MD00G1190800.v1.1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0015039
Physical Location & Seq
Reverse (-)
45942353 .. 45946366
4014 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1190800.v1.1.491

Sequence Viewer

Length: 1050 bp
ATGGCTTCATTAACCTCTCTGCTTCTGGTTTCATCTCTTTTCCTTTCTTCCTTCTTTTGTGTCTCGGAGGCACAGTCCTCTGCCCCCGTGGTTCAAGGACTTTCATGGAACTTCTATGAGTCTAGCTGCCCTAAGGTTGACGACATAGTCCGAAAGCAGCTTAAGAAAGTCTTCAAAGCGGACATTGGCCAAGCTGCTGGCTTGCTCCGTCTCCATTTCCACGATTGTTTTGTTCAGGGTTGTGATGGATCTGTGTTGCTTGAGGGATCAGCCAGCGGACCAAGTGAGCAGGATGCACCTCCCAACCTAAGCTTGAGGGCGAAGGCCTTTGAGATCATCAATGACCTCCGCGACCGCGTTCACAAGAAGTGTGGAAGGGTCGTCTCTTGTTCTGATATCGTCGCCCTCGCTGCTAGGGATTCTGTTTTCCTGTCAGGTGGCCCGGACTATGATGTGCCCTTGGGAAGAAAGGATGGACTAAACTTTGCCACACAAAATGCAACCCTAGCAAACCTTCCCGGACCAACCAGTAACACAACCAAGCTTCTAACAGATCTTGCCAAGAAAAACTTAGATGCCACTGATGTTGTAGCCCTGTCTGGAGGTCACACCATTGGCCTCAGCCATTGTTCCTCCTTCACCGGCAGGCTCTATCCGACGCAAGATGCTACCATGGACAAAACCTTTGCAAATGACCTCAAAACAGTTTGCCCTGCAAGCGATACTAACGCTACCGTCCCGCAAGATATCCGTACCCCTGACATATTCGACAACAAGTACTATGTTGATCTCATGAACCGCCAAGGTTTATTCACGTCGGACCAAGATTTGTACACCGATAAGAGGACTAAGGAAATTGTGAAAAGCTTTGCCGTTAACCAGACCTTGTTCTTTGAGCAGTTTGTCAAGTCCATGATCAAGATGGGGCAACTTAGCGTGTTGACTGGCTCCAAGGGCGAAATTCGTGCAGATTGCTCGGTCAGGAATTCGGACAATGCTAACTACTTGGCCTCTGTGGTGGAAGATGATGAGAGCTTGTCTGAGTTTTAA

Protein Analysis

350

Amino Acids

37.95

Weight (kDa)

5.32

Isoelectric Point (pI)

