: 327 bp
ATGGAAGCATATAAAAAGCTTGTGATCGTTGCAGCTCTGGTGTTGGCATTGGCCATTGGTTCCAACGGTCAGGGACAGAGCTCCATCTGCCGCATGACCAAAGATGGCTTCCTGGCCTGTGCTCCATCAGTGACTGCGAGTGCGACTCCTGGGTTTATACCTGCAGCCCCCACTGCCGAGTGTTGCTCAGCTCTCTCCGTCGCCGACTTCCCGTGCCTGTGCTTCTTCATGAGAAACTCCAAGATTCTCAATGCCTATGGCGTCGACCCTAGCCTTGCCATGCAGCTCCCTGCTAAGTGCAACCTTGCCCGGTCCGTGCATTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

109

Amino Acids

11.2

Weight (kDa)

8.47

Isoelectric Point (pI)

36.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 14 - 107 1.5e-10 Probable lipid transfer
Tryp_alpha_amyl PF00234 30 - 105 1.2e-06 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016256)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08190
malus_domestica MD05G1070500.v1.1 MD10G1081500.v1.1
prunus_persica Prupe.8G102700_v2.0.a1 Prupe.8G103000_v2.0.a1
pyrus_communis pycom05g06080 pycom10g06440
rosa_chinensis RchiOBHm_Chr6g0262971
rosa_laevigata RLG00000014388
rosa_multiflora Rmu_sc0000596.1_g000070
rosa_roxburghii Rroxscaffold_7G00204810
rosa_rugosa Rorug06G0002700
rosa_samantha Rh6CG113400 Rh6DG102700
rosa_wichuraiana Rw6G010420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 169
AccI GTMKAC 1 cut(s) 264
AciI CCGC 1 cut(s) 91
AcoI YGGCCR 1 cut(s) 51
AcyI GRCGYC 1 cut(s) 261
AjnI CCWGG 2 cut(s) 111, 148
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
AluBI AGCT 5 cut(s) 19, 35, 81, 191, 286
AluI AGCT 5 cut(s) 19, 35, 81, 191, 286
Alw21I GWGCWC 2 cut(s) 83, 124
AlwNI CAGNNNCTG 1 cut(s) 134
AoxI GGCC 2 cut(s) 51, 114
ApeKI GCWGC 3 cut(s) 32, 164, 283
AspS9I GGNCC 1 cut(s) 312
AsuC2I CCSGG 1 cut(s) 310
AvaII GGWCC 1 cut(s) 312
BalI TGGCCA 1 cut(s) 53
BanII GRGCYC 1 cut(s) 83
Bbv12I GWGCWC 2 cut(s) 83, 124
BbvI GCAGC 3 cut(s) 44, 176, 295
BccI CCATC 3 cut(s) 92, 98, 133
BciT130I CCWGG 2 cut(s) 113, 150
BcnI CCSGG 1 cut(s) 310
BfaI CTAG 1 cut(s) 270
BfmI CTRYAG 1 cut(s) 162
BfuAI ACCTGC 1 cut(s) 169
BisI GCNGC 4 cut(s) 33, 91, 165, 284
BlpI GCTNAGC 1 cut(s) 187
BlsI GCNGC 4 cut(s) 34, 92, 166, 285
Bme1390I CCNGG 3 cut(s) 113, 150, 310
Bme18I GGWCC 1 cut(s) 312
BmgT120I GGNCC 1 cut(s) 312
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 3 cut(s) 113, 150, 310
BplI GAGNNNNNCTC 4 cut(s) 130, 162, 170, 202
Bpu1102I GCTNAGC 1 cut(s) 187
BpuMI CCSGG 1 cut(s) 310
BsaHI GRCGYC 1 cut(s) 261
BsaJI CCNNGG 1 cut(s) 149
Bse3DI GCAATG 1 cut(s) 319
BseBI CCWGG 2 cut(s) 113, 150
BseDI CCNNGG 1 cut(s) 149
BseMI GCAATG 1 cut(s) 319
BseMII CTCAG 1 cut(s) 201
BseXI GCAGC 3 cut(s) 44, 176, 295
BshFI GGCC 2 cut(s) 53, 116
BsiHKAI GWGCWC 2 cut(s) 83, 124
BsiSI CCGG 1 cut(s) 310
BslFI GGGAC 1 cut(s) 87
BsmFI GGGAC 1 cut(s) 87
BsnI GGCC 2 cut(s) 53, 116
Bsp1286I GDGCHC 2 cut(s) 83, 124
Bsp143I GATC 1 cut(s) 24
Bsp1720I GCTNAGC 1 cut(s) 187
BspACI CCGC 1 cut(s) 91
BspANI GGCC 2 cut(s) 53, 116
BspCNI CTCAG 1 cut(s) 200
BspHI TCATGA 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 61
BspMAI CTGCAG 1 cut(s) 166
BspMI ACCTGC 1 cut(s) 169
BsrDI GCAATG 1 cut(s) 319
BssECI CCNNGG 1 cut(s) 149
BssMI GATC 1 cut(s) 24
BssNI GRCGYC 1 cut(s) 261
Bst2UI CCWGG 2 cut(s) 113, 150
Bst4CI ACNGT 1 cut(s) 68
BstACI GRCGYC 1 cut(s) 261
BstDEI CTNAG 2 cut(s) 187, 294
BstKTI GATC 1 cut(s) 27
BstMBI GATC 1 cut(s) 24
BstMWI GCNNNNNNNGC 2 cut(s) 87, 173
BstNI CCWGG 2 cut(s) 113, 150
BstSCI CCNGG 3 cut(s) 111, 148, 308
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 3 cut(s) 44, 176, 295
BsuRI GGCC 2 cut(s) 53, 116
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 2 cut(s) 135, 171
