RchiOBHm_Chr6g0262971

lipid-transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0016256
Physical Location & Seq
Forward (+)
17765439 .. 17765759
321 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23584

Sequence Viewer

Length: 321 bp
ATGGAAGCATACAAAAAGCTTGTGATCATTGCAGCTTTGGTGTTGGCATTGGCCATTGGGTCCAATGGTCAGGGACAGAGCTCCATCTGCCGCATGACCAAAGACGGCTTCGTGGCCTGTGCTCCGTCAGTGACTGCGACTCCTGGGATTATCCCTGCAGCCCCCACAGCCGAGTGTTGCTCAGCTCTTTCCGTCGCCGACTTTCCGTGCCTGTGCTTCTTCATGAGAAACTCGAAGCTTCTCACTACCTATGGAGTCGACCCTAACCTTGCCATGCAGCTCCCTGCTAAATGCAAACTTGCCCGGTCTGTGCATTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

106

Amino Acids

11.07

Weight (kDa)

8.69

Isoelectric Point (pI)

32.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 16 - 105 9.4e-12 Probable lipid transfer
Tryp_alpha_amyl PF00234 34 - 103 6.8e-06 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016256)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08190
malus_domestica MD05G1070500.v1.1 MD10G1081500.v1.1
prunus_persica Prupe.8G102700_v2.0.a1 Prupe.8G103000_v2.0.a1
pyrus_communis pycom05g06080 pycom10g06440
rosa_chinensis RchiOBHm_Chr6g0262971
rosa_laevigata RLG00000014388
rosa_multiflora Rmu_sc0000596.1_g000070
rosa_roxburghii Rroxscaffold_7G00204810
rosa_rugosa Rorug06G0002700
rosa_samantha Rh6CG113400 Rh6DG102700
rosa_wichuraiana Rw6G010420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 258
AciI CCGC 1 cut(s) 91
AcoI YGGCCR 1 cut(s) 51
AjnI CCWGG 1 cut(s) 142
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
AluBI AGCT 6 cut(s) 19, 35, 81, 185, 238, 280
AluI AGCT 6 cut(s) 19, 35, 81, 185, 238, 280
Alw21I GWGCWC 2 cut(s) 83, 124
AlwNI CAGNNNCTG 1 cut(s) 134
AoxI GGCC 2 cut(s) 51, 114
ApeKI GCWGC 3 cut(s) 32, 158, 277
AspS9I GGNCC 1 cut(s) 60
AsuC2I CCSGG 1 cut(s) 304
AvaII GGWCC 1 cut(s) 60
BalI TGGCCA 1 cut(s) 53
BanII GRGCYC 1 cut(s) 83
Bbv12I GWGCWC 2 cut(s) 83, 124
BbvI GCAGC 3 cut(s) 44, 170, 289
BccI CCATC 1 cut(s) 92
BceAI ACGGC 1 cut(s) 121
BciT130I CCWGG 1 cut(s) 144
BclI TGATCA 1 cut(s) 24
BcnI CCSGG 1 cut(s) 304
BfmI CTRYAG 1 cut(s) 156
BisI GCNGC 4 cut(s) 33, 91, 159, 278
BlpI GCTNAGC 1 cut(s) 181
BlsI GCNGC 4 cut(s) 34, 92, 160, 279
Bme1390I CCNGG 2 cut(s) 144, 304
Bme18I GGWCC 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 60
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 2 cut(s) 144, 304
BplI GAGNNNNNCTC 2 cut(s) 164, 196
Bpu1102I GCTNAGC 1 cut(s) 181
BpuMI CCSGG 1 cut(s) 304
BsaJI CCNNGG 1 cut(s) 143
BsaXI ACNNNNNCTCC 2 cut(s) 124, 154
Bse3DI GCAATG 2 cut(s) 27, 313
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 143
BseMI GCAATG 2 cut(s) 27, 313
BseMII CTCAG 1 cut(s) 195
BseXI GCAGC 3 cut(s) 44, 170, 289
BshFI GGCC 2 cut(s) 53, 116
BsiHKAI GWGCWC 2 cut(s) 83, 124
BsiSI CCGG 1 cut(s) 304
BslFI GGGAC 1 cut(s) 87
BsmFI GGGAC 1 cut(s) 87
BsnI GGCC 2 cut(s) 53, 116
Bsp1286I GDGCHC 2 cut(s) 83, 124
Bsp143I GATC 1 cut(s) 24
Bsp1720I GCTNAGC 1 cut(s) 181
BspACI CCGC 1 cut(s) 91
BspANI GGCC 2 cut(s) 53, 116
BspCNI CTCAG 1 cut(s) 194
BspHI TCATGA 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 61
BspMAI CTGCAG 1 cut(s) 160
BsrDI GCAATG 2 cut(s) 27, 313
BssECI CCNNGG 1 cut(s) 143
BssMI GATC 1 cut(s) 24
Bst2UI CCWGG 1 cut(s) 144
BstDEI CTNAG 1 cut(s) 181
BstKTI GATC 1 cut(s) 27
