Rorug06G0081300

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
10816967 .. 10818643
1677 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0081300.1

Sequence Viewer

Length: 1677 bp
ATGATCAAAACATCAATTATGGGGCTATCACTGAGCTTGTGGACTAGTCTCATGCTTTCGAAACGAGTAATTCTCTTCATGTTTCATATCTTGGTTATTGCCAACTCTTTACACTCTCTGCAGCAGCCATCATCTTCCTGCCATGACGACGAGAGCTTCGCCTTGCTCCAGTTTAAGCAAAGCTTTGTCATCAATGAATCTGCTTCTGTTGGTGAGGGTGCTTATCCAAAGGTTTTGTCATGGAAACCAGCTGCTGCTAAAGGATGCTGCTCATGGGACGGGGTCGAGTGTGATGAGAAGACAGGTCATGTGATTGGACTTGATCTCAGTAGTAGCTGTCTCTCCGGCTCTATCAGCTCCAACAACACCCTCTTCCACCTTGTTTATCTTCAGAGCCTGAATCTTGCCGACAATGACTTCAATCAATCTAAAATTCCTACTACCATCAGGAATTTTCCAATGCTCCGTTATCTTAACCTCTCCGGCAGTTTCTTTTCTGGTCAAATCCCATCTGAAATTTCTCACTTGCCCAAATTGTTGTCCCTGGATCTATCCTCCAATAGTTACAGCAGTAACGGTGAAAGATCACTGAAGCTAAACCAGTCTGATCTAAGAAGGCTAGTTCAAAACTCAACTAGTCTAGAAAAGCTTCATCTCAGCTCCGTCATCATTTCTGCACCAGTACCCGATTCCTTGGCAAATTTATCATTTTTGACATCTCTCCTCCTAGAGTATTGTGAGCTGCTAGGCGAATTCCCAGTAAGTATTTTAAAATTACAGAGTTTAAAATTTCTTAATATAGAATCAAATCCAGATCTCACATGTTTTTTGCCGGCATTTGAACAAACAAGTCCTCTCATGTCATTGAGAGTTTCTAGAACAAGGTTTTCTGGAGACTTCCCTTCATCAATTGAAAAGCTTGATTCACTGAATGAGTTTGTTGCTAGTCGATGCAATTTTTCAGGTTTCCTTCCATCTTCACTAGGTAATCTTAGGCGGCTGGTTTATTTAGACCTTTCAAATAACACACTTACTGGCTCAATCCCTGCTTCTTTGGCAACCCTTACCCAACTGTCATATCTGTCACTTGATAATAATAATTTCAGTGGTTACATCCCGCCTTCTCTTGGAAATCTAACCCAGCTCACAACACTTTTGCTTGCATCAAATCAATTAACTGGTCCAATCCCATCTTCTCTAGGAAACCTCACCCAGCTCACTGAGTTAGACCTTTCTGGTAATGATTTCGATGGTCACATCCCGTCTTCCATCGGAGATCTCAACCAGCTCATAACACTTTCACTTCCCATGAATCAATTAACTGGGCCAATCCCATCTTCTCTAGGCAATCTTAGCAAACTAACTGCTCTAGATCTTTCTTCAAATAATTTGCACAGTTCCATTCCCGAGTCCTTATCCAATCTCACGAATCTCGAGTATCTTTATCTAGATAATAATAGTTTGAGCGGCAAAGTAAATTTCCAAATGTTTCAAAAGTTACAAAATCTCATCGTACTGTATTTATCTGGAAATAAATTGGAATTATTTTTCGAAGAGACAAGGTTTCTGAATGCAACAGCAACTTTTCCAAACCTAATGACTCTAGGATTGGGTTCTTGCAACATAACAGAGTTCCCAAGTTTCAGTTGGATTTGTAAAACACAAATAACAGAATAA

Protein Analysis

558

Amino Acids

61.15

Weight (kDa)

5.27

Isoelectric Point (pI)

