Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0015039

Physical Location & Seq

Genomic Coordinates Forward (+)

36014371 .. 36017163

Gene Structure 2793 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00194260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCTAGTTTTGCTTCTCTTTGCTCTCTGCTTCTGGTCGTGTCTTCTGTTTTAATTTCTTCCTATTTTGGTGTCTCGGAGGCACAACCCTCAGTTCCTCTAGTTAAAGGGCTCTCTTGGTCCTTCTATGATTCTAGCTGTCCTAAGCTCGAATCCATTGTAAGAAAGCAGCTCAAGAAGGTCTTCAAGGAAGACATTGGCCAGGCTGCTGGCTTGCTTCGTCTCCATTTCCATGACTGCTTTGTTCAGGGATGTGATGGGTCAGTTTTGCTTGATGGATCAGCGAGTGGTCCAAGTGAGCAGGAGGCACCTCCAAACCTGAGTTTGAGAGCGAAGGCCTTCGAAATCATCAATGACCTCCGTGAGCTAGTTCATAGCAAATGTGGGAGGGTTGTTTCTTGTGCTGATATAACTGCTCTTGCTGCTAGGGATTCTGTTTTCCTGGTGGCCCTGACTATGAAAACTTGCCAAGAAAAGTTGGATGCCACTGATGTGGTAGCCCTCTCAGGTGGCCACACCATTGGACTTGGCCATTGTACATCCTTCACTGAACGGCTCTATCCAACCCAAGACCCTAGCATGGACAAAACTTTTGCCAATGACCTTAAGGAAGTTTGTCCTGCATCGGACACGAATGCCACAACTGTGCTTGATATCCGCTCGCCTGATACGTTTGACAACAAGTACTACGTTGATCTCATGAACCGCCAAGGTCTATTCACATCGGACCAAGATTTATACACAGATAAAAGGACGCGCGACATTGTCACCAGCTTTGCTGTCAATCAGACATTGTTCTTCGAGCAATTTGTTCATTCCATGATCAAGATGGGGCAATTGAGCGTACTAACTGGTTCCAAAGGTGAAATTCGCGCTAATTGCTCAGTGAGGAACTCAGACAACGCAGATTACTTGAGCTCCGTGGTGGAAGAGGATGAGGAGAGTTTGTCTGAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016020 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

319

Amino Acids

34.94

Weight (kDa)

4.91

Isoelectric Point (pI)

