Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0015198

Physical Location & Seq

Genomic Coordinates Reverse (-)

10111336 .. 10114566

Gene Structure 3231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g11570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGAAGAGAAAAATGGGCAAGTCGAAAAATCAAGCGATGGCTCCGTCTGTGGCTACGACTCACTTCACCACCTCCTGAGTGCAAATCTCAAACCCCATCTCTTCCAGGAAGTCAACCGTATTCTGTTAGGTCTGAATTGTGGCAAGCCACTAGAAACAATTTCTGTTCCAGAATCTGCTAAAGGGCTCTCGTCGCAACATGATTTTGACCTCCAGGCTTTCTGCTTTCATGCGGACAAAGAGTTGTTAAGGGAACCTCGAATTGTGAGGGTTGGTCTCATTCAAAACTCTATAGCTGTTCCAACTACTGCCCACTTTATGGACCAGAAGAGGGAAATATTTGGGAAATTAAAGCCAATAATTGATGCTGCAGGTGTTTCAGGAGTAAACATTTTATGCTTGCAGGAAGCATGGACAATGCCGTTTGCCTTTTGTACGCGGGAGAAGAGGTGGTGTGAATTTGCGGAGCCTGTAGATGGGGAATCAACACGATTTCTTCAGGATCTTGCACGGAAATATAACATGGTCATCATAAGTCCAATTCTTGAGAGGGATGTCAATCATGGGGAGACTCTCTGGAATACTGCTGTCATAATAGGAAATCATGGCAACATAATTGGCAAGCATCGAAAGAACCATATACCAAGAGTTGGGGACTTCAATGAGAGTACTTATTATATGGAAGGAAATACCGGGCATCCAGTTTTTGAGACTGCATATGGAAAAATTGCGGTAAATATATGTTACGGAAGGCATCATCCTTTGAATTGGTTGGCATTTGGCTTGAATGGTGCAGAGATTGTCTTCAACCCATCTGCCACTGTTGGTGAACTCAGTGAACCAATGTGGCCCATTGAGGCTCGTAATGCTGCAATTGCAAATAGTTTCTTCGTTGGATCAATCAACCGTGTGGGGACAGAGGTTTTCCCAAATCCATTTACTTCTGGTGATGGCAAGCCACAACATTCAGACTTTGGCCATTTCTACGGGTCAAGTTATTTTTCTGCCCCAGATGCCTCATGCACCCCTTCTCTTTCACGCCATTGTGATGGGTTGTTGATGTCAGACATGGACCTCAACCTCTGTAGACAGATAAAAGACAAGTGGGGATTCCGAATGACTGCTCGTTATGAGTTGTACGCCGATCTGCTTGACCGTTATTTGAAGCCAGATTTTGAGCCCCAAGTCATTTCTGATCCCATGTTACATAAGAAGACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003837 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006208 GO:0006212 GO:0006725 GO:0006807 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009605 GO:0009987 GO:0009991 GO:0016787 GO:0016810 GO:0016811 GO:0017144 GO:0019860 GO:0031667 GO:0031668 GO:0031669 GO:0034641 GO:0042737 GO:0043562 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0050896 GO:0051716 GO:0055086 GO:0071496 GO:0071704 GO:0072527 GO:0072529 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00240 ko00410 ko00770 ko00983 ko01100 map00240 map00410 map00770 map00983 map01100

Pfam Domains

Protein Families

CN_hydrolase

Protein Analysis

408

Amino Acids

45.65

Weight (kDa)

6.1

Isoelectric Point (pI)