32.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 50 - 292 1.8e-84 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71695
fragaria_vesca FvH4_2g13110
malus_domestica MD00G1190800.v1.1 MD10G1033300.v1.1
prunus_persica Prupe.8G038900_v2.0.a1
pyrus_communis pycom10g02150
rosa_chinensis RchiOBHm_Chr6g0274401
rosa_laevigata RLG00000013546
rosa_multiflora Rmu_sc0001289.1_g000007
rosa_roxburghii Rroxscaffold_7G00194260
rosa_rugosa Rorug06G0081300
rosa_samantha Rh6AG197400 Rh6BG201100 Rh6CG202000 Rh6DG192600
rosa_wichuraiana Rw6G017200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 146
AccII CGCG 2 cut(s) 351, 357
AciI CCGC 6 cut(s) 179, 276, 349, 355, 740, 799
AclWI GGATC 2 cut(s) 256, 274
AcoI YGGCCR 1 cut(s) 187
AcsI RAATTY 2 cut(s) 960, 985
AfaI GTAC 3 cut(s) 754, 779, 833
AfiI CCNNNNNNNGG 1 cut(s) 843
AflII CTTAAG 1 cut(s) 161
AgsI TTSAA 2 cut(s) 95, 175
AjiI CACGTC 1 cut(s) 816
AluBI AGCT 7 cut(s) 126, 160, 194, 312, 544, 867, 1035
AluI AGCT 7 cut(s) 126, 160, 194, 312, 544, 867, 1035
Alw26I GTCTC 3 cut(s) 67, 215, 388
AlwI GGATC 2 cut(s) 256, 274
AoxI GGCC 5 cut(s) 187, 324, 439, 616, 1008
ApeKI GCWGC 4 cut(s) 126, 157, 194, 410
ApoI RAATTY 2 cut(s) 960, 985
ArsI GACNNNNNNTTYG 2 cut(s) 668, 700
Asp700I GAANNNNTTC 1 cut(s) 170
AspS9I GGNCC 4 cut(s) 278, 440, 521, 820
AsuC2I CCSGG 2 cut(s) 443, 519
AsuHPI GGTGA 1 cut(s) 631
AvaII GGWCC 3 cut(s) 278, 521, 820
AxyI CCTNAGG 1 cut(s) 132
BaeGI GKGCMC 1 cut(s) 459
BalI TGGCCA 1 cut(s) 189
BbsI GAAGAC 1 cut(s) 163
BbvCI CCTCAGC 1 cut(s) 620
BbvI GCAGC 4 cut(s) 113, 169, 181, 397
BccI CCATC 3 cut(s) 239, 467, 916
BceAI ACGGC 1 cut(s) 857
BcgI CGANNNNNNTGC 4 cut(s) 947, 957, 981, 991
BclI TGATCA 1 cut(s) 915
BcnI CCSGG 2 cut(s) 443, 519
BcoDI GTCTC 3 cut(s) 67, 215, 388
BfaI CTAG 3 cut(s) 123, 414, 506
BfrI CTTAAG 1 cut(s) 161
BglII AGATCT 1 cut(s) 553
BisI GCNGC 4 cut(s) 127, 158, 195, 411
BlsI GCNGC 4 cut(s) 128, 159, 196, 412
BmcAI AGTACT 1 cut(s) 779
Bme1390I CCNGG 2 cut(s) 443, 519
Bme18I GGWCC 3 cut(s) 278, 521, 820
BmgBI CACGTC 1 cut(s) 816
BmgT120I GGNCC 4 cut(s) 278, 440, 521, 820
BmiI GGNNCC 1 cut(s) 949
BmrFI CCNGG 2 cut(s) 443, 519
BmsI GCATC 3 cut(s) 283, 565, 655
BpiI GAAGAC 1 cut(s) 163
BpmI CTGGAG 1 cut(s) 621
Bpu10I CCTNAGC 2 cut(s) 308, 620
BpuEI CTTGAG 2 cut(s) 281, 334
BpuMI CCSGG 2 cut(s) 443, 519
BsaJI CCNNGG 5 cut(s) 87, 459, 672, 802, 951
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 1 cut(s) 843
Bse118I RCCGGY 1 cut(s) 641
Bse1I ACTGG 2 cut(s) 528, 949