39.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	54 - 150	2e-31	Peroxidase
peroxidase	PF00141	157 - 261	5.8e-33	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71695
fragaria_vesca	FvH4_2g13110
malus_domestica	MD00G1190800.v1.1 MD10G1033300.v1.1
prunus_persica	Prupe.8G038900_v2.0.a1
pyrus_communis	pycom10g02150
rosa_chinensis	RchiOBHm_Chr6g0274401
rosa_laevigata	RLG00000013546
rosa_multiflora	Rmu_sc0001289.1_g000007
rosa_roxburghii	Rroxscaffold_7G00194260
rosa_rugosa	Rorug06G0081300
rosa_samantha	Rh6AG197400 Rh6BG201100 Rh6CG202000 Rh6DG192600
rosa_wichuraiana	Rw6G017200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	307
AccBSI	CCGCTC	1 cut(s)	660
AccII	CGCG	3 cut(s)	757, 759, 873
AciI	CCGC	2 cut(s)	658, 706
AclWI	GGATC	1 cut(s)	286
AcoI	YGGCCR	3 cut(s)	199, 511, 529
AcsI	RAATTY	1 cut(s)	867
AfaI	GTAC	3 cut(s)	538, 686, 846
AfiI	CCNNNNNNNGG	1 cut(s)	580
AflII	CTTAAG	1 cut(s)	605
AgsI	TTSAA	1 cut(s)	187
AjnI	CCWGG	2 cut(s)	201, 441
AleI	CACNNNNGTG	2 cut(s)	491, 644
AluBI	AGCT	6 cut(s)	138, 148, 172, 367, 774, 918
AluI	AGCT	6 cut(s)	138, 148, 172, 367, 774, 918
Alw21I	GWGCWC	1 cut(s)	920
Alw26I	GTCTC	2 cut(s)	79, 227
AlwI	GGATC	1 cut(s)	286
AoxI	GGCC	5 cut(s)	199, 336, 447, 511, 529
ApeKI	GCWGC	3 cut(s)	169, 206, 422
ApoI	RAATTY	1 cut(s)	867
ArsI	GACNNNNNNTTYG	2 cut(s)	575, 607
Asp700I	GAANNNNTTC	2 cut(s)	182, 338
AspLEI	GCGC	2 cut(s)	759, 875
AspS9I	GGNCC	4 cut(s)	120, 290, 448, 727
AsuHPI	GGTGA	2 cut(s)	760, 875
AsuII	TTCGAA	1 cut(s)	342
AvaII	GGWCC	3 cut(s)	120, 290, 727
BalI	TGGCCA	3 cut(s)	201, 513, 531
BanI	GGYRCC	1 cut(s)	307
BanII	GRGCYC	2 cut(s)	114, 920
BbsI	GAAGAC	3 cut(s)	36, 175, 198
Bbv12I	GWGCWC	1 cut(s)	920
BbvI	GCAGC	3 cut(s)	181, 193, 409
BccI	CCATC	3 cut(s)	251, 269, 823
BceAI	ACGGC	1 cut(s)	569
BciT130I	CCWGG	2 cut(s)	203, 443
BclI	TGATCA	1 cut(s)	822
BcoDI	GTCTC	2 cut(s)	79, 227
BfaI	CTAG	6 cut(s)	6, 101, 135, 368, 426, 576
BfrI	CTTAAG	1 cut(s)	605
BisI	GCNGC	3 cut(s)	170, 207, 423
BlsI	GCNGC	3 cut(s)	171, 208, 424
BmcAI	AGTACT	1 cut(s)	686
Bme1390I	CCNGG	2 cut(s)	203, 443
Bme18I	GGWCC	3 cut(s)	120, 290, 727
BmgT120I	GGNCC	4 cut(s)	120, 290, 448, 727
BmiI	GGNNCC	2 cut(s)	309, 856
BmrFI	CCNGG	2 cut(s)	203, 443
BmsI	GCATC	2 cut(s)	472, 632
BpiI	GAAGAC	3 cut(s)	36, 175, 198
Bpu10I	CCTNAGC	1 cut(s)	144
Bpu14I	TTCGAA	1 cut(s)	342
BpuEI	CTTGAG	2 cut(s)	158, 934
BsaJI	CCNNGG	2 cut(s)	709, 921
BsaXI	ACNNNNNCTCC	3 cut(s)	902, 932, 932
Bsc4I	CCNNNNNNNGG	1 cut(s)	580
Bse1I	ACTGG	1 cut(s)	856
