MD10G1081500.v1.1

lipid-transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0016256
Physical Location & Seq
Reverse (-)
11971059 .. 11971379
321 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1081500.v1.1.491

Sequence Viewer

Length: 321 bp
ATGGAAGCATACAGAAAGCTTGTTGTTCTTGTGGCATTGCTTTTGGCAGTAGCCATTGGCTCCGACGCCTTGATGGCCAACAGCGACGAGAGTTTTTGCCGCATGACGAAAGAAGGTCTGAATGCATGCGCCCCTTCAGTGAGCGGGGCGAACCCTCCGCCTCCCTCAGCTCTGTGTTGCTCGGCTCTTTCGTACGCGGACTTCGGATGCCTTTGCCTTTTCAAGAAGTACTCAAACTTTCTCAGTGCCTACGGAATCGACCCAAACCTTGCCATGCAGCTTCCTGCCAGATGTAACCTTCGCCAGCCCATCCGTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

107

Amino Acids

11.32

Weight (kDa)

8.14

Isoelectric Point (pI)

32.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 24 - 104 3e-11 Probable lipid transfer
Tryp_alpha_amyl PF00234 33 - 106 1.5e-08 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016256)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08190
malus_domestica MD05G1070500.v1.1 MD10G1081500.v1.1
prunus_persica Prupe.8G102700_v2.0.a1 Prupe.8G103000_v2.0.a1
pyrus_communis pycom05g06080 pycom10g06440
rosa_chinensis RchiOBHm_Chr6g0262971
rosa_laevigata RLG00000014388
rosa_multiflora Rmu_sc0000596.1_g000070
rosa_roxburghii Rroxscaffold_7G00204810
rosa_rugosa Rorug06G0002700
rosa_samantha Rh6CG113400 Rh6DG102700
rosa_wichuraiana Rw6G010420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 144
AccII CGCG 1 cut(s) 197
AciI CCGC 4 cut(s) 100, 144, 158, 197
AcoI YGGCCR 1 cut(s) 75
AcuI CTGAAG 1 cut(s) 120
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 2 cut(s) 194, 230
AgsI TTSAA 1 cut(s) 223
AluBI AGCT 3 cut(s) 19, 170, 280
AluI AGCT 3 cut(s) 19, 170, 280
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 1 cut(s) 277
AspLEI GCGC 1 cut(s) 131
BalI TGGCCA 1 cut(s) 77
BarI GAAGNNNNNNTAC 2 cut(s) 185, 217
BbvCI CCTCAGC 1 cut(s) 166
BbvI GCAGC 1 cut(s) 289
BccI CCATC 2 cut(s) 67, 317
BfaI CTAG 1 cut(s) 319
BglI GCCNNNNNGGC 1 cut(s) 74
BisI GCNGC 2 cut(s) 100, 278
BlsI GCNGC 2 cut(s) 101, 279
BmcAI AGTACT 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 61
BmsI GCATC 1 cut(s) 197
Bpu10I CCTNAGC 1 cut(s) 166
BsaHI GRCGYC 1 cut(s) 66
Bse3DI GCAATG 1 cut(s) 35
BseGI GGATG 2 cut(s) 212, 309
BseMI GCAATG 1 cut(s) 35
BseMII CTCAG 2 cut(s) 180, 256
BseXI GCAGC 1 cut(s) 289
Bsh1236I CGCG 1 cut(s) 197
BshFI GGCC 1 cut(s) 77
BsiWI CGTACG 1 cut(s) 192
BsmI GAATGC 1 cut(s) 127
BsnI GGCC 1 cut(s) 77
BspACI CCGC 4 cut(s) 100, 144, 158, 197
BspANI GGCC 1 cut(s) 77
BspCNI CTCAG 2 cut(s) 179, 255
BspFNI CGCG 1 cut(s) 197
BspLI GGNNCC 1 cut(s) 61
BsrBI CCGCTC 1 cut(s) 144
BsrDI GCAATG 1 cut(s) 35
BssNI GRCGYC 1 cut(s) 66
BstACI GRCGYC 1 cut(s) 66
BstC8I GCNNGC 2 cut(s) 127, 305
BstDEI CTNAG 2 cut(s) 166, 242
BstF5I GGATG 2 cut(s) 212, 309
BstFNI CGCG 1 cut(s) 197
BstHHI GCGC 1 cut(s) 131
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstNSI RCATGY 1 cut(s) 129