Bse21I CCTNAGG 1 cut(s) 132
BseDI CCNNGG 5 cut(s) 87, 459, 672, 802, 951
BseGI GGATG 2 cut(s) 298, 478
BseLI CCNNNNNNNGG 1 cut(s) 843
BseMII CTCAG 2 cut(s) 634, 1032
BseNI ACTGG 2 cut(s) 528, 949
BseSI GKGCMC 1 cut(s) 459
BseXI GCAGC 4 cut(s) 113, 169, 181, 397
BsgI GTGCAG 1 cut(s) 987
Bsh1236I CGCG 2 cut(s) 351, 357
Bsh1285I CGRYCG 1 cut(s) 355
BshFI GGCC 5 cut(s) 189, 326, 441, 618, 1010
BsiEI CGRYCG 1 cut(s) 355
BsiSI CCGG 3 cut(s) 443, 519, 642
BslFI GGGAC 1 cut(s) 722
BslI CCNNNNNNNGG 1 cut(s) 843
BsmAI GTCTC 3 cut(s) 67, 215, 388
BsmBI CGTCTC 2 cut(s) 215, 388
BsmFI GGGAC 1 cut(s) 722
BsnI GGCC 5 cut(s) 189, 326, 441, 618, 1010
Bsp1286I GDGCHC 1 cut(s) 459
Bsp1407I TGTACA 1 cut(s) 831
Bsp143I GATC 6 cut(s) 248, 266, 333, 553, 787, 915
Bsp19I CCATGG 1 cut(s) 672
BspACI CCGC 6 cut(s) 179, 276, 349, 355, 740, 799
BspANI GGCC 5 cut(s) 189, 326, 441, 618, 1010
BspCNI CTCAG 2 cut(s) 633, 1033
BspFNI CGCG 2 cut(s) 351, 357
BspHI TCATGA 1 cut(s) 792
BspLI GGNNCC 1 cut(s) 949
BspPI GGATC 2 cut(s) 256, 274
BspTI CTTAAG 1 cut(s) 161
BsrFI RCCGGY 1 cut(s) 641
BsrGI TGTACA 1 cut(s) 831
BsrI ACTGG 2 cut(s) 528, 949
BssAI RCCGGY 1 cut(s) 641
BssECI CCNNGG 5 cut(s) 87, 459, 672, 802, 951
BssMI GATC 6 cut(s) 248, 266, 333, 553, 787, 915
BssT1I CCWWGG 4 cut(s) 459, 672, 802, 951
Bst4CI ACNGT 3 cut(s) 75, 706, 736
BstAFI CTTAAG 1 cut(s) 161
BstAUI TGTACA 1 cut(s) 831
BstC8I GCNNGC 5 cut(s) 199, 203, 274, 647, 718
BstDEI CTNAG 7 cut(s) 132, 308, 571, 620, 849, 932, 1041
BstDSI CCRYGG 2 cut(s) 87, 672
BstF5I GGATG 2 cut(s) 298, 478
BstFNI CGCG 2 cut(s) 351, 357
BstKTI GATC 6 cut(s) 251, 269, 336, 556, 790, 918
BstMAI GTCTC 3 cut(s) 67, 215, 388
BstMBI GATC 6 cut(s) 248, 266, 333, 553, 787, 915
BstMCI CGRYCG 1 cut(s) 355
BstMWI GCNNNNNNNGC 4 cut(s) 410, 506, 717, 954
BstSCI CCNGG 2 cut(s) 441, 517
BstSLI GKGCMC 1 cut(s) 459
BstUI CGCG 2 cut(s) 351, 357
BstV1I GCAGC 4 cut(s) 113, 169, 181, 397
BstV2I GAAGAC 1 cut(s) 163
BstX2I RGATCY 2 cut(s) 248, 553
BstXI CCANNNNNNTGG 1 cut(s) 197
BstYI RGATCY 2 cut(s) 248, 553
Bsu36I CCTNAGG 1 cut(s) 132
BsuRI GGCC 5 cut(s) 189, 326, 441, 618, 1010
BtgI CCRYGG 2 cut(s) 87, 672
BtrI CACGTC 1 cut(s) 816
BtsCI GGATG 2 cut(s) 298, 478
BtsIMutI CAGTG 1 cut(s) 579
Cac8I GCNNGC 5 cut(s) 199, 203, 274, 647, 718
CciI TCATGA 1 cut(s) 792
Cfr10I RCCGGY 1 cut(s) 641
Cfr13I GGNCC 4 cut(s) 278, 440, 521, 820
CseI GACGC 1 cut(s) 667
Csp6I GTAC 3 cut(s) 753, 778, 832
CspCI CAANNNNNGTGG 4 cut(s) 352, 387, 568, 603
CviAII CATG 4 cut(s) 105, 673, 793, 913