BseBI	CCWGG	2 cut(s)	203, 443
BseDI	CCNNGG	2 cut(s)	709, 921
BseGI	GGATG	4 cut(s)	257, 487, 539, 940
BseLI	CCNNNNNNNGG	1 cut(s)	580
BseMII	CTCAG	6 cut(s)	105, 311, 519, 897, 909, 942
BseNI	ACTGG	1 cut(s)	856
BseRI	GAGGAG	1 cut(s)	953
BseXI	GCAGC	3 cut(s)	181, 193, 409
Bsh1236I	CGCG	3 cut(s)	757, 759, 873
BshFI	GGCC	5 cut(s)	201, 338, 449, 513, 531
BshNI	GGYRCC	1 cut(s)	307
BsiHKAI	GWGCWC	1 cut(s)	920
BslI	CCNNNNNNNGG	1 cut(s)	580
BsmAI	GTCTC	2 cut(s)	79, 227
BsmBI	CGTCTC	1 cut(s)	227
BsmI	GAATGC	1 cut(s)	640
BsnI	GGCC	5 cut(s)	201, 338, 449, 513, 531
Bsp119I	TTCGAA	1 cut(s)	342
Bsp1286I	GDGCHC	2 cut(s)	114, 920
Bsp1407I	TGTACA	1 cut(s)	536
Bsp143I	GATC	3 cut(s)	278, 694, 822
BspACI	CCGC	2 cut(s)	658, 706
BspANI	GGCC	5 cut(s)	201, 338, 449, 513, 531
BspCNI	CTCAG	6 cut(s)	104, 312, 518, 896, 908, 943
BspFNI	CGCG	3 cut(s)	757, 759, 873
BspHI	TCATGA	1 cut(s)	699
BspLI	GGNNCC	2 cut(s)	309, 856
BspPI	GGATC	1 cut(s)	286
BspT104I	TTCGAA	1 cut(s)	342
BspT107I	GGYRCC	1 cut(s)	307
BspTI	CTTAAG	1 cut(s)	605
BsrBI	CCGCTC	1 cut(s)	660
BsrGI	TGTACA	1 cut(s)	536
BsrI	ACTGG	1 cut(s)	856
BssECI	CCNNGG	2 cut(s)	709, 921
BssMI	GATC	3 cut(s)	278, 694, 822
BssT1I	CCWWGG	1 cut(s)	709
Bst2UI	CCWGG	2 cut(s)	203, 443
Bst4CI	ACNGT	1 cut(s)	646
Bst6I	CTCTTC	1 cut(s)	924
BstAFI	CTTAAG	1 cut(s)	605
BstAUI	TGTACA	1 cut(s)	536
BstBI	TTCGAA	1 cut(s)	342
BstC8I	GCNNGC	3 cut(s)	211, 215, 662
BstDEI	CTNAG	7 cut(s)	91, 144, 320, 505, 883, 895, 951
BstDSI	CCRYGG	1 cut(s)	921
BstF5I	GGATG	4 cut(s)	257, 487, 539, 940
BstFNI	CGCG	3 cut(s)	757, 759, 873
BstHHI	GCGC	2 cut(s)	759, 875
BstKTI	GATC	3 cut(s)	281, 697, 825
BstMAI	GTCTC	2 cut(s)	79, 227
BstMBI	GATC	3 cut(s)	278, 694, 822
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 422, 879
BstNI	CCWGG	2 cut(s)	203, 443
BstSCI	CCNGG	2 cut(s)	201, 441
BstUI	CGCG	3 cut(s)	757, 759, 873
BstV1I	GCAGC	3 cut(s)	181, 193, 409
BstV2I	GAAGAC	3 cut(s)	36, 175, 198
BstXI	CCANNNNNNTGG	3 cut(s)	209, 493, 521
BsuRI	GGCC	5 cut(s)	201, 338, 449, 513, 531
BtgI	CCRYGG	1 cut(s)	921
BtsCI	GGATG	4 cut(s)	257, 487, 539, 940
BtsIMutI	CAGTG	3 cut(s)	486, 546, 891
Cac8I	GCNNGC	3 cut(s)	211, 215, 662
CciI	TCATGA	1 cut(s)	699
CfoI	GCGC	2 cut(s)	759, 875
Cfr13I	GGNCC	4 cut(s)	120, 290, 448, 727
CseI	GACGC	1 cut(s)	763
Csp6I	GTAC	3 cut(s)	537, 685, 845
CviAII	CATG	4 cut(s)	233, 580, 700, 820
CviQI	GTAC	3 cut(s)	537, 685, 845
DdeI	CTNAG	7 cut(s)	91, 144, 320, 505, 883, 895, 951
DpnI	GATC	3 cut(s)	280, 696, 824
DpnII	GATC	3 cut(s)	278, 694, 822