44.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 48 - 98 3.8e-07 Leucine rich repeat N-terminal domain
LRR_8 PF13855 320 - 368 1.5e-06 Leucine rich repeat
LRR_14 PF23598 324 - 411 3e-10 Leucine-rich repeat region
LRR_4 PF12799 333 - 368 6.5e-06 Leucine Rich repeats (2 copies)
LRR_14 PF23598 376 - 547 1.7e-13 Leucine-rich repeat region
LRR_4 PF12799 380 - 418 2.8e-06 Leucine Rich repeats (2 copies)
LRR_8 PF13855 430 - 488 7.7e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71695
fragaria_vesca FvH4_2g13110
malus_domestica MD00G1190800.v1.1 MD10G1033300.v1.1
prunus_persica Prupe.8G038900_v2.0.a1
pyrus_communis pycom10g02150
rosa_chinensis RchiOBHm_Chr6g0274401
rosa_laevigata RLG00000013546
rosa_multiflora Rmu_sc0001289.1_g000007
rosa_roxburghii Rroxscaffold_7G00194260
rosa_rugosa Rorug06G0081300
rosa_samantha Rh6AG197400 Rh6BG201100 Rh6CG202000 Rh6DG192600
rosa_wichuraiana Rw6G017200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1467
AciI CCGC 3 cut(s) 997, 1118, 1467
AclWI GGATC 1 cut(s) 555
AcsI RAATTY 7 cut(s) 432, 451, 516, 700, 752, 788, 1477
AcuI CTGAAG 2 cut(s) 374, 611
AfaI GTAC 2 cut(s) 684, 1515
AfiI CCNNNNNNNGG 1 cut(s) 1127
AflIII ACRYGT 1 cut(s) 821
AgsI TTSAA 7 cut(s) 421, 626, 842, 914, 1020, 1383, 1493
AhlI ACTAGT 2 cut(s) 44, 635
AjnI CCWGG 1 cut(s) 543
AjuI GAANNNNNNNTTGG 4 cut(s) 1177, 1209, 1321, 1353
Alw26I GTCTC 4 cut(s) 53, 344, 888, 1550
AlwI GGATC 1 cut(s) 555
AlwNI CAGNNNCTG 2 cut(s) 254, 397
Ama87I CYCGRG 2 cut(s) 1406, 1433
AoxI GGCC 1 cut(s) 1325
ApeKI GCWGC 6 cut(s) 121, 124, 251, 254, 267, 742
ApoI RAATTY 7 cut(s) 432, 451, 516, 700, 752, 788, 1477
ArsI GACNNNNNNTTYG 4 cut(s) 140, 172, 221, 253
Asp700I GAANNNNTTC 1 cut(s) 648
AspS9I GGNCC 2 cut(s) 1181, 1325
AsuHPI GGTGA 3 cut(s) 224, 590, 1201
AsuII TTCGAA 2 cut(s) 59, 1551
AvaI CYCGRG 2 cut(s) 1406, 1433
AvaII GGWCC 1 cut(s) 1181
BbsI GAAGAC 2 cut(s) 305, 1257
BbvI GCAGC 6 cut(s) 133, 136, 238, 241, 254, 729
BccI CCATC 8 cut(s) 136, 452, 517, 982, 1198, 1244, 1277, 1342
BciT130I CCWGG 1 cut(s) 545
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 4 cut(s) 53, 344, 888, 1550
BcuI ACTAGT 2 cut(s) 44, 635
BfmI CTRYAG 1 cut(s) 119
BglII AGATCT 3 cut(s) 814, 1276, 1372
BisI GCNGC 8 cut(s) 122, 125, 252, 255, 268, 743, 998, 1468
BlsI GCNGC 8 cut(s) 123, 126, 253, 256, 269, 744, 999, 1469
Bme1390I CCNGG 1 cut(s) 545
Bme18I GGWCC 1 cut(s) 1181
BmeT110I CYCGRG 2 cut(s) 1406, 1433
BmgT120I GGNCC 2 cut(s) 1181, 1325
BmrFI CCNGG 1 cut(s) 545
BmrI ACTGGG 2 cut(s) 752, 1332
BmsI GCATC 3 cut(s) 254, 941, 1172
BmuI ACTGGG 2 cut(s) 752, 1332
BpiI GAAGAC 2 cut(s) 305, 1257
