pycom05g06080

lipid-transfer protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
7839236 .. 7839556
321 bp
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UTR
Exon/CDS
Intron
pycom05g06080.1

Sequence Viewer

Length: 321 bp
ATGGAAGCATACAGAAAGCTGCTTGTTATTGTGGCATTGTTCTTGGCAGTAGCCATTGGCTCCGACACCTTGATGGCCAACAGCGACCAGAGTTTTTGCCGAATGACGAAAGAGGGTTTGAATGCATGCGCCCCTTCAGTGAACGGAGCAAACCCCCAGCCTCCGTCAGCTCTGTGTTGCACGGCTCTTTCATATGCCGACTTCGGATGCCTTTGCCTTTTCAAGAAGTACTCAAACTTTCTCAGTGCCTATGGAATCGACCCAAACCTTGCCATGCAGCTTCCTGCTAAATGCAACCTTGGCCAGCCCATCCGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

107

Amino Acids

11.35

Weight (kDa)

8.13

Isoelectric Point (pI)

30.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 25 - 103 2.2e-11 Probable lipid transfer
Tryp_alpha_amyl PF00234 33 - 106 7.1e-08 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016256)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 75, 301
AcuI CTGAAG 1 cut(s) 120
AfaI GTAC 1 cut(s) 230
AgsI TTSAA 2 cut(s) 121, 223
AluBI AGCT 3 cut(s) 19, 170, 280
AluI AGCT 3 cut(s) 19, 170, 280
AoxI GGCC 2 cut(s) 75, 301
ApeKI GCWGC 2 cut(s) 19, 277
AspLEI GCGC 1 cut(s) 131
BalI TGGCCA 2 cut(s) 77, 303
BbvI GCAGC 2 cut(s) 6, 289
BccI CCATC 2 cut(s) 67, 317
BceAI ACGGC 1 cut(s) 198
BisI GCNGC 2 cut(s) 20, 278
BlsI GCNGC 2 cut(s) 21, 279
BmcAI AGTACT 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 61
BmsI GCATC 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 298
BseDI CCNNGG 1 cut(s) 298
BseGI GGATG 2 cut(s) 212, 309
BseMII CTCAG 1 cut(s) 256
BseXI GCAGC 2 cut(s) 6, 289
BseYI CCCAGC 1 cut(s) 156
BshFI GGCC 2 cut(s) 77, 303
BsmI GAATGC 1 cut(s) 127
BsnI GGCC 2 cut(s) 77, 303
BspANI GGCC 2 cut(s) 77, 303
BspCNI CTCAG 1 cut(s) 255
BspLI GGNNCC 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 298
BssT1I CCWWGG 1 cut(s) 298
BstC8I GCNNGC 2 cut(s) 127, 305
BstDEI CTNAG 1 cut(s) 242
BstF5I GGATG 2 cut(s) 212, 309
BstHHI GCGC 1 cut(s) 131
BstMWI GCNNNNNNNGC 1 cut(s) 300
BstNSI RCATGY 1 cut(s) 129
BstV1I GCAGC 2 cut(s) 6, 289
BsuRI GGCC 2 cut(s) 77, 303
BtsCI GGATG 2 cut(s) 212, 309
BtsIMutI CAGTG 2 cut(s) 144, 250
Cac8I GCNNGC 2 cut(s) 127, 305
CfoI GCGC 1 cut(s) 131
Csp6I GTAC 1 cut(s) 229
CviAII CATG 2 cut(s) 126, 274
CviQI GTAC 1 cut(s) 229
DdeI CTNAG 1 cut(s) 242
EaeI YGGCCR 2 cut(s) 75, 301
Eco130I CCWWGG 1 cut(s) 298
Eco57I CTGAAG 1 cut(s) 120
EcoT14I CCWWGG 1 cut(s) 298
EcoT22I ATGCAT 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 298
FaeI CATG 2 cut(s) 129, 277
FaiI YATR 6 cut(s) 10, 127, 193, 195, 252, 275
FatI CATG 2 cut(s) 125, 273
FauNDI CATATG 1 cut(s) 193
Fnu4HI GCNGC 2 cut(s) 20, 278
FokI GGATG 2 cut(s) 219, 296
Fsp4HI GCNGC 2 cut(s) 20, 278
GlaI GCGC 1 cut(s) 130
GluI GCNGC 2 cut(s) 20, 278
GsaI CCCAGC 1 cut(s) 160
HaeIII GGCC 2 cut(s) 77, 303
HhaI GCGC 1 cut(s) 131
Hin1II CATG 2 cut(s) 129, 277
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HinfI GANTC 1 cut(s) 255
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 2 cut(s) 64, 206
Hpy188III TCNNGA 1 cut(s) 223
Hpy8I GTNNAC 1 cut(s) 142
HpyAV CCTTC 1 cut(s) 144
HpyCH4V TGCA 4 cut(s) 125, 180, 277, 294
HpyF10VI GCNNNNNNNGC 1 cut(s) 300
HpyF3I CTNAG 1 cut(s) 242
Hsp92II CATG 2 cut(s) 129, 277
HspAI GCGC 1 cut(s) 129
LmnI GCTCC 2 cut(s) 65, 146
LpnPI CCDG 4 cut(s) 101, 170, 297, 317
Lsp1109I GCAGC 2 cut(s) 6, 289
LweI GCATC 1 cut(s) 197
MlsI TGGCCA 2 cut(s) 77, 303
MluNI TGGCCA 2 cut(s) 77, 303
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 2 cut(s) 106, 171
Mox20I TGGCCA 2 cut(s) 77, 303
Mph1103I ATGCAT 1 cut(s) 127
MscI TGGCCA 2 cut(s) 77, 303
MslI CAYNNNNRTG 1 cut(s) 71
Msp20I TGGCCA 2 cut(s) 77, 303
Mva1269I GAATGC 1 cut(s) 127
MwoI GCNNNNNNNGC 1 cut(s) 300
NdeI CATATG 1 cut(s) 193
NlaIII CATG 2 cut(s) 129, 277
NlaIV GGNNCC 1 cut(s) 61
NsiI ATGCAT 1 cut(s) 127
NspI RCATGY 1 cut(s) 129
PaeI GCATGC 1 cut(s) 129
PctI GAATGC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 255
PkrI GCNGC 2 cut(s) 21, 279
PspFI CCCAGC 1 cut(s) 156
PspN4I GGNNCC 1 cut(s) 61
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
RseI CAYNNNNRTG 1 cut(s) 71
SatI GCNGC 2 cut(s) 20, 278
ScaI AGTACT 1 cut(s) 230
SetI ASST 6 cut(s) 21, 71, 172, 270, 282, 300
SfaNI GCATC 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 71
SphI GCATGC 1 cut(s) 129
StyI CCWWGG 1 cut(s) 298
TaqI TCGA 1 cut(s) 258
TatI WGTACW 1 cut(s) 228
TfiI GAWTC 1 cut(s) 255
TscAI CASTG 2 cut(s) 144, 250
TseI GCWGC 2 cut(s) 19, 277
TspDTI ATGAA 1 cut(s) 180
TspGWI ACGGA 3 cut(s) 153, 159, 302
TspRI CASTG 2 cut(s) 144, 250
XceI RCATGY 1 cut(s) 129
ZrmI AGTACT 1 cut(s) 230
Zsp2I ATGCAT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.