EaeI	YGGCCR	3 cut(s)	199, 511, 529
Eam1104I	CTCTTC	1 cut(s)	924
EarI	CTCTTC	1 cut(s)	924
Ecl136II	GAGCTC	1 cut(s)	918
Eco130I	CCWWGG	1 cut(s)	709
Eco147I	AGGCCT	1 cut(s)	338
Eco24I	GRGCYC	2 cut(s)	114, 920
Eco32I	GATATC	1 cut(s)	655
Eco47I	GGWCC	3 cut(s)	120, 290, 727
Eco53kI	GAGCTC	1 cut(s)	918
EcoICRI	GAGCTC	1 cut(s)	918
EcoRII	CCWGG	2 cut(s)	201, 441
EcoRV	GATATC	1 cut(s)	655
EcoT14I	CCWWGG	1 cut(s)	709
EcoT38I	GRGCYC	2 cut(s)	114, 920
ErhI	CCWWGG	1 cut(s)	709
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	4 cut(s)	236, 583, 703, 823
FaiI	YATR	9 cut(s)	129, 234, 375, 410, 458, 581, 701, 739, 821
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FatI	CATG	4 cut(s)	232, 579, 699, 819
FbaI	TGATCA	1 cut(s)	822
Fnu4HI	GCNGC	3 cut(s)	170, 207, 423
FokI	GGATG	4 cut(s)	264, 494, 526, 947
FriOI	GRGCYC	2 cut(s)	114, 920
Fsp4HI	GCNGC	3 cut(s)	170, 207, 423
FspBI	CTAG	6 cut(s)	6, 101, 135, 368, 426, 576
GlaI	GCGC	2 cut(s)	758, 874
GluI	GCNGC	3 cut(s)	170, 207, 423
HaeIII	GGCC	5 cut(s)	201, 338, 449, 513, 531
HgaI	GACGC	1 cut(s)	763
HhaI	GCGC	2 cut(s)	759, 875
Hin1II	CATG	4 cut(s)	236, 583, 703, 823
Hin6I	GCGC	2 cut(s)	757, 873
HinP1I	GCGC	2 cut(s)	757, 873
HinfI	GANTC	3 cut(s)	131, 152, 431
HphI	GGTGA	2 cut(s)	760, 875
Hpy188I	TCNGA	6 cut(s)	79, 628, 727, 789, 898, 952
Hpy188III	TCNNGA	3 cut(s)	175, 700, 826
HpyAV	CCTTC	5 cut(s)	133, 172, 328, 349, 553
HpyCH4III	ACNGT	1 cut(s)	646
HpyCH4IV	ACGT	2 cut(s)	671, 690
HpyCH4V	TGCA	1 cut(s)	623
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 422, 879
HpyF3I	CTNAG	7 cut(s)	91, 144, 320, 505, 883, 895, 951
HpySE526I	ACGT	2 cut(s)	671, 690
Hsp92II	CATG	4 cut(s)	236, 583, 703, 823
HspAI	GCGC	2 cut(s)	757, 873
Ksp22I	TGATCA	1 cut(s)	822
Kzo9I	GATC	3 cut(s)	278, 694, 822
LmnI	GCTCC	1 cut(s)	923
Lsp1109I	GCAGC	3 cut(s)	181, 193, 409
LweI	GCATC	2 cut(s)	472, 632
MaeI	CTAG	6 cut(s)	6, 101, 135, 368, 426, 576
MaeII	ACGT	2 cut(s)	671, 690
MaeIII	GTNAC	1 cut(s)	766
MalI	GATC	3 cut(s)	280, 696, 824
MbiI	CCGCTC	1 cut(s)	660
MboI	GATC	3 cut(s)	278, 694, 822
MboII	GAAGA	6 cut(s)	36, 51, 175, 203, 790, 941
MfeI	CAATTG	1 cut(s)	836
MhlI	GDGCHC	2 cut(s)	114, 920
MlsI	TGGCCA	3 cut(s)	201, 513, 531
MluCI	AATT	5 cut(s)	54, 806, 836, 867, 877
MluNI	TGGCCA	3 cut(s)	201, 513, 531
MmeI	TCCRAC	2 cut(s)	459, 587
Mox20I	TGGCCA	3 cut(s)	201, 513, 531
MroXI	GAANNNNTTC	2 cut(s)	182, 338
MscI	TGGCCA	3 cut(s)	201, 513, 531
MseI	TTAA	4 cut(s)	53, 105, 606, 958
MslI	CAYNNNNRTG	3 cut(s)	231, 491, 644
