Rmu_sc0000596.1_g000070

lipid-transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000596.1
OG0016256
Physical Location & Seq
Forward (+)
347492 .. 347896
405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000596.1_g000070.1.cds

Sequence Viewer

Length: 405 bp
atgccgaagccacaaaccatcatctcctccaagaaactaaactacagattggtgagaaagaaagatcgagctcgatcgaaagacatggaagcatacaaaaagtttgtgatcattgcagctttggtgttggcatcggccattgagtccaatggtcagggacagagctccatctgccgcatgaccaaagacggcttcgtggcctgtgctccgtcagtgactgcgactcctgggattagccctgccgcccccacagccgagtgttgctcagctctttccgtcgccgactttccgtgcctgtgcttcttcatgagaaactcgaagcttctcactacctatggagtcgaccctaaccttgccatgcagctccctgctaaatgcaaacttgcccggtctgtgcattgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

134

Amino Acids

14.46

Weight (kDa)

9.53

Isoelectric Point (pI)

42.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016256)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08190
malus_domestica MD05G1070500.v1.1 MD10G1081500.v1.1
prunus_persica Prupe.8G102700_v2.0.a1 Prupe.8G103000_v2.0.a1
pyrus_communis pycom05g06080 pycom10g06440
rosa_chinensis RchiOBHm_Chr6g0262971
rosa_laevigata RLG00000014388
rosa_multiflora Rmu_sc0000596.1_g000070
rosa_roxburghii Rroxscaffold_7G00204810
rosa_rugosa Rorug06G0002700
rosa_samantha Rh6CG113400 Rh6DG102700
rosa_wichuraiana Rw6G010420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 342
AciI CCGC 2 cut(s) 175, 243
AcoI YGGCCR 1 cut(s) 135
AjnI CCWGG 1 cut(s) 226
AjuI GAANNNNNNNTTGG 2 cut(s) 176, 208
AluBI AGCT 6 cut(s) 71, 119, 165, 269, 322, 364
AluI AGCT 6 cut(s) 71, 119, 165, 269, 322, 364
Alw21I GWGCWC 3 cut(s) 73, 167, 208
AlwNI CAGNNNCTG 1 cut(s) 218
AoxI GGCC 2 cut(s) 135, 198
ApeKI GCWGC 2 cut(s) 116, 361
AsuC2I CCSGG 1 cut(s) 388
AsuHPI GGTGA 1 cut(s) 64
BanII GRGCYC 2 cut(s) 73, 167
Bbv12I GWGCWC 3 cut(s) 73, 167, 208
BbvI GCAGC 2 cut(s) 128, 373
BccI CCATC 2 cut(s) 26, 176
BceAI ACGGC 1 cut(s) 205
BciT130I CCWGG 1 cut(s) 228
BclI TGATCA 1 cut(s) 108
BcnI CCSGG 1 cut(s) 388
BfmI CTRYAG 1 cut(s) 43
BisI GCNGC 4 cut(s) 117, 175, 243, 362
BlpI GCTNAGC 1 cut(s) 265
BlsI GCNGC 4 cut(s) 118, 176, 244, 363
Bme1390I CCNGG 2 cut(s) 228, 388
BmrFI CCNGG 2 cut(s) 228, 388
BmsI GCATC 1 cut(s) 140
BplI GAGNNNNNCTC 2 cut(s) 248, 280
Bpu1102I GCTNAGC 1 cut(s) 265
BpuMI CCSGG 1 cut(s) 388
BsaJI CCNNGG 1 cut(s) 227
BsaXI ACNNNNNCTCC 2 cut(s) 208, 238
Bse3DI GCAATG 2 cut(s) 111, 397
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 227
BseMI GCAATG 2 cut(s) 111, 397
BseMII CTCAG 1 cut(s) 279
BseRI GAGGAG 1 cut(s) 16
BseXI GCAGC 2 cut(s) 128, 373
Bsh1285I CGRYCG 1 cut(s) 77
BshFI GGCC 2 cut(s) 137, 200
BsiEI CGRYCG 1 cut(s) 77
BsiHKAI GWGCWC 3 cut(s) 73, 167, 208
BsiSI CCGG 1 cut(s) 388
BslFI GGGAC 1 cut(s) 171
BsmFI GGGAC 1 cut(s) 171
BsnI GGCC 2 cut(s) 137, 200
Bsp1286I GDGCHC 3 cut(s) 73, 167, 208
Bsp143I GATC 3 cut(s) 64, 74, 108
Bsp1720I GCTNAGC 1 cut(s) 265
BspACI CCGC 2 cut(s) 175, 243
BspANI GGCC 2 cut(s) 137, 200
BspCNI CTCAG 1 cut(s) 278
BspHI TCATGA 1 cut(s) 306
BsrDI GCAATG 2 cut(s) 111, 397
BssECI CCNNGG 1 cut(s) 227
BssMI GATC 3 cut(s) 64, 74, 108
Bst2UI CCWGG 1 cut(s) 228
BstDEI CTNAG 1 cut(s) 265
BstKTI GATC 3 cut(s) 67, 77, 111
BstMBI GATC 3 cut(s) 64, 74, 108
BstMCI CGRYCG 1 cut(s) 77