BstUI CGCG 1 cut(s) 197
BstV1I GCAGC 1 cut(s) 289
BsuRI GGCC 1 cut(s) 77
BtsCI GGATG 2 cut(s) 212, 309
BtsIMutI CAGTG 2 cut(s) 144, 250
Cac8I GCNNGC 2 cut(s) 127, 305
CfoI GCGC 1 cut(s) 131
CseI GACGC 1 cut(s) 74
Csp6I GTAC 2 cut(s) 193, 229
CviAII CATG 3 cut(s) 103, 126, 274
CviJI RGCY 8 cut(s) 19, 53, 60, 77, 170, 185, 280, 307
CviKI_1 RGCY 8 cut(s) 19, 53, 60, 77, 170, 185, 280, 307
CviQI GTAC 2 cut(s) 193, 229
DdeI CTNAG 2 cut(s) 166, 242
EaeI YGGCCR 1 cut(s) 75
EciI GGCGGA 1 cut(s) 147
Eco57I CTGAAG 1 cut(s) 120
EcoT22I ATGCAT 1 cut(s) 127
FaeI CATG 3 cut(s) 106, 129, 277
FaiI YATR 4 cut(s) 10, 104, 127, 275
FatI CATG 3 cut(s) 102, 125, 273
FauI CCCGC 1 cut(s) 137
Fnu4HI GCNGC 2 cut(s) 100, 278
FokI GGATG 2 cut(s) 219, 296
Fsp4HI GCNGC 2 cut(s) 100, 278
FspBI CTAG 1 cut(s) 319
GlaI GCGC 1 cut(s) 130
GluI GCNGC 2 cut(s) 100, 278
HaeIII GGCC 1 cut(s) 77
HgaI GACGC 1 cut(s) 74
HhaI GCGC 1 cut(s) 131
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 3 cut(s) 106, 129, 277
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 1 cut(s) 255
Hpy188I TCNGA 3 cut(s) 64, 120, 206
Hpy188III TCNNGA 1 cut(s) 223
Hpy99I CGWCG 2 cut(s) 68, 89
HpyAV CCTTC 3 cut(s) 107, 144, 308
HpyCH4V TGCA 2 cut(s) 125, 277
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 2 cut(s) 166, 242
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 3 cut(s) 106, 129, 277
HspAI GCGC 1 cut(s) 129
LmnI GCTCC 1 cut(s) 65
LpnPI CCDG 3 cut(s) 297, 301, 317
Lsp1109I GCAGC 1 cut(s) 289
LweI GCATC 1 cut(s) 197
MaeI CTAG 1 cut(s) 319
MaeIII GTNAC 1 cut(s) 293
MbiI CCGCTC 1 cut(s) 144
MlsI TGGCCA 1 cut(s) 77
MluNI TGGCCA 1 cut(s) 77
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 3 cut(s) 165, 171, 175
Mox20I TGGCCA 1 cut(s) 77
Mph1103I ATGCAT 1 cut(s) 127
MscI TGGCCA 1 cut(s) 77
Msp20I TGGCCA 1 cut(s) 77
Mva1269I GAATGC 1 cut(s) 127
MvnI CGCG 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 74
NlaIII CATG 3 cut(s) 106, 129, 277
NlaIV GGNNCC 1 cut(s) 61
NmeAIII GCCGAG 1 cut(s) 161
NsiI ATGCAT 1 cut(s) 127
NspI RCATGY 1 cut(s) 129
PaeI GCATGC 1 cut(s) 129
PcsI WCGNNNNNNNCGW 1 cut(s) 188
PctI GAATGC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 255
Pfl23II CGTACG 1 cut(s) 192
PkrI GCNGC 2 cut(s) 101, 279
PspLI CGTACG 1 cut(s) 192
PspN4I GGNNCC 1 cut(s) 61
RsaI GTAC 2 cut(s) 194, 230
RsaNI GTAC 2 cut(s) 193, 229
SatI GCNGC 2 cut(s) 100, 278
ScaI AGTACT 1 cut(s) 230
SetI ASST 6 cut(s) 21, 118, 172, 270, 282, 300
SfaNI GCATC 1 cut(s) 197
SphI GCATGC 1 cut(s) 129
SsiI CCGC 4 cut(s) 100, 144, 158, 197
SspMI CTAG 1 cut(s) 319
TaqI TCGA 1 cut(s) 258
TatI WGTACW 1 cut(s) 228
TauI GCSGC 1 cut(s) 102
TfiI GAWTC 1 cut(s) 255
TscAI CASTG 2 cut(s) 144, 250
TseI GCWGC 1 cut(s) 277
TspGWI ACGGA 2 cut(s) 267, 302
TspRI CASTG 2 cut(s) 144, 250
XceI RCATGY 1 cut(s) 129
XspI CTAG 1 cut(s) 319
ZrmI AGTACT 1 cut(s) 230
Zsp2I ATGCAT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.