Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0015039

Physical Location & Seq

Genomic Coordinates Forward (+)

3885318 .. 3888742

Gene Structure 3425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G038900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGCTGCTTCTTCTTCTGCTTCATTCACCTTTTTCTCTCTGCTTCTGGTTTCTTCTCTCTTTGTTTCTTCTTTGTTTTGTGTCTCAGAGGCACAACCTTCTGTCCCTGTGGTTAAAGGGCTTTCGTGGTCCTTCTACGAGTCTAGCTGCCCTAATCTCAACTCCATAATCAGAAAACACCTCAAGAAAGTCTTCAAGGAGGACATTGGCCAAGCTGCTGGCTTGCTTCGTCTCCATTTCCATGACTGCTTTGTTCAGGGATGTGATGGGTCGGTTTTGCTGGAGGGATCAGCCAGTGGACCAAGTGAGCAGGAGGCGCCTCCCAACCTGACCTTGAGGGCAAAGGCTTTTCAAATCATCAATGACCTCCGTGAGCTTATTCACAAGAAGTGTGGCAGAGTTGTCTCTTGTTCTGATATCACAGCCTTGGCTGCAAGAGATTCTGTTTTCCTGTCGGGTGