FvH4_2g13110

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015039
Physical Location & Seq
Reverse (-)
11492094 .. 11495820
3727 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g13110.t1

Sequence Viewer

Length: 1068 bp
ATGGCTAGTACTTTTGCTTCTCTTTGCTCTCTGCTTCTGATCGTTTCTTCTGTTTTAGTTTCTTCCTACTTTGGTGTCTCAGAGGCACAACCCTCTGTTCCTGTAGTTAAAGGGCTATCATGGTCCTTCTATGACTCTAGCTGCCCTAAGCTTGACTCCATTGTAAGGAAGCAGCTCAAGAAGGTCTTCAAGGAAGACATTGGCCAGGCTGCTGGCTTGCTTCGACTCCATTTCCATGACTGCTTTGTTCAGGGATGTGATGGGTCAGTTTTACTGGATGGATCAGCGAGTGGTCCAAGTGAGCAGCAGGCACCTCCAAACCTGAGTTTGAGAGCCAAGGCCTTCCAAATCATCAATGACCTCCGTGAGATTGTTCACAGCAAATGTGGGAGGGTCGTTTCTTGTGCTGATTTAACTGCTCTTGCTGCTAGGGATGCTGTTTTCCTGTCAGGTGGCCCTGAATATGAAGTACCACTGGGAAGAAAGGATGGACTAAACTTTGCAACAAGGAATGAAACCCTTGCTAACCTCCCCGCACCAACAAGCAACACCACAAAACTCCTCACAGATCTTGCCAAGAAAAACTTGGACGCCACTGATGTCGTTGCTCTATCTGGTGGCCACACCATCGGCCTTGGCCACTGCACCTCCTTCACTGGCAGGTTATATCCGACTCAAGATGCTAGTATGGACAAAACTTTTGCCAATGACCTTAAGCAAGTGTGTCCAGCAGCCGACACAAACGCCACAACCGTGCTTGATATCCGCTCGCCTGACACATTCGACAACAAGTACTACGTTGATCTCATGAACCGCCAAGGTCTATTCACATCGGACCAAGATTTGTACACAGATAAAAGAACACGCGACATTGTCACTAGCTTCGCCGTCAACCAGACATTGTTCTTCGAGAAGTTTGTTCATTCCATGATCAAGATGGGGCAATTGAGCGTGCTAACTGGTTCGAAAGGTGAAATTCGCGCTAATTGCTCAATGAGGAACTCAGACAACGCTAATTACTTGAGCTCCGTGGTGGAAGAGGATGAAGAGAGTTTGTCTGAGTTCTAA

Protein Analysis

356

Amino Acids

38.57

Weight (kDa)

5.44

Isoelectric Point (pI)

37.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 55 - 297 1.6e-83 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71695
fragaria_vesca FvH4_2g13110
malus_domestica MD00G1190800.v1.1 MD10G1033300.v1.1
prunus_persica Prupe.8G038900_v2.0.a1
pyrus_communis pycom10g02150
rosa_chinensis RchiOBHm_Chr6g0274401
rosa_laevigata RLG00000013546
rosa_multiflora Rmu_sc0001289.1_g000007
rosa_roxburghii Rroxscaffold_7G00194260
rosa_rugosa Rorug06G0081300
rosa_samantha Rh6AG197400 Rh6BG201100 Rh6CG202000 Rh6DG192600
rosa_wichuraiana Rw6G017200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 651
AccB1I GGYRCC 1 cut(s) 310
AccBSI CCGCTC 1 cut(s) 768
AccII CGCG 2 cut(s) 867, 981
AciI CCGC 3 cut(s) 534, 766, 814
AclWI GGATC 1 cut(s) 289
AcoI YGGCCR 3 cut(s) 202, 619, 637
AcsI RAATTY 1 cut(s) 975
AcyI GRCGYC 1 cut(s) 591
AfaI GTAC 4 cut(s) 10, 471, 794, 848
AfiI CCNNNNNNNGG 1 cut(s) 165
AflII CTTAAG 1 cut(s) 713
AgsI TTSAA 1 cut(s) 190
AjnI CCWGG 1 cut(s) 204
AleI CACNNNNGTG 1 cut(s) 752
AluBI AGCT 5 cut(s) 141, 151, 175, 882, 1026
AluI AGCT 5 cut(s) 141, 151, 175, 882, 1026
Alw21I GWGCWC 1 cut(s) 1028
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 1 cut(s) 289
AoxI GGCC 6 cut(s) 202, 339, 454, 619, 631, 637
ApeKI GCWGC 6 cut(s) 141, 172, 209, 304, 425, 731
ApoI RAATTY 1 cut(s) 975
ArsI GACNNNNNNTTYG 2 cut(s) 683, 715
Asp700I GAANNNNTTC 1 cut(s) 185
AspLEI GCGC 1 cut(s) 983
AspS9I GGNCC 4 cut(s) 123, 293, 455, 835
AsuHPI GGTGA 1 cut(s) 983
AsuII TTCGAA 1 cut(s) 965
AvaII GGWCC 3 cut(s) 123, 293, 835
BalI TGGCCA 3 cut(s) 204, 621, 639
BanI GGYRCC 1 cut(s) 310
BanII GRGCYC 1 cut(s) 1028
BarI GAAGNNNNNNTAC 1 cut(s) 33
BbsI GAAGAC 2 cut(s) 178, 201
Bbv12I GWGCWC 1 cut(s) 1028
BbvI GCAGC 6 cut(s) 128, 184, 196, 316, 412, 743
BccI CCATC 5 cut(s) 254, 272, 482, 635, 931
BceAI ACGGC 1 cut(s) 872
BciT130I CCWGG 1 cut(s) 206
BclI TGATCA 1 cut(s) 930
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 5 cut(s) 6, 138, 429, 684, 879
BfmI CTRYAG 1 cut(s) 102
BfrI CTTAAG 1 cut(s) 713
BfuAI ACCTGC 1 cut(s) 651
BglII AGATCT 1 cut(s) 568
BisI GCNGC 6 cut(s) 142, 173, 210, 305, 426, 732
BlsI GCNGC 6 cut(s) 143, 174, 211, 306, 427, 733
BmcAI AGTACT 2 cut(s) 10, 794
Bme1390I CCNGG 1 cut(s) 206
Bme18I GGWCC 3 cut(s) 123, 293, 835
BmgT120I GGNCC 4 cut(s) 123, 293, 455, 835
BmiI GGNNCC 1 cut(s) 312
BmrFI CCNGG 1 cut(s) 206
BmrI ACTGGG 1 cut(s) 485
BmsI GCATC 2 cut(s) 424, 670
BmuI ACTGGG 1 cut(s) 485
BpiI GAAGAC 2 cut(s) 178, 201
Bpu10I CCTNAGC 1 cut(s) 147
Bpu14I TTCGAA 1 cut(s) 965
BpuEI CTTGAG 3 cut(s) 161, 660, 1042
BsaHI GRCGYC 1 cut(s) 591
BsaJI CCNNGG 4 cut(s) 336, 634, 817, 1029
BsaXI ACNNNNNCTCC 4 cut(s) 632, 662, 1010, 1040
Bsc4I CCNNNNNNNGG 1 cut(s) 165
Bse1I ACTGG 4 cut(s) 279, 480, 661, 964
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 4 cut(s) 336, 634, 817, 1029
BseGI GGATG 5 cut(s) 260, 283, 439, 493, 1048
BseLI CCNNNNNNNGG 1 cut(s) 165
BseMII CTCAG 4 cut(s) 93, 314, 1017, 1050
BseNI ACTGG 4 cut(s) 279, 480, 661, 964
BseRI GAGGAG 1 cut(s) 551
BseXI GCAGC 6 cut(s) 128, 184, 196, 316, 412, 743
BsgI GTGCAG 1 cut(s) 628
Bsh1236I CGCG 2 cut(s) 867, 981
BshFI GGCC 6 cut(s) 204, 341, 456, 621, 633, 639
BshNI GGYRCC 1 cut(s) 310
BsiHKAI GWGCWC 1 cut(s) 1028
BslI CCNNNNNNNGG 1 cut(s) 165
BsmAI GTCTC 1 cut(s) 82
BsnI GGCC 6 cut(s) 204, 341, 456, 621, 633, 639
Bsp119I TTCGAA 1 cut(s) 965
Bsp1286I GDGCHC 1 cut(s) 1028
Bsp1407I TGTACA 1 cut(s) 846
Bsp143I GATC 5 cut(s) 39, 281, 568, 802, 930
BspACI CCGC 3 cut(s) 534, 766, 814
BspANI GGCC 6 cut(s) 204, 341, 456, 621, 633, 639
BspCNI CTCAG 4 cut(s) 92, 315, 1016, 1051
BspFNI CGCG 2 cut(s) 867, 981
BspHI TCATGA 1 cut(s) 807
BspLI GGNNCC 1 cut(s) 312
BspMI ACCTGC 1 cut(s) 651
BspPI GGATC 1 cut(s) 289
BspT104I TTCGAA 1 cut(s) 965
BspT107I GGYRCC 1 cut(s) 310
BspTI CTTAAG 1 cut(s) 713
BsrBI CCGCTC 1 cut(s) 768
BsrGI TGTACA 1 cut(s) 846
BsrI ACTGG 4 cut(s) 279, 480, 661, 964
BssECI CCNNGG 4 cut(s) 336, 634, 817, 1029
BssMI GATC 5 cut(s) 39, 281, 568, 802, 930
BssNI GRCGYC 1 cut(s) 591
BssT1I CCWWGG 3 cut(s) 336, 634, 817
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 1 cut(s) 754
Bst6I CTCTTC 2 cut(s) 1032, 1041
BstACI GRCGYC 1 cut(s) 591
BstAFI CTTAAG 1 cut(s) 713
BstAUI TGTACA 1 cut(s) 846
BstBI TTCGAA 1 cut(s) 965
BstC8I GCNNGC 5 cut(s) 214, 218, 309, 770, 953
BstDEI CTNAG 5 cut(s) 79, 147, 323, 1003, 1059
BstDSI CCRYGG 1 cut(s) 1029
BstF5I GGATG 5 cut(s) 260, 283, 439, 493, 1048
BstFNI CGCG 2 cut(s) 867, 981
BstHHI GCGC 1 cut(s) 983
BstKTI GATC 5 cut(s) 42, 284, 571, 805, 933
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 5 cut(s) 39, 281, 568, 802, 930
BstMWI GCNNNNNNNGC 3 cut(s) 425, 434, 987
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 204
BstSFI CTRYAG 1 cut(s) 102
BstUI CGCG 2 cut(s) 867, 981
BstV1I GCAGC 6 cut(s) 128, 184, 196, 316, 412, 743
BstV2I GAAGAC 2 cut(s) 178, 201
BstX2I RGATCY 1 cut(s) 568
BstXI CCANNNNNNTGG 1 cut(s) 212
BstYI RGATCY 1 cut(s) 568
BsuRI GGCC 6 cut(s) 204, 341, 456, 621, 633, 639
BtgI CCRYGG 1 cut(s) 1029
BtsCI GGATG 5 cut(s) 260, 283, 439, 493, 1048
BtsI GCAGTG 1 cut(s) 640
BtsIMutI CAGTG 4 cut(s) 473, 594, 640, 654
BveI ACCTGC 1 cut(s) 651
Cac8I GCNNGC 5 cut(s) 214, 218, 309, 770, 953
CciI TCATGA 1 cut(s) 807
CfoI GCGC 1 cut(s) 983
Cfr13I GGNCC 4 cut(s) 123, 293, 455, 835
CseI GACGC 1 cut(s) 599
Csp6I GTAC 4 cut(s) 9, 470, 793, 847
CviAII CATG 4 cut(s) 120, 236, 808, 928
CviQI GTAC 4 cut(s) 9, 470, 793, 847
DdeI CTNAG 5 cut(s) 79, 147, 323, 1003, 1059
DpnI GATC 5 cut(s) 41, 283, 570, 804, 932
DpnII GATC 5 cut(s) 39, 281, 568, 802, 930
EaeI YGGCCR 3 cut(s) 202, 619, 637
Eam1104I CTCTTC 2 cut(s) 1032, 1041
EarI CTCTTC 2 cut(s) 1032, 1041
Ecl136II GAGCTC 1 cut(s) 1026
Eco130I CCWWGG 3 cut(s) 336, 634, 817
Eco147I AGGCCT 1 cut(s) 341
Eco24I GRGCYC 1 cut(s) 1028
Eco32I GATATC 1 cut(s) 763
Eco47I GGWCC 3 cut(s) 123, 293, 835
Eco53kI GAGCTC 1 cut(s) 1026
EcoICRI GAGCTC 1 cut(s) 1026
EcoRII CCWGG 1 cut(s) 204
EcoRV GATATC 1 cut(s) 763
EcoT14I CCWWGG 3 cut(s) 336, 634, 817
EcoT38I GRGCYC 1 cut(s) 1028
ErhI CCWWGG 3 cut(s) 336, 634, 817
FaeI CATG 4 cut(s) 123, 239, 811, 931
FaiI YATR 8 cut(s) 121, 132, 237, 465, 667, 689, 809, 929
FalI AAGNNNNNCTT 4 cut(s) 170, 202, 569, 601
FatI CATG 4 cut(s) 119, 235, 807, 927
FauI CCCGC 1 cut(s) 541
FbaI TGATCA 1 cut(s) 930
Fnu4HI GCNGC 6 cut(s) 142, 173, 210, 305, 426, 732
FokI GGATG 5 cut(s) 267, 290, 446, 500, 1055
FriOI GRGCYC 1 cut(s) 1028
Fsp4HI GCNGC 6 cut(s) 142, 173, 210, 305, 426, 732
FspBI CTAG 5 cut(s) 6, 138, 429, 684, 879
GlaI GCGC 1 cut(s) 982
GluI GCNGC 6 cut(s) 142, 173, 210, 305, 426, 732
HaeIII GGCC 6 cut(s) 204, 341, 456, 621, 633, 639
HgaI GACGC 1 cut(s) 599
HhaI GCGC 1 cut(s) 983
Hin1I GRCGYC 1 cut(s) 591
Hin1II CATG 4 cut(s) 123, 239, 811, 931
Hin6I GCGC 1 cut(s) 981
HinP1I GCGC 1 cut(s) 981
HincII GTYRAC 1 cut(s) 892
HindII GTYRAC 1 cut(s) 892
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 4 cut(s) 134, 155, 225, 673
HphI GGTGA 1 cut(s) 983
Hpy166II GTNNAC 3 cut(s) 376, 849, 892
Hpy188I TCNGA 6 cut(s) 39, 82, 672, 835, 1006, 1060
Hpy188III TCNNGA 5 cut(s) 178, 677, 808, 910, 934
Hpy8I GTNNAC 3 cut(s) 376, 849, 892
HpyAV CCTTC 4 cut(s) 136, 175, 352, 661
HpyCH4III ACNGT 1 cut(s) 754
HpyCH4IV ACGT 1 cut(s) 798
HpyCH4V TGCA 2 cut(s) 503, 645
HpyF10VI GCNNNNNNNGC 3 cut(s) 425, 434, 987
HpyF3I CTNAG 5 cut(s) 79, 147, 323, 1003, 1059
HpySE526I ACGT 1 cut(s) 798
Hsp92I GRCGYC 1 cut(s) 591
Hsp92II CATG 4 cut(s) 123, 239, 811, 931
HspAI GCGC 1 cut(s) 981
Ksp22I TGATCA 1 cut(s) 930
Kzo9I GATC 5 cut(s) 39, 281, 568, 802, 930
LmnI GCTCC 1 cut(s) 1031
Lsp1109I GCAGC 6 cut(s) 128, 184, 196, 316, 412, 743
LweI GCATC 2 cut(s) 424, 670
MaeI CTAG 5 cut(s) 6, 138, 429, 684, 879
MaeII ACGT 1 cut(s) 798
MaeIII GTNAC 1 cut(s) 874
MalI GATC 5 cut(s) 41, 283, 570, 804, 932
MbiI CCGCTC 1 cut(s) 768
MboI GATC 5 cut(s) 39, 281, 568, 802, 930
MboII GAAGA 8 cut(s) 39, 54, 178, 206, 492, 898, 1049, 1058
MfeI CAATTG 1 cut(s) 944
MflI RGATCY 1 cut(s) 568
MhlI GDGCHC 1 cut(s) 1028
MlsI TGGCCA 3 cut(s) 204, 621, 639
MluCI AATT 4 cut(s) 944, 975, 985, 1015
MluNI TGGCCA 3 cut(s) 204, 621, 639
MlyI GAGTC 4 cut(s) 128, 149, 219, 667
MmeI TCCRAC 1 cut(s) 695
Mox20I TGGCCA 3 cut(s) 204, 621, 639
MroXI GAANNNNTTC 1 cut(s) 185
MscI TGGCCA 3 cut(s) 204, 621, 639
MseI TTAA 3 cut(s) 108, 413, 714
MslI CAYNNNNRTG 2 cut(s) 234, 752
Msp20I TGGCCA 3 cut(s) 204, 621, 639
MspCI CTTAAG 1 cut(s) 713
MspR9I CCNGG 1 cut(s) 206
MunI CAATTG 1 cut(s) 944
MvaI CCWGG 1 cut(s) 206
MvnI CGCG 2 cut(s) 867, 981
MwoI GCNNNNNNNGC 3 cut(s) 425, 434, 987
NdeII GATC 5 cut(s) 39, 281, 568, 802, 930
NlaIII CATG 4 cut(s) 123, 239, 811, 931
NlaIV GGNNCC 1 cut(s) 312
NmuCI GTSAC 1 cut(s) 874
NspV TTCGAA 1 cut(s) 965
OliI CACNNNNGTG 1 cut(s) 752
PagI TCATGA 1 cut(s) 807
PceI AGGCCT 1 cut(s) 341
PcsI WCGNNNNNNNCGW 1 cut(s) 750
PdmI GAANNNNTTC 1 cut(s) 185
PflFI GACNNNGTC 1 cut(s) 872
PkrI GCNGC 6 cut(s) 143, 174, 211, 306, 427, 733
PleI GAGTC 4 cut(s) 128, 149, 219, 667
PpsI GAGTC 4 cut(s) 128, 149, 219, 667
Psp124BI GAGCTC 1 cut(s) 1028
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 312
PspPI GGNCC 4 cut(s) 123, 293, 455, 835
PsuI RGATCY 1 cut(s) 568
PsyI GACNNNGTC 1 cut(s) 872
RsaI GTAC 4 cut(s) 10, 471, 794, 848
RsaNI GTAC 4 cut(s) 9, 470, 793, 847
RseI CAYNNNNRTG 2 cut(s) 234, 752
SacI GAGCTC 1 cut(s) 1028
SaqAI TTAA 3 cut(s) 108, 413, 714
SatI GCNGC 6 cut(s) 142, 173, 210, 305, 426, 732
Sau3AI GATC 5 cut(s) 39, 281, 568, 802, 930
Sau96I GGNCC 4 cut(s) 123, 293, 455, 835
ScaI AGTACT 2 cut(s) 10, 794
SchI GAGTC 4 cut(s) 128, 149, 219, 667
ScrFI CCNGG 1 cut(s) 206
SduI GDGCHC 1 cut(s) 1028
SfaNI GCATC 2 cut(s) 424, 670
SfcI CTRYAG 1 cut(s) 102
SfuI TTCGAA 1 cut(s) 965
SinI GGWCC 3 cut(s) 123, 293, 835
SmiMI CAYNNNNRTG 2 cut(s) 234, 752
SmlI CTYRAG 4 cut(s) 176, 675, 713, 1021
SmoI CTYRAG 4 cut(s) 176, 675, 713, 1021
Sse9I AATT 4 cut(s) 944, 975, 985, 1015
SseBI AGGCCT 1 cut(s) 341
SsiI CCGC 3 cut(s) 534, 766, 814
SspMI CTAG 5 cut(s) 6, 138, 429, 684, 879
SstI GAGCTC 1 cut(s) 1028
StuI AGGCCT 1 cut(s) 341
StyD4I CCNGG 1 cut(s) 204
StyI CCWWGG 3 cut(s) 336, 634, 817
TaaI ACNGT 1 cut(s) 754
TaiI ACGT 1 cut(s) 801
TaqI TCGA 4 cut(s) 223, 783, 909, 965
TasI AATT 4 cut(s) 944, 975, 985, 1015
TatI WGTACW 3 cut(s) 8, 792, 846
Tru1I TTAA 3 cut(s) 108, 413, 714
Tru9I TTAA 3 cut(s) 108, 413, 714
TscAI CASTG 4 cut(s) 480, 601, 647, 661
TseFI GTSAC 1 cut(s) 874
TseI GCWGC 6 cut(s) 141, 172, 209, 304, 425, 731
Tsp45I GTSAC 1 cut(s) 874
TspDTI ATGAA 5 cut(s) 480, 528, 824, 911, 1059
TspGWI ACGGA 2 cut(s) 353, 1018
TspRI CASTG 4 cut(s) 480, 601, 647, 661
Tth111I GACNNNGTC 1 cut(s) 872
Vha464I CTTAAG 1 cut(s) 713
VpaK11BI GGWCC 3 cut(s) 123, 293, 835
XapI RAATTY 1 cut(s) 975
XcmI CCANNNNNNNNNTGG 2 cut(s) 583, 934
XmnI GAANNNNTTC 1 cut(s) 185
XspI CTAG 5 cut(s) 6, 138, 429, 684, 879
ZrmI AGTACT 2 cut(s) 10, 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.