37.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CN_hydrolase	PF00795	93 - 366	8.9e-55	Carbon-nitrogen hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64370
fragaria_vesca	FvH4_2g11570
malus_domestica	MD05G1048000.v1.1 MD10G1054600.v1.1
prunus_persica	Prupe.8G070200_v2.0.a1
pyrus_communis	pycom10g04150
rosa_chinensis	RchiOBHm_Chr6g0270931
rosa_laevigata	RLG00000013759
rosa_multiflora	Rmu_sc0010958.1_g000001
rosa_roxburghii	Rroxscaffold_7G00197490
rosa_rugosa	Rorug06G0057300
rosa_samantha	Rh6AG176900 Rh6BG180200 Rh6CG176300 Rh6DG168500
rosa_wichuraiana	Rw6G015070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	362
Acc36I	ACCTGC	1 cut(s)	362
AccB7I	CCANNNNNTGG	2 cut(s)	319, 650
AccI	GTMKAC	1 cut(s)	1087
AccII	CGCG	1 cut(s)	439
AciI	CCGC	4 cut(s)	233, 439, 464, 731
AclWI	GGATC	3 cut(s)	510, 904, 1190
AcoI	YGGCCR	1 cut(s)	976
AcsI	RAATTY	1 cut(s)	458
AcuI	CTGAAG	1 cut(s)	482
AfaI	GTAC	3 cut(s)	436, 670, 1139
AfiI	CCNNNNNNNGG	4 cut(s)	319, 331, 476, 650
AgsI	TTSAA	6 cut(s)	284, 661, 766, 787, 808, 1165
AjnI	CCWGG	2 cut(s)	105, 213
AluBI	AGCT	1 cut(s)	296
AluI	AGCT	1 cut(s)	296
Alw26I	GTCTC	3 cut(s)	281, 563, 704
AlwI	GGATC	3 cut(s)	510, 904, 1190
AlwNI	CAGNNNCTG	1 cut(s)	176
AoxI	GGCC	2 cut(s)	848, 976
ApeKI	GCWGC	2 cut(s)	368, 869
ApoI	RAATTY	1 cut(s)	458
AspS9I	GGNCC	3 cut(s)	322, 849, 1072
AsuC2I	CCSGG	1 cut(s)	694
AsuHPI	GGTGA	3 cut(s)	59, 839, 959
AvaII	GGWCC	2 cut(s)	322, 1072
BalI	TGGCCA	1 cut(s)	978
BanII	GRGCYC	2 cut(s)	189, 1182
BbsI	GAAGAC	2 cut(s)	796, 1220
BbvI	GCAGC	2 cut(s)	355, 856
BccI	CCATC	6 cut(s)	32, 105, 470, 820, 944, 1043
BceAI	ACGGC	1 cut(s)	406
BciT130I	CCWGG	2 cut(s)	107, 215
BcnI	CCSGG	1 cut(s)	694
BcoDI	GTCTC	3 cut(s)	281, 563, 704
BfaI	CTAG	1 cut(s)	152
BfmI	CTRYAG	4 cut(s)	291, 369, 471, 1084
BfuAI	ACCTGC	1 cut(s)	362
BisI	GCNGC	2 cut(s)	369, 870
BlsI	GCNGC	2 cut(s)	370, 871
BmcAI	AGTACT	1 cut(s)	670
Bme1390I	CCNGG	3 cut(s)	107, 215, 694
Bme18I	GGWCC	2 cut(s)	322, 1072
BmgT120I	GGNCC	3 cut(s)	322, 849, 1072
BmiI	GGNNCC	3 cut(s)	43, 255, 468
BmrFI	CCNGG	3 cut(s)	107, 215, 694
BmsI	GCATC	5 cut(s)	355, 634, 706, 763, 1003
BpiI	GAAGAC	2 cut(s)	796, 1220
BpmI	CTGGAG	1 cut(s)	197
BpuEI	CTTGAG	1 cut(s)	566