BplI GAGNNNNNCTC 2 cut(s) 57, 89
BpmI CTGGAG 2 cut(s) 152, 912
Bpu14I TTCGAA 2 cut(s) 59, 1551
BsaJI CCNNGG 2 cut(s) 543, 693
Bsc4I CCNNNNNNNGG 1 cut(s) 1127
Bse118I RCCGGY 1 cut(s) 832
Bse1I ACTGG 7 cut(s) 169, 601, 680, 758, 1039, 1183, 1327
BseBI CCWGG 1 cut(s) 545
BseDI CCNNGG 2 cut(s) 543, 693
BseGI GGATG 3 cut(s) 269, 1113, 1257
BseLI CCNNNNNNNGG 1 cut(s) 1127
BseMII CTCAG 4 cut(s) 23, 340, 670, 1212
BseNI ACTGG 7 cut(s) 169, 601, 680, 758, 1039, 1183, 1327
BseRI GAGGAG 1 cut(s) 713
BseXI GCAGC 6 cut(s) 133, 136, 238, 241, 254, 729
BseYI CCCAGC 2 cut(s) 1140, 1212
BsgI GTGCAG 1 cut(s) 660
BshFI GGCC 1 cut(s) 1327
BsiHKCI CYCGRG 2 cut(s) 1406, 1433
BsiSI CCGG 3 cut(s) 345, 483, 833
BslFI GGGAC 2 cut(s) 290, 526
BslI CCNNNNNNNGG 1 cut(s) 1127
BsmAI GTCTC 4 cut(s) 53, 344, 888, 1550
BsmFI GGGAC 2 cut(s) 290, 526
BsmI GAATGC 1 cut(s) 1576
BsnI GGCC 1 cut(s) 1327
BsoBI CYCGRG 2 cut(s) 1406, 1433
Bsp119I TTCGAA 2 cut(s) 59, 1551
Bsp143I GATC 8 cut(s) 3, 322, 547, 584, 607, 814, 1276, 1372
BspACI CCGC 3 cut(s) 997, 1118, 1467
BspANI GGCC 1 cut(s) 1327
BspCNI CTCAG 4 cut(s) 24, 339, 669, 1213
BspMAI CTGCAG 1 cut(s) 123
BspPI GGATC 1 cut(s) 555
BspT104I TTCGAA 2 cut(s) 59, 1551
BsrBI CCGCTC 1 cut(s) 1467
BsrFI RCCGGY 1 cut(s) 832
BsrI ACTGG 7 cut(s) 169, 601, 680, 758, 1039, 1183, 1327
BssAI RCCGGY 1 cut(s) 832
BssECI CCNNGG 2 cut(s) 543, 693
BssMI GATC 8 cut(s) 3, 322, 547, 584, 607, 814, 1276, 1372
BssT1I CCWWGG 1 cut(s) 693
Bst2UI CCWGG 1 cut(s) 545
Bst4CI ACNGT 4 cut(s) 578, 1074, 1397, 1518
Bst6I CTCTTC 3 cut(s) 80, 377, 1548
BstBI TTCGAA 2 cut(s) 59, 1551
BstC8I GCNNGC 2 cut(s) 834, 1161
BstDEI CTNAG 7 cut(s) 32, 326, 611, 656, 992, 1221, 1352
BstF5I GGATG 3 cut(s) 269, 1113, 1257
BstKTI GATC 8 cut(s) 6, 325, 550, 587, 610, 817, 1279, 1375
BstMAI GTCTC 4 cut(s) 53, 344, 888, 1550
BstMBI GATC 8 cut(s) 3, 322, 547, 584, 607, 814, 1276, 1372
BstMWI GCNNNNNNNGC 3 cut(s) 354, 1055, 1353
BstNI CCWGG 1 cut(s) 545
BstNSI RCATGY 1 cut(s) 825
BstSCI CCNGG 1 cut(s) 543
BstSFI CTRYAG 1 cut(s) 119
BstV1I GCAGC 6 cut(s) 133, 136, 238, 241, 254, 729
BstV2I GAAGAC 2 cut(s) 305, 1257
BstX2I RGATCY 4 cut(s) 547, 814, 1276, 1372
BstYI RGATCY 4 cut(s) 547, 814, 1276, 1372
BsuRI GGCC 1 cut(s) 1327
BtsCI GGATG 3 cut(s) 269, 1113, 1257
BtsIMutI CAGTG 5 cut(s) 29, 587, 926, 1111, 1218
Cac8I GCNNGC 2 cut(s) 834, 1161
CaiI CAGNNNCTG 2 cut(s) 254, 397
Cfr10I RCCGGY 1 cut(s) 832
Cfr13I GGNCC 2 cut(s) 1181, 1325
Csp6I GTAC 2 cut(s) 683, 1514
CviAII CATG 9 cut(s) 52, 79, 143, 240, 273, 308, 822, 859, 1309
CviQI GTAC 2 cut(s) 683, 1514
DdeI CTNAG 7 cut(s) 32, 326, 611, 656, 992, 1221, 1352