BveI ACCTGC 1 cut(s) 169
CaiI CAGNNNCTG 1 cut(s) 134
CciI TCATGA 1 cut(s) 228
Cfr13I GGNCC 1 cut(s) 312
CpoI CGGWCCG 1 cut(s) 312
CseI GACGC 1 cut(s) 250
CspI CGGWCCG 1 cut(s) 312
CviAII CATG 3 cut(s) 94, 229, 280
DdeI CTNAG 2 cut(s) 187, 294
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
EaeI YGGCCR 1 cut(s) 51
Ecl136II GAGCTC 1 cut(s) 81
Eco24I GRGCYC 1 cut(s) 83
Eco47I GGWCC 1 cut(s) 312
Eco53kI GAGCTC 1 cut(s) 81
EcoICRI GAGCTC 1 cut(s) 81
EcoRII CCWGG 2 cut(s) 111, 148
EcoT38I GRGCYC 1 cut(s) 83
FaeI CATG 3 cut(s) 97, 232, 283
FaiI YATR 7 cut(s) 10, 12, 95, 158, 230, 258, 281
FaqI GGGAC 1 cut(s) 87
FatI CATG 3 cut(s) 93, 228, 279
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 4 cut(s) 33, 91, 165, 284
FriOI GRGCYC 1 cut(s) 83
Fsp4HI GCNGC 4 cut(s) 33, 91, 165, 284
FspBI CTAG 1 cut(s) 270
GluI GCNGC 4 cut(s) 33, 91, 165, 284
HaeIII GGCC 2 cut(s) 53, 116
HapII CCGG 1 cut(s) 310
HgaI GACGC 1 cut(s) 250
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 3 cut(s) 97, 232, 283
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 2 cut(s) 145, 244
HpaII CCGG 1 cut(s) 310
Hpy166II GTNNAC 1 cut(s) 265
Hpy188III TCNNGA 1 cut(s) 229
Hpy8I GTNNAC 1 cut(s) 265
Hpy99I CGWCG 2 cut(s) 203, 266
HpyCH4III ACNGT 1 cut(s) 68
HpyCH4V TGCA 5 cut(s) 32, 164, 283, 300, 319
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 173
HpyF3I CTNAG 2 cut(s) 187, 294
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 3 cut(s) 97, 232, 283
Kzo9I GATC 1 cut(s) 24
LmnI GCTCC 3 cut(s) 86, 127, 291
Lsp1109I GCAGC 3 cut(s) 44, 176, 295
MaeI CTAG 1 cut(s) 270
MaeIII GTNAC 1 cut(s) 130
MalI GATC 1 cut(s) 26
MboI GATC 1 cut(s) 24
MboII GAAGA 1 cut(s) 217
MhlI GDGCHC 2 cut(s) 83, 124
MlsI TGGCCA 1 cut(s) 53
MluNI TGGCCA 1 cut(s) 53
MlyI GAGTC 1 cut(s) 139
MmeI TCCRAC 1 cut(s) 87
Mox20I TGGCCA 1 cut(s) 53
MscI TGGCCA 1 cut(s) 53
Msp20I TGGCCA 1 cut(s) 53
MspI CCGG 1 cut(s) 310
MspR9I CCNGG 3 cut(s) 113, 150, 310
MvaI CCWGG 2 cut(s) 113, 150
MwoI GCNNNNNNNGC 2 cut(s) 87, 173
NciI CCSGG 1 cut(s) 310
NdeII GATC 1 cut(s) 24
NlaIII CATG 3 cut(s) 97, 232, 283
NlaIV GGNNCC 1 cut(s) 61
NmeAIII GCCGAG 1 cut(s) 202
NmuCI GTSAC 1 cut(s) 130
PagI TCATGA 1 cut(s) 228
PfeI GAWTC 1 cut(s) 244
PkrI GCNGC 4 cut(s) 34, 92, 166, 285
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
Psp124BI GAGCTC 1 cut(s) 83
Psp6I CCWGG 2 cut(s) 111, 148
PspGI CCWGG 2 cut(s) 111, 148
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 1 cut(s) 312
PstI CTGCAG 1 cut(s) 166
PstNI CAGNNNCTG 1 cut(s) 134
Rsr2I CGGWCCG 1 cut(s) 312
RsrII CGGWCCG 1 cut(s) 312
SacI GAGCTC 1 cut(s) 83
SalI GTCGAC 1 cut(s) 263
SatI GCNGC 4 cut(s) 33, 91, 165, 284
Sau3AI GATC 1 cut(s) 24
Sau96I GGNCC 1 cut(s) 312
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 3 cut(s) 113, 150, 310
SduI GDGCHC 2 cut(s) 83, 124
SetI ASST 7 cut(s) 21, 37, 83, 163, 193, 288, 306
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 1 cut(s) 312
SsiI CCGC 1 cut(s) 91
SspMI CTAG 1 cut(s) 270
SstI GAGCTC 1 cut(s) 83
StyD4I CCNGG 3 cut(s) 111, 148, 308
TaaI ACNGT 1 cut(s) 68
TaqI TCGA 1 cut(s) 264
TauI GCSGC 1 cut(s) 93
TfiI GAWTC 1 cut(s) 244
TscAI CASTG 2 cut(s) 135, 178
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 3 cut(s) 32, 164, 283
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 1 cut(s) 217
TspGWI ACGGA 2 cut(s) 187, 304
TspRI CASTG 2 cut(s) 135, 178
VpaK11BI GGWCC 1 cut(s) 312
XmiI GTMKAC 1 cut(s) 264
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.