Msp20I	TGGCCA	3 cut(s)	201, 513, 531
MspCI	CTTAAG	1 cut(s)	605
MspR9I	CCNGG	2 cut(s)	203, 443
MunI	CAATTG	1 cut(s)	836
Mva1269I	GAATGC	1 cut(s)	640
MvaI	CCWGG	2 cut(s)	203, 443
MvnI	CGCG	3 cut(s)	757, 759, 873
MwoI	GCNNNNNNNGC	3 cut(s)	11, 422, 879
NdeII	GATC	3 cut(s)	278, 694, 822
NlaIII	CATG	4 cut(s)	236, 583, 703, 823
NlaIV	GGNNCC	2 cut(s)	309, 856
NmuCI	GTSAC	1 cut(s)	766
NspV	TTCGAA	1 cut(s)	342
OliI	CACNNNNGTG	2 cut(s)	491, 644
PagI	TCATGA	1 cut(s)	699
PceI	AGGCCT	1 cut(s)	338
PcsI	WCGNNNNNNNCGW	1 cut(s)	668
PctI	GAATGC	1 cut(s)	640
PdmI	GAANNNNTTC	2 cut(s)	182, 338
PfeI	GAWTC	3 cut(s)	131, 152, 431
PflFI	GACNNNGTC	1 cut(s)	764
PkrI	GCNGC	3 cut(s)	171, 208, 424
Psp124BI	GAGCTC	1 cut(s)	920
Psp6I	CCWGG	2 cut(s)	201, 441
PspGI	CCWGG	2 cut(s)	201, 441
PspN4I	GGNNCC	2 cut(s)	309, 856
PspPI	GGNCC	4 cut(s)	120, 290, 448, 727
PsyI	GACNNNGTC	1 cut(s)	764
RsaI	GTAC	3 cut(s)	538, 686, 846
RsaNI	GTAC	3 cut(s)	537, 685, 845
RseI	CAYNNNNRTG	3 cut(s)	231, 491, 644
SacI	GAGCTC	1 cut(s)	920
SaqAI	TTAA	4 cut(s)	53, 105, 606, 958
SatI	GCNGC	3 cut(s)	170, 207, 423
Sau3AI	GATC	3 cut(s)	278, 694, 822
Sau96I	GGNCC	4 cut(s)	120, 290, 448, 727
ScaI	AGTACT	1 cut(s)	686
ScrFI	CCNGG	2 cut(s)	203, 443
SduI	GDGCHC	2 cut(s)	114, 920
SfaNI	GCATC	2 cut(s)	472, 632
SfuI	TTCGAA	1 cut(s)	342
SinI	GGWCC	3 cut(s)	120, 290, 727
SmiMI	CAYNNNNRTG	3 cut(s)	231, 491, 644
SmlI	CTYRAG	3 cut(s)	173, 605, 913
SmoI	CTYRAG	3 cut(s)	173, 605, 913
Sse9I	AATT	5 cut(s)	54, 806, 836, 867, 877
SseBI	AGGCCT	1 cut(s)	338
SsiI	CCGC	2 cut(s)	658, 706
SspMI	CTAG	6 cut(s)	6, 101, 135, 368, 426, 576
SstI	GAGCTC	1 cut(s)	920
StuI	AGGCCT	1 cut(s)	338
StyD4I	CCNGG	2 cut(s)	201, 441
StyI	CCWWGG	1 cut(s)	709
TaaI	ACNGT	1 cut(s)	646
TaiI	ACGT	2 cut(s)	674, 693
TaqI	TCGA	3 cut(s)	150, 342, 801
TasI	AATT	5 cut(s)	54, 806, 836, 867, 877
TatI	WGTACW	2 cut(s)	536, 684
TfiI	GAWTC	3 cut(s)	131, 152, 431
Tru1I	TTAA	4 cut(s)	53, 105, 606, 958
Tru9I	TTAA	4 cut(s)	53, 105, 606, 958
TscAI	CASTG	3 cut(s)	493, 553, 891
TseFI	GTSAC	1 cut(s)	766
TseI	GCWGC	3 cut(s)	169, 206, 422
Tsp45I	GTSAC	1 cut(s)	766
TspDTI	ATGAA	4 cut(s)	362, 473, 716, 803
TspGWI	ACGGA	2 cut(s)	350, 910
TspRI	CASTG	3 cut(s)	493, 553, 891
Tth111I	GACNNNGTC	1 cut(s)	764
Vha464I	CTTAAG	1 cut(s)	605
VpaK11BI	GGWCC	3 cut(s)	120, 290, 727
XapI	RAATTY	1 cut(s)	867
XcmI	CCANNNNNNNNNTGG	1 cut(s)	826
XmnI	GAANNNNTTC	2 cut(s)	182, 338
XspI	CTAG	6 cut(s)	6, 101, 135, 368, 426, 576
ZrmI	AGTACT	1 cut(s)	686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.