DpnI GATC 8 cut(s) 5, 324, 549, 586, 609, 816, 1278, 1374
DpnII GATC 8 cut(s) 3, 322, 547, 584, 607, 814, 1276, 1372
DraI TTTAAA 2 cut(s) 771, 786
Eam1104I CTCTTC 3 cut(s) 80, 377, 1548
EarI CTCTTC 3 cut(s) 80, 377, 1548
Eco130I CCWWGG 1 cut(s) 693
Eco47I GGWCC 1 cut(s) 1181
Eco57I CTGAAG 2 cut(s) 374, 611
Eco88I CYCGRG 2 cut(s) 1406, 1433
EcoRI GAATTC 1 cut(s) 752
EcoRII CCWGG 1 cut(s) 543
EcoT14I CCWWGG 1 cut(s) 693
ErhI CCWWGG 1 cut(s) 693
FaeI CATG 9 cut(s) 55, 82, 146, 243, 276, 311, 825, 862, 1312
FalI AAGNNNNNCTT 2 cut(s) 167, 199
FaqI GGGAC 2 cut(s) 290, 526
FatI CATG 9 cut(s) 51, 78, 142, 239, 272, 307, 821, 858, 1308
FauI CCCGC 1 cut(s) 1125
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 8 cut(s) 122, 125, 252, 255, 268, 743, 998, 1468
FokI GGATG 3 cut(s) 276, 1100, 1244
Fsp4HI GCNGC 8 cut(s) 122, 125, 252, 255, 268, 743, 998, 1468
GluI GCNGC 8 cut(s) 122, 125, 252, 255, 268, 743, 998, 1468
GsaI CCCAGC 2 cut(s) 1144, 1216
GsuI CTGGAG 2 cut(s) 152, 912
HaeIII GGCC 1 cut(s) 1327
HapII CCGG 3 cut(s) 345, 483, 833
Hin1II CATG 9 cut(s) 55, 82, 146, 243, 276, 311, 825, 862, 1312
HindIII AAGCTT 3 cut(s) 181, 647, 917
HinfI GANTC 9 cut(s) 197, 400, 689, 803, 923, 1312, 1409, 1429, 1600
HpaII CCGG 3 cut(s) 345, 483, 833
HphI GGTGA 3 cut(s) 224, 590, 1201
Hpy166II GTNNAC 1 cut(s) 42
Hpy188I TCNGA 5 cut(s) 393, 514, 607, 1274, 1569
Hpy8I GTNNAC 1 cut(s) 42
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 4 cut(s) 609, 912, 980, 1131
HpyCH4III ACNGT 4 cut(s) 578, 1074, 1397, 1518
HpyCH4V TGCA 7 cut(s) 121, 677, 954, 1163, 1393, 1574, 1620
HpyF10VI GCNNNNNNNGC 3 cut(s) 354, 1055, 1353
HpyF3I CTNAG 7 cut(s) 32, 326, 611, 656, 992, 1221, 1352
Hsp92II CATG 9 cut(s) 55, 82, 146, 243, 276, 311, 825, 862, 1312
KroI GCCGGC 1 cut(s) 832
KroNI GCCGGC 1 cut(s) 834
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 8 cut(s) 3, 322, 547, 584, 607, 814, 1276, 1372
LmnI GCTCC 4 cut(s) 171, 362, 468, 665
Lsp1109I GCAGC 6 cut(s) 133, 136, 238, 241, 254, 729
LweI GCATC 3 cut(s) 254, 941, 1172
MaeIII GTNAC 6 cut(s) 563, 572, 1083, 1109, 1253, 1497
MalI GATC 8 cut(s) 5, 324, 549, 586, 609, 816, 1278, 1374
MbiI CCGCTC 1 cut(s) 1467
MboI GATC 8 cut(s) 3, 322, 547, 584, 607, 814, 1276, 1372
MfeI CAATTG 1 cut(s) 909
MflI RGATCY 4 cut(s) 547, 814, 1276, 1372
MlyI GAGTC 2 cut(s) 1418, 1594
MmeI TCCRAC 2 cut(s) 384, 1628
MnlI CCTC 7 cut(s) 208, 380, 488, 565, 734, 864, 1217
MroNI GCCGGC 1 cut(s) 832
MroXI GAANNNNTTC 1 cut(s) 648
MseI TTAA 7 cut(s) 174, 474, 770, 785, 795, 1175, 1319
MspA1I CMGCKG 1 cut(s) 251
MspI CCGG 3 cut(s) 345, 483, 833