CviQI GTAC 3 cut(s) 753, 778, 832
DdeI CTNAG 7 cut(s) 132, 308, 571, 620, 849, 932, 1041
DpnI GATC 6 cut(s) 250, 268, 335, 555, 789, 917
DpnII GATC 6 cut(s) 248, 266, 333, 553, 787, 915
DrdI GACNNNNNNGTC 1 cut(s) 146
DseDI GACNNNNNNGTC 1 cut(s) 146
EaeI YGGCCR 1 cut(s) 187
Eco130I CCWWGG 4 cut(s) 459, 672, 802, 951
Eco147I AGGCCT 1 cut(s) 326
Eco32I GATATC 2 cut(s) 397, 748
Eco47I GGWCC 3 cut(s) 278, 521, 820
Eco81I CCTNAGG 1 cut(s) 132
EcoRI GAATTC 1 cut(s) 985
EcoRV GATATC 2 cut(s) 397, 748
EcoT14I CCWWGG 4 cut(s) 459, 672, 802, 951
ErhI CCWWGG 4 cut(s) 459, 672, 802, 951
Esp3I CGTCTC 2 cut(s) 215, 388
FaeI CATG 4 cut(s) 108, 676, 796, 916
FaiI YATR 9 cut(s) 106, 117, 146, 450, 674, 764, 783, 794, 914
FalI AAGNNNNNCTT 4 cut(s) 155, 187, 554, 586
FaqI GGGAC 1 cut(s) 722
FatI CATG 4 cut(s) 104, 672, 792, 912
FauI CCCGC 1 cut(s) 747
FbaI TGATCA 1 cut(s) 915
Fnu4HI GCNGC 4 cut(s) 127, 158, 195, 411
FokI GGATG 2 cut(s) 305, 485
Fsp4HI GCNGC 4 cut(s) 127, 158, 195, 411
FspBI CTAG 3 cut(s) 123, 414, 506
GluI GCNGC 4 cut(s) 127, 158, 195, 411
GsuI CTGGAG 1 cut(s) 621
HaeIII GGCC 5 cut(s) 189, 326, 441, 618, 1010
HapII CCGG 3 cut(s) 443, 519, 642
HgaI GACGC 1 cut(s) 667
Hin1II CATG 4 cut(s) 108, 676, 796, 916
HincII GTYRAC 3 cut(s) 139, 877, 942
HindII GTYRAC 3 cut(s) 139, 877, 942
HindIII AAGCTT 3 cut(s) 310, 542, 865
HinfI GANTC 2 cut(s) 119, 419
HpaI GTTAAC 1 cut(s) 877
HpaII CCGG 3 cut(s) 443, 519, 642
HphI GGTGA 1 cut(s) 631
Hpy166II GTNNAC 5 cut(s) 139, 361, 834, 877, 942
Hpy188I TCNGA 7 cut(s) 67, 152, 394, 657, 820, 991, 1042
Hpy188III TCNNGA 4 cut(s) 600, 793, 919, 982
Hpy8I GTNNAC 5 cut(s) 139, 361, 834, 877, 942
Hpy99I CGWCG 3 cut(s) 404, 661, 820
HpyAV CCTTC 5 cut(s) 61, 316, 369, 524, 646
HpyCH4III ACNGT 3 cut(s) 75, 706, 736
HpyCH4IV ACGT 1 cut(s) 815
HpyCH4V TGCA 5 cut(s) 296, 500, 689, 716, 968
HpyF10VI GCNNNNNNNGC 4 cut(s) 410, 506, 717, 954
HpyF3I CTNAG 7 cut(s) 132, 308, 571, 620, 849, 932, 1041
HpySE526I ACGT 1 cut(s) 815
Hsp92II CATG 4 cut(s) 108, 676, 796, 916
Ksp22I TGATCA 1 cut(s) 915
KspAI GTTAAC 1 cut(s) 877
Kzo9I GATC 6 cut(s) 248, 266, 333, 553, 787, 915
LmnI GCTCC 2 cut(s) 210, 953
Lsp1109I GCAGC 4 cut(s) 113, 169, 181, 397
LweI GCATC 3 cut(s) 283, 565, 655
MaeI CTAG 3 cut(s) 123, 414, 506
MaeII ACGT 1 cut(s) 815
MaeIII GTNAC 2 cut(s) 530, 605
MalI GATC 6 cut(s) 250, 268, 335, 555, 789, 917
MboI GATC 6 cut(s) 248, 266, 333, 553, 787, 915
MboII GAAGA 4 cut(s) 39, 163, 477, 1034
MflI RGATCY 2 cut(s) 248, 553
MhlI GDGCHC 1 cut(s) 459
MlsI TGGCCA 1 cut(s) 189