BstMBI GATC 1 cut(s) 24
BstMWI GCNNNNNNNGC 2 cut(s) 87, 167
BstNI CCWGG 1 cut(s) 144
BstSCI CCNGG 2 cut(s) 142, 302
BstSFI CTRYAG 1 cut(s) 156
BstV1I GCAGC 3 cut(s) 44, 170, 289
BsuRI GGCC 2 cut(s) 53, 116
BtsIMutI CAGTG 1 cut(s) 135
CaiI CAGNNNCTG 1 cut(s) 134
CciI TCATGA 1 cut(s) 222
Cfr13I GGNCC 1 cut(s) 60
CviAII CATG 3 cut(s) 94, 223, 274
DdeI CTNAG 1 cut(s) 181
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
EaeI YGGCCR 1 cut(s) 51
Ecl136II GAGCTC 1 cut(s) 81
Eco24I GRGCYC 1 cut(s) 83
Eco47I GGWCC 1 cut(s) 60
Eco53kI GAGCTC 1 cut(s) 81
EcoICRI GAGCTC 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 142
EcoT38I GRGCYC 1 cut(s) 83
FaeI CATG 3 cut(s) 97, 226, 277
FaiI YATR 5 cut(s) 10, 95, 224, 252, 275
FaqI GGGAC 1 cut(s) 87
FatI CATG 3 cut(s) 93, 222, 273
FbaI TGATCA 1 cut(s) 24
FblI GTMKAC 1 cut(s) 258
Fnu4HI GCNGC 4 cut(s) 33, 91, 159, 278
FriOI GRGCYC 1 cut(s) 83
Fsp4HI GCNGC 4 cut(s) 33, 91, 159, 278
GluI GCNGC 4 cut(s) 33, 91, 159, 278
HaeIII GGCC 2 cut(s) 53, 116
HapII CCGG 1 cut(s) 304
Hin1II CATG 3 cut(s) 97, 226, 277
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HindIII AAGCTT 2 cut(s) 17, 236
HinfI GANTC 2 cut(s) 139, 255
HpaII CCGG 1 cut(s) 304
Hpy166II GTNNAC 1 cut(s) 259
Hpy188III TCNNGA 1 cut(s) 223
Hpy8I GTNNAC 1 cut(s) 259
Hpy99I CGWCG 1 cut(s) 197
HpyCH4V TGCA 5 cut(s) 32, 158, 277, 294, 313
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 167
HpyF3I CTNAG 1 cut(s) 181
Hsp92II CATG 3 cut(s) 97, 226, 277
Ksp22I TGATCA 1 cut(s) 24
Kzo9I GATC 1 cut(s) 24
LmnI GCTCC 3 cut(s) 86, 127, 285
LpnPI CCDG 8 cut(s) 56, 129, 130, 156, 168, 224, 297, 317
Lsp1109I GCAGC 3 cut(s) 44, 170, 289
MaeIII GTNAC 1 cut(s) 130
MalI GATC 1 cut(s) 26
MboI GATC 1 cut(s) 24
MboII GAAGA 1 cut(s) 211
MhlI GDGCHC 2 cut(s) 83, 124
MlsI TGGCCA 1 cut(s) 53
MluNI TGGCCA 1 cut(s) 53
MlyI GAGTC 2 cut(s) 133, 264
Mox20I TGGCCA 1 cut(s) 53
MscI TGGCCA 1 cut(s) 53
Msp20I TGGCCA 1 cut(s) 53
MspI CCGG 1 cut(s) 304
MspR9I CCNGG 2 cut(s) 144, 304
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 2 cut(s) 87, 167
NciI CCSGG 1 cut(s) 304
NdeII GATC 1 cut(s) 24
NlaIII CATG 3 cut(s) 97, 226, 277
NlaIV GGNNCC 1 cut(s) 61
NmeAIII GCCGAG 1 cut(s) 196
NmuCI GTSAC 1 cut(s) 130
PagI TCATGA 1 cut(s) 222
PkrI GCNGC 4 cut(s) 34, 92, 160, 279
PleI GAGTC 2 cut(s) 133, 263
PpsI GAGTC 2 cut(s) 133, 263
Psp124BI GAGCTC 1 cut(s) 83
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 1 cut(s) 60
PstI CTGCAG 1 cut(s) 160
PstNI CAGNNNCTG 1 cut(s) 134
SacI GAGCTC 1 cut(s) 83
SalI GTCGAC 1 cut(s) 257
SatI GCNGC 4 cut(s) 33, 91, 159, 278
Sau3AI GATC 1 cut(s) 24
Sau96I GGNCC 1 cut(s) 60
SchI GAGTC 2 cut(s) 133, 264
ScrFI CCNGG 2 cut(s) 144, 304
SduI GDGCHC 2 cut(s) 83, 124
SetI ASST 8 cut(s) 21, 37, 83, 187, 240, 251, 270, 282
SfcI CTRYAG 1 cut(s) 156
SinI GGWCC 1 cut(s) 60
SsiI CCGC 1 cut(s) 91
SstI GAGCTC 1 cut(s) 83
StyD4I CCNGG 2 cut(s) 142, 302
TaqI TCGA 2 cut(s) 233, 258
TauI GCSGC 1 cut(s) 93
TscAI CASTG 1 cut(s) 135
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 3 cut(s) 32, 158, 277
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 1 cut(s) 211
TspGWI ACGGA 3 cut(s) 114, 181, 195
TspRI CASTG 1 cut(s) 135
VpaK11BI GGWCC 1 cut(s) 60
XmiI GTMKAC 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.