BpuMI	CCSGG	1 cut(s)	694
BsaBI	GATNNNNATC	1 cut(s)	558
BsaI	GGTCTC	1 cut(s)	281
BsaXI	ACNNNNNCTCC	2 cut(s)	434, 464
Bsc4I	CCNNNNNNNGG	4 cut(s)	319, 331, 476, 650
Bse1I	ACTGG	1 cut(s)	701
Bse8I	GATNNNNATC	1 cut(s)	558
BseBI	CCWGG	2 cut(s)	107, 215
BseGI	GGATG	3 cut(s)	559, 697, 757
BseJI	GATNNNNATC	1 cut(s)	558
BseLI	CCNNNNNNNGG	4 cut(s)	319, 331, 476, 650
BseMII	CTCAG	2 cut(s)	68, 847
BseNI	ACTGG	1 cut(s)	701
BseXI	GCAGC	2 cut(s)	355, 856
BsgI	GTGCAG	1 cut(s)	813
Bsh1236I	CGCG	1 cut(s)	439
BshFI	GGCC	2 cut(s)	850, 978
BsiSI	CCGG	1 cut(s)	693
BslFI	GGGAC	2 cut(s)	668, 928
BslI	CCNNNNNNNGG	4 cut(s)	319, 331, 476, 650
BsmAI	GTCTC	3 cut(s)	281, 563, 704
BsmFI	GGGAC	2 cut(s)	668, 928
BsnI	GGCC	2 cut(s)	850, 978
Bso31I	GGTCTC	1 cut(s)	281
Bsp1286I	GDGCHC	2 cut(s)	189, 1182
Bsp143I	GATC	4 cut(s)	502, 896, 1144, 1195
BspACI	CCGC	4 cut(s)	233, 439, 464, 731
BspANI	GGCC	2 cut(s)	850, 978
BspCNI	CTCAG	2 cut(s)	69, 846
BspFNI	CGCG	1 cut(s)	439
BspLI	GGNNCC	3 cut(s)	43, 255, 468
BspMAI	CTGCAG	1 cut(s)	373
BspMI	ACCTGC	1 cut(s)	362
BspPI	GGATC	3 cut(s)	510, 904, 1190
BspTNI	GGTCTC	1 cut(s)	281
BsrI	ACTGG	1 cut(s)	701
BssMI	GATC	4 cut(s)	502, 896, 1144, 1195
Bst2UI	CCWGG	2 cut(s)	107, 215
Bst4CI	ACNGT	4 cut(s)	119, 823, 908, 1157
Bst6I	CTCTTC	3 cut(s)	107, 323, 440
BstC8I	GCNNGC	4 cut(s)	146, 401, 623, 956
BstDEI	CTNAG	2 cut(s)	77, 833
BstF5I	GGATG	3 cut(s)	559, 697, 757
BstFNI	CGCG	1 cut(s)	439
BstKTI	GATC	4 cut(s)	505, 899, 1147, 1198
BstMAI	GTCTC	3 cut(s)	281, 563, 704
BstMBI	GATC	4 cut(s)	502, 896, 1144, 1195
BstMWI	GCNNNNNNNGC	4 cut(s)	193, 866, 875, 1013
BstNI	CCWGG	2 cut(s)	107, 215
BstSCI	CCNGG	3 cut(s)	105, 213, 692
BstSFI	CTRYAG	4 cut(s)	291, 369, 471, 1084
BstUI	CGCG	1 cut(s)	439
BstV1I	GCAGC	2 cut(s)	355, 856
BstV2I	GAAGAC	2 cut(s)	796, 1220
BstX2I	RGATCY	1 cut(s)	502
BstXI	CCANNNNNNTGG	1 cut(s)	1049
BstYI	RGATCY	1 cut(s)	502
BsuRI	GGCC	2 cut(s)	850, 978
BtgZI	GCGATG	1 cut(s)	51
BtsCI	GGATG	3 cut(s)	559, 697, 757
BtsIMutI	CAGTG	2 cut(s)	819, 841
BveI	ACCTGC	1 cut(s)	362
Cac8I	GCNNGC	4 cut(s)	146, 401, 623, 956
CaiI	CAGNNNCTG	1 cut(s)	176
Cfr13I	GGNCC	3 cut(s)	322, 849, 1072
Csp6I	GTAC	3 cut(s)	435, 669, 1138
