Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010958.1

Orthogroup ID

OG0015198

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 964

Gene Structure 964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010958.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

atggatgagaagaatggtcaagttgaagaatcaagcaaggcgtgcagcgaaggctccgtctgtggctacgactcacttcaccacctcctcagcgcaaatctcaaaccccatctcttccaggaagtcaaccgtattctcttaggtctgaattgtgggaaggcactagaaacaatttctgtcccggaatctgctaaagcgctttcttcggaacatgattttgacctccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003837 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006208 GO:0006212 GO:0006725 GO:0006807 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009605 GO:0009987 GO:0009991 GO:0016787 GO:0016810 GO:0016811 GO:0017144 GO:0019860 GO:0031667 GO:0031668 GO:0031669 GO:0034641 GO:0042737 GO:0043562 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0050896 GO:0051716 GO:0055086 GO:0071496 GO:0071704 GO:0072527 GO:0072529 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00240 ko00410 ko00770 ko00983 ko01100 map00240 map00410 map00770 map00983 map01100

Pfam Domains

Protein Families

CN_hydrolase

Protein Analysis

76

Amino Acids

8.27

Weight (kDa)

4.96

Isoelectric Point (pI)

46.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64370
fragaria_vesca	FvH4_2g11570
malus_domestica	MD05G1048000.v1.1 MD10G1054600.v1.1
prunus_persica	Prupe.8G070200_v2.0.a1
pyrus_communis	pycom10g04150
rosa_chinensis	RchiOBHm_Chr6g0270931
rosa_laevigata	RLG00000013759
rosa_multiflora	Rmu_sc0010958.1_g000001
rosa_roxburghii	Rroxscaffold_7G00197490
rosa_rugosa	Rorug06G0057300
rosa_samantha	Rh6AG176900 Rh6BG180200 Rh6CG176300 Rh6DG168500
rosa_wichuraiana	Rw6G015070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfeI	AGCGCT	1 cut(s)	198
AgsI	TTSAA	1 cut(s)	26
AjnI	CCWGG	1 cut(s)	117
Aor51HI	AGCGCT	1 cut(s)	198
ApeKI	GCWGC	1 cut(s)	45
ArsI	GACNNNNNNTTYG	2 cut(s)	42, 74
AspLEI	GCGC	2 cut(s)	95, 199
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	1 cut(s)	71
BbvCI	CCTCAGC	1 cut(s)	89
BbvI	GCAGC	1 cut(s)	57
BccI	CCATC	1 cut(s)	117
BciT130I	CCWGG	1 cut(s)	119
BcnI	CCSGG	1 cut(s)	182
BfaI	CTAG	1 cut(s)	164
BfoI	RGCGCY	1 cut(s)	200
BisI	GCNGC	1 cut(s)	46
BlsI	GCNGC	1 cut(s)	47
Bme1390I	CCNGG	2 cut(s)	119, 182
BmiI	GGNNCC	1 cut(s)	55
BmrFI	CCNGG	2 cut(s)	119, 182
BpmI	CTGGAG	1 cut(s)	209
Bpu10I	CCTNAGC	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	182
BseBI	CCWGG	1 cut(s)	119
BseGI	GGATG	1 cut(s)	10
BseMII	CTCAG	1 cut(s)	103
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	57
BsgI	GTGCAG	1 cut(s)	64
BsiSI	CCGG	1 cut(s)	182
BslFI	GGGAC	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	164
BspCNI	CTCAG	1 cut(s)	102
BspLI	GGNNCC	1 cut(s)	55
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	1 cut(s)	131
Bst6I	CTCTTC	1 cut(s)	119
BstAPI	GCANNNNNTGC	1 cut(s)	42
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	2 cut(s)	89, 139
BstF5I	GGATG	1 cut(s)	10
BstH2I	RGCGCY	1 cut(s)	200
BstHHI	GCGC	2 cut(s)	95, 199
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 51
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	2 cut(s)	117, 180
BstV1I	GCAGC	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	43
CfoI	GCGC	2 cut(s)	95, 199
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	2 cut(s)	54, 66
CviKI_1	RGCY	2 cut(s)	54, 66
DdeI	CTNAG	2 cut(s)	89, 139
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
Eco47III	AGCGCT	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	117
FaeI	CATG	1 cut(s)	215
FaiI	YATR	1 cut(s)	213
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	46
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	46
FspBI	CTAG	1 cut(s)	164
GlaI	GCGC	2 cut(s)	94, 198
GluI	GCNGC	1 cut(s)	46
GsuI	CTGGAG	1 cut(s)	209
HaeII	RGCGCY	1 cut(s)	200
HapII	CCGG	1 cut(s)	182
HhaI	GCGC	2 cut(s)	95, 199
Hin1II	CATG	1 cut(s)	215
Hin6I	GCGC	2 cut(s)	93, 197
HinP1I	GCGC	2 cut(s)	93, 197
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	3 cut(s)	29, 71, 185
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	2 cut(s)	147, 208
Hpy8I	GTNNAC	1 cut(s)	127
HpyAV	CCTTC	2 cut(s)	44, 151
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4V	TGCA	1 cut(s)	45
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 51
HpyF3I	CTNAG	2 cut(s)	89, 139
Hsp92II	CATG	1 cut(s)	215
HspAI	GCGC	2 cut(s)	93, 197
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	3 cut(s)	104, 131, 195
Lsp1109I	GCAGC	1 cut(s)	57
MaeI	CTAG	1 cut(s)	164
MboII	GAAGA	4 cut(s)	22, 38, 106, 195
MluCI	AATT	2 cut(s)	148, 171
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	2 cut(s)	95, 98
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	2 cut(s)	119, 182
MvaI	CCWGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	2 cut(s)	42, 51
NciI	CCSGG	1 cut(s)	182
NlaIII	CATG	1 cut(s)	215
NlaIV	GGNNCC	1 cut(s)	55
PfeI	GAWTC	2 cut(s)	29, 185
PfoI	TCCNGGA	2 cut(s)	117, 180
PkrI	GCNGC	1 cut(s)	47
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	55
SatI	GCNGC	1 cut(s)	46
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	2 cut(s)	119, 182
SetI	ASST	3 cut(s)	87, 145, 225
Sse9I	AATT	2 cut(s)	148, 171
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	2 cut(s)	117, 180
TaaI	ACNGT	1 cut(s)	131
TasI	AATT	2 cut(s)	148, 171
TfiI	GAWTC	2 cut(s)	29, 185
TseI	GCWGC	1 cut(s)	45
TspGWI	ACGGA	1 cut(s)	46
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.