MspR9I CCNGG 1 cut(s) 545
MunI CAATTG 1 cut(s) 909
Mva1269I GAATGC 1 cut(s) 1576
MvaI CCWGG 1 cut(s) 545
MwoI GCNNNNNNNGC 3 cut(s) 354, 1055, 1353
NaeI GCCGGC 1 cut(s) 834
NdeII GATC 8 cut(s) 3, 322, 547, 584, 607, 814, 1276, 1372
NgoMIV GCCGGC 1 cut(s) 832
NlaIII CATG 9 cut(s) 55, 82, 146, 243, 276, 311, 825, 862, 1312
NmuCI GTSAC 2 cut(s) 1083, 1253
NspI RCATGY 1 cut(s) 825
NspV TTCGAA 2 cut(s) 59, 1551
PaeR7I CTCGAG 1 cut(s) 1433
PciI ACATGT 1 cut(s) 821
PctI GAATGC 1 cut(s) 1576
PdiI GCCGGC 1 cut(s) 834
PdmI GAANNNNTTC 1 cut(s) 648
PfeI GAWTC 7 cut(s) 197, 400, 689, 803, 923, 1312, 1429
PflFI GACNNNGTC 1 cut(s) 281
PkrI GCNGC 8 cut(s) 123, 126, 253, 256, 269, 744, 999, 1469
PleI GAGTC 2 cut(s) 1417, 1594
PpsI GAGTC 2 cut(s) 1417, 1594
PscI ACATGT 1 cut(s) 821
Psp6I CCWGG 1 cut(s) 543
PspFI CCCAGC 2 cut(s) 1140, 1212
PspGI CCWGG 1 cut(s) 543
PspPI GGNCC 2 cut(s) 1181, 1325
PstI CTGCAG 1 cut(s) 123
PstNI CAGNNNCTG 2 cut(s) 254, 397
PsuI RGATCY 4 cut(s) 547, 814, 1276, 1372
PsyI GACNNNGTC 1 cut(s) 281
PvuII CAGCTG 1 cut(s) 251
RsaI GTAC 2 cut(s) 684, 1515
RsaNI GTAC 2 cut(s) 683, 1514
SaqAI TTAA 7 cut(s) 174, 474, 770, 785, 795, 1175, 1319
SatI GCNGC 8 cut(s) 122, 125, 252, 255, 268, 743, 998, 1468
Sau3AI GATC 8 cut(s) 3, 322, 547, 584, 607, 814, 1276, 1372
Sau96I GGNCC 2 cut(s) 1181, 1325
SchI GAGTC 2 cut(s) 1418, 1594
ScrFI CCNGG 1 cut(s) 545
SfaNI GCATC 3 cut(s) 254, 941, 1172
SfcI CTRYAG 1 cut(s) 119
Sfr274I CTCGAG 1 cut(s) 1433
SfuI TTCGAA 2 cut(s) 59, 1551
SinI GGWCC 1 cut(s) 1181
SlaI CTCGAG 1 cut(s) 1433
SmlI CTYRAG 1 cut(s) 1433
SmoI CTYRAG 1 cut(s) 1433
SpeI ACTAGT 2 cut(s) 44, 635
SsiI CCGC 3 cut(s) 997, 1118, 1467
StyD4I CCNGG 1 cut(s) 543
StyI CCWWGG 1 cut(s) 693
TaaI ACNGT 4 cut(s) 578, 1074, 1397, 1518
TaqI TCGA 6 cut(s) 59, 285, 949, 1248, 1434, 1551
TauI GCSGC 2 cut(s) 1000, 1470
TfiI GAWTC 7 cut(s) 197, 400, 689, 803, 923, 1312, 1429
Tru1I TTAA 7 cut(s) 174, 474, 770, 785, 795, 1175, 1319
Tru9I TTAA 7 cut(s) 174, 474, 770, 785, 795, 1175, 1319
TscAI CASTG 5 cut(s) 36, 594, 933, 1111, 1225
TseFI GTSAC 2 cut(s) 1083, 1253
TseI GCWGC 6 cut(s) 121, 124, 251, 254, 267, 742
Tsp45I GTSAC 2 cut(s) 1083, 1253
TspDTI ATGAA 6 cut(s) 67, 74, 210, 641, 894, 1325
TspGWI ACGGA 2 cut(s) 455, 652
TspRI CASTG 5 cut(s) 36, 594, 933, 1111, 1225
Tth111I GACNNNGTC 1 cut(s) 281
VpaK11BI GGWCC 1 cut(s) 1181
XapI RAATTY 7 cut(s) 432, 451, 516, 700, 752, 788, 1477
XbaI TCTAGA 4 cut(s) 640, 875, 1369, 1447
XceI RCATGY 1 cut(s) 825
XcmI CCANNNNNNNNNTGG 1 cut(s) 1644
XhoI CTCGAG 1 cut(s) 1433
XmnI GAANNNNTTC 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.