CviAII	CATG	9 cut(s)	200, 230, 411, 523, 563, 605, 1020, 1069, 1201
CviQI	GTAC	3 cut(s)	435, 669, 1138
DdeI	CTNAG	2 cut(s)	77, 833
DpnI	GATC	4 cut(s)	504, 898, 1146, 1197
DpnII	GATC	4 cut(s)	502, 896, 1144, 1195
EaeI	YGGCCR	1 cut(s)	976
Eam1104I	CTCTTC	3 cut(s)	107, 323, 440
EarI	CTCTTC	3 cut(s)	107, 323, 440
Eco24I	GRGCYC	2 cut(s)	189, 1182
Eco31I	GGTCTC	1 cut(s)	281
Eco47I	GGWCC	2 cut(s)	322, 1072
Eco57I	CTGAAG	1 cut(s)	482
EcoRII	CCWGG	2 cut(s)	105, 213
EcoT38I	GRGCYC	2 cut(s)	189, 1182
FaeI	CATG	9 cut(s)	203, 233, 414, 526, 566, 608, 1023, 1072, 1204
FaqI	GGGAC	2 cut(s)	668, 928
FatI	CATG	9 cut(s)	199, 229, 410, 522, 562, 604, 1019, 1068, 1200
FauI	CCCGC	1 cut(s)	432
FauNDI	CATATG	1 cut(s)	718
FblI	GTMKAC	1 cut(s)	1087
Fnu4HI	GCNGC	2 cut(s)	369, 870
FokI	GGATG	3 cut(s)	566, 684, 744
FriOI	GRGCYC	2 cut(s)	189, 1182
Fsp4HI	GCNGC	2 cut(s)	369, 870
FspBI	CTAG	1 cut(s)	152
GluI	GCNGC	2 cut(s)	369, 870
GsuI	CTGGAG	1 cut(s)	197
HaeIII	GGCC	2 cut(s)	850, 978
HapII	CCGG	1 cut(s)	693
Hin1II	CATG	9 cut(s)	203, 233, 414, 526, 566, 608, 1023, 1072, 1204
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	5 cut(s)	59, 173, 482, 571, 1110
HpaII	CCGG	1 cut(s)	693
HphI	GGTGA	3 cut(s)	59, 839, 959
Hpy166II	GTNNAC	5 cut(s)	115, 388, 830, 839, 1088
Hpy188I	TCNGA	5 cut(s)	135, 970, 1066, 1115, 1195
Hpy188III	TCNNGA	6 cut(s)	76, 170, 381, 500, 545, 577
Hpy8I	GTNNAC	5 cut(s)	115, 388, 830, 839, 1088
Hpy99I	CGWCG	1 cut(s)	196
HpyAV	CCTTC	3 cut(s)	677, 744, 1038
HpyCH4III	ACNGT	4 cut(s)	119, 823, 908, 1157
HpyF10VI	GCNNNNNNNGC	4 cut(s)	193, 866, 875, 1013
HpyF3I	CTNAG	2 cut(s)	77, 833
Hsp92II	CATG	9 cut(s)	203, 233, 414, 526, 566, 608, 1023, 1072, 1204
Kzo9I	GATC	4 cut(s)	502, 896, 1144, 1195
LmnI	GCTCC	2 cut(s)	47, 466
Lsp1109I	GCAGC	2 cut(s)	355, 856
LweI	GCATC	5 cut(s)	355, 634, 706, 763, 1003
MaeI	CTAG	1 cut(s)	152
MaeIII	GTNAC	2 cut(s)	743, 1203
MalI	GATC	4 cut(s)	504, 898, 1146, 1197
MboI	GATC	4 cut(s)	502, 896, 1144, 1195
MboII	GAAGA	7 cut(s)	17, 94, 340, 457, 488, 796, 880
MfeI	CAATTG	1 cut(s)	873
MflI	RGATCY	1 cut(s)	502
MhlI	GDGCHC	2 cut(s)	189, 1182
MlsI	TGGCCA	1 cut(s)	978
MluNI	TGGCCA	1 cut(s)	978
MlyI	GAGTC	2 cut(s)	53, 565
MmeI	TCCRAC	2 cut(s)	326, 874