MluCI AATT 3 cut(s) 855, 960, 985
MluNI TGGCCA 1 cut(s) 189
MlyI GAGTC 1 cut(s) 128
MmeI TCCRAC 2 cut(s) 680, 798
Mox20I TGGCCA 1 cut(s) 189
MroXI GAANNNNTTC 1 cut(s) 170
MscI TGGCCA 1 cut(s) 189
MseI TTAA 4 cut(s) 11, 162, 876, 1048
Msp20I TGGCCA 1 cut(s) 189
MspA1I CMGCKG 1 cut(s) 276
MspCI CTTAAG 1 cut(s) 161
MspI CCGG 3 cut(s) 443, 519, 642
MspR9I CCNGG 2 cut(s) 443, 519
MvnI CGCG 2 cut(s) 351, 357
MwoI GCNNNNNNNGC 4 cut(s) 410, 506, 717, 954
NciI CCSGG 2 cut(s) 443, 519
NcoI CCATGG 1 cut(s) 672
NdeII GATC 6 cut(s) 248, 266, 333, 553, 787, 915
NlaIII CATG 4 cut(s) 108, 676, 796, 916
NlaIV GGNNCC 1 cut(s) 949
NmuCI GTSAC 1 cut(s) 605
PagI TCATGA 1 cut(s) 792
PceI AGGCCT 1 cut(s) 326
PdmI GAANNNNTTC 1 cut(s) 170
PfeI GAWTC 1 cut(s) 419
PflFI GACNNNGTC 1 cut(s) 146
PfoI TCCNGGA 1 cut(s) 517
PkrI GCNGC 4 cut(s) 128, 159, 196, 412
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 949
PspPI GGNCC 4 cut(s) 278, 440, 521, 820
PsuI RGATCY 2 cut(s) 248, 553
PsyI GACNNNGTC 1 cut(s) 146
RsaI GTAC 3 cut(s) 754, 779, 833
RsaNI GTAC 3 cut(s) 753, 778, 832
SaqAI TTAA 4 cut(s) 11, 162, 876, 1048
SatI GCNGC 4 cut(s) 127, 158, 195, 411
Sau3AI GATC 6 cut(s) 248, 266, 333, 553, 787, 915
Sau96I GGNCC 4 cut(s) 278, 440, 521, 820
ScaI AGTACT 1 cut(s) 779
SchI GAGTC 1 cut(s) 128
ScrFI CCNGG 2 cut(s) 443, 519
SduI GDGCHC 1 cut(s) 459
SfaNI GCATC 3 cut(s) 283, 565, 655
SinI GGWCC 3 cut(s) 278, 521, 820
SmlI CTYRAG 3 cut(s) 161, 260, 313
SmoI CTYRAG 3 cut(s) 161, 260, 313
Sse9I AATT 3 cut(s) 855, 960, 985
SseBI AGGCCT 1 cut(s) 326
SsiI CCGC 6 cut(s) 179, 276, 349, 355, 740, 799
SspMI CTAG 3 cut(s) 123, 414, 506
StuI AGGCCT 1 cut(s) 326
StyD4I CCNGG 2 cut(s) 441, 517
StyI CCWWGG 4 cut(s) 459, 672, 802, 951
TaaI ACNGT 3 cut(s) 75, 706, 736
TaiI ACGT 1 cut(s) 818
TaqI TCGA 1 cut(s) 768
TaqII GACCGA 1 cut(s) 967
TasI AATT 3 cut(s) 855, 960, 985
TatI WGTACW 2 cut(s) 777, 831
TfiI GAWTC 1 cut(s) 419
Tru1I TTAA 4 cut(s) 11, 162, 876, 1048
Tru9I TTAA 4 cut(s) 11, 162, 876, 1048
TscAI CASTG 1 cut(s) 586
TseFI GTSAC 1 cut(s) 605
TseI GCWGC 4 cut(s) 126, 157, 194, 410
Tsp45I GTSAC 1 cut(s) 605
TspDTI ATGAA 3 cut(s) 21, 93, 809
TspGWI ACGGA 2 cut(s) 197, 740
TspRI CASTG 1 cut(s) 586
Tth111I GACNNNGTC 1 cut(s) 146
Vha464I CTTAAG 1 cut(s) 161
VpaK11BI GGWCC 3 cut(s) 278, 521, 820
XapI RAATTY 2 cut(s) 960, 985
XcmI CCANNNNNNNNNTGG 1 cut(s) 919
XmnI GAANNNNTTC 1 cut(s) 170
XspI CTAG 3 cut(s) 123, 414, 506
ZrmI AGTACT 1 cut(s) 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.