BstMWI GCNNNNNNNGC 2 cut(s) 171, 251
BstNI CCWGG 1 cut(s) 228
BstSCI CCNGG 2 cut(s) 226, 386
BstSFI CTRYAG 1 cut(s) 43
BstV1I GCAGC 2 cut(s) 128, 373
BsuRI GGCC 2 cut(s) 137, 200
BtsIMutI CAGTG 1 cut(s) 219
CaiI CAGNNNCTG 1 cut(s) 218
CciI TCATGA 1 cut(s) 306
CviAII CATG 4 cut(s) 85, 178, 307, 358
DdeI CTNAG 1 cut(s) 265
DpnI GATC 3 cut(s) 66, 76, 110
DpnII GATC 3 cut(s) 64, 74, 108
EaeI YGGCCR 1 cut(s) 135
Ecl136II GAGCTC 2 cut(s) 71, 165
Eco24I GRGCYC 2 cut(s) 73, 167
Eco53kI GAGCTC 2 cut(s) 71, 165
EcoICRI GAGCTC 2 cut(s) 71, 165
EcoRII CCWGG 1 cut(s) 226
EcoT38I GRGCYC 2 cut(s) 73, 167
FaeI CATG 4 cut(s) 88, 181, 310, 361
FaiI YATR 6 cut(s) 86, 94, 179, 308, 336, 359
FaqI GGGAC 1 cut(s) 171
FatI CATG 4 cut(s) 84, 177, 306, 357
FbaI TGATCA 1 cut(s) 108
FblI GTMKAC 1 cut(s) 342
Fnu4HI GCNGC 4 cut(s) 117, 175, 243, 362
FriOI GRGCYC 2 cut(s) 73, 167
Fsp4HI GCNGC 4 cut(s) 117, 175, 243, 362
GluI GCNGC 4 cut(s) 117, 175, 243, 362
HaeIII GGCC 2 cut(s) 137, 200
HapII CCGG 1 cut(s) 388
Hin1II CATG 4 cut(s) 88, 181, 310, 361
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HindIII AAGCTT 1 cut(s) 320
HinfI GANTC 3 cut(s) 143, 223, 339
HpaII CCGG 1 cut(s) 388
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 1 cut(s) 343
Hpy188III TCNNGA 1 cut(s) 307
Hpy8I GTNNAC 1 cut(s) 343
Hpy99I CGWCG 1 cut(s) 281
HpyCH4V TGCA 4 cut(s) 116, 361, 378, 397
HpyF10VI GCNNNNNNNGC 2 cut(s) 171, 251
HpyF3I CTNAG 1 cut(s) 265
Hsp92II CATG 4 cut(s) 88, 181, 310, 361
Ksp22I TGATCA 1 cut(s) 108
Kzo9I GATC 3 cut(s) 64, 74, 108
LmnI GCTCC 3 cut(s) 170, 211, 369
LpnPI CCDG 8 cut(s) 140, 213, 214, 240, 252, 308, 381, 401
Lsp1109I GCAGC 2 cut(s) 128, 373
LweI GCATC 1 cut(s) 140
MaeIII GTNAC 1 cut(s) 214
MalI GATC 3 cut(s) 66, 76, 110
MboI GATC 3 cut(s) 64, 74, 108
MboII GAAGA 1 cut(s) 295
MhlI GDGCHC 3 cut(s) 73, 167, 208
MlyI GAGTC 3 cut(s) 152, 217, 348
MnlI CCTC 1 cut(s) 37
MspI CCGG 1 cut(s) 388
MspR9I CCNGG 2 cut(s) 228, 388
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 2 cut(s) 171, 251
NciI CCSGG 1 cut(s) 388
NdeII GATC 3 cut(s) 64, 74, 108
NlaIII CATG 4 cut(s) 88, 181, 310, 361
NmeAIII GCCGAG 1 cut(s) 280
NmuCI GTSAC 1 cut(s) 214
PagI TCATGA 1 cut(s) 306
PkrI GCNGC 4 cut(s) 118, 176, 244, 363
Ple19I CGATCG 1 cut(s) 77
PleI GAGTC 3 cut(s) 151, 217, 347
PpsI GAGTC 3 cut(s) 151, 217, 347
Psp124BI GAGCTC 2 cut(s) 73, 167
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PstNI CAGNNNCTG 1 cut(s) 218
PvuI CGATCG 1 cut(s) 77
SacI GAGCTC 2 cut(s) 73, 167
SalI GTCGAC 1 cut(s) 341
SatI GCNGC 4 cut(s) 117, 175, 243, 362
Sau3AI GATC 3 cut(s) 64, 74, 108
SchI GAGTC 3 cut(s) 152, 217, 348
ScrFI CCNGG 2 cut(s) 228, 388
SduI GDGCHC 3 cut(s) 73, 167, 208
SetI ASST 8 cut(s) 73, 121, 167, 271, 324, 335, 354, 366
SfaNI GCATC 1 cut(s) 140
SfcI CTRYAG 1 cut(s) 43
SsiI CCGC 2 cut(s) 175, 243
SstI GAGCTC 2 cut(s) 73, 167
StyD4I CCNGG 2 cut(s) 226, 386
TaqI TCGA 5 cut(s) 67, 73, 77, 317, 342
TauI GCSGC 2 cut(s) 177, 245
TscAI CASTG 1 cut(s) 219
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 2 cut(s) 116, 361
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 1 cut(s) 295
TspGWI ACGGA 3 cut(s) 198, 265, 279
TspRI CASTG 1 cut(s) 219
XmiI GTMKAC 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.