Mox20I	TGGCCA	1 cut(s)	978
MscI	TGGCCA	1 cut(s)	978
MseI	TTAA	2 cut(s)	248, 350
MslI	CAYNNNNRTG	1 cut(s)	1047
Msp20I	TGGCCA	1 cut(s)	978
MspI	CCGG	1 cut(s)	693
MspR9I	CCNGG	3 cut(s)	107, 215, 694
MunI	CAATTG	1 cut(s)	873
MvaI	CCWGG	2 cut(s)	107, 215
MvnI	CGCG	1 cut(s)	439
MwoI	GCNNNNNNNGC	4 cut(s)	193, 866, 875, 1013
NciI	CCSGG	1 cut(s)	694
NdeI	CATATG	1 cut(s)	718
NdeII	GATC	4 cut(s)	502, 896, 1144, 1195
NlaIII	CATG	9 cut(s)	203, 233, 414, 526, 566, 608, 1023, 1072, 1204
NlaIV	GGNNCC	3 cut(s)	43, 255, 468
PaqCI	CACCTGC	1 cut(s)	362
PfeI	GAWTC	3 cut(s)	173, 482, 1110
PflMI	CCANNNNNTGG	2 cut(s)	319, 650
PfoI	TCCNGGA	1 cut(s)	105
PkrI	GCNGC	2 cut(s)	370, 871
PleI	GAGTC	2 cut(s)	53, 565
PpsI	GAGTC	2 cut(s)	53, 565
Psp6I	CCWGG	2 cut(s)	105, 213
PspGI	CCWGG	2 cut(s)	105, 213
PspN4I	GGNNCC	3 cut(s)	43, 255, 468
PspPI	GGNCC	3 cut(s)	322, 849, 1072
PstI	CTGCAG	1 cut(s)	373
PstNI	CAGNNNCTG	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	502
RsaI	GTAC	3 cut(s)	436, 670, 1139
RsaNI	GTAC	3 cut(s)	435, 669, 1138
RseI	CAYNNNNRTG	1 cut(s)	1047
SaqAI	TTAA	2 cut(s)	248, 350
SatI	GCNGC	2 cut(s)	369, 870
Sau3AI	GATC	4 cut(s)	502, 896, 1144, 1195
Sau96I	GGNCC	3 cut(s)	322, 849, 1072
ScaI	AGTACT	1 cut(s)	670
SchI	GAGTC	2 cut(s)	53, 565
ScrFI	CCNGG	3 cut(s)	107, 215, 694
SduI	GDGCHC	2 cut(s)	189, 1182
SfaNI	GCATC	5 cut(s)	355, 634, 706, 763, 1003
SfcI	CTRYAG	4 cut(s)	291, 369, 471, 1084
SinI	GGWCC	2 cut(s)	322, 1072
SmiMI	CAYNNNNRTG	1 cut(s)	1047
SmlI	CTYRAG	1 cut(s)	545
SmoI	CTYRAG	1 cut(s)	545
SsiI	CCGC	4 cut(s)	233, 439, 464, 731
SspI	AATATT	1 cut(s)	339
SspMI	CTAG	1 cut(s)	152
StyD4I	CCNGG	3 cut(s)	105, 213, 692
TaaI	ACNGT	4 cut(s)	119, 823, 908, 1157
TaqI	TCGA	3 cut(s)	24, 259, 628
TatI	WGTACW	1 cut(s)	668
TfiI	GAWTC	3 cut(s)	173, 482, 1110
Tru1I	TTAA	2 cut(s)	248, 350
Tru9I	TTAA	2 cut(s)	248, 350
TscAI	CASTG	2 cut(s)	826, 841
TseI	GCWGC	2 cut(s)	368, 869
TspDTI	ATGAA	1 cut(s)	218
TspGWI	ACGGA	3 cut(s)	34, 526, 762
TspRI	CASTG	2 cut(s)	826, 841
Van91I	CCANNNNNTGG	2 cut(s)	319, 650
VpaK11BI	GGWCC	2 cut(s)	322, 1072
XapI	RAATTY	1 cut(s)	458
XmiI	GTMKAC	1 cut(s)	1087
XspI	CTAG	1 cut(s)	152
ZrmI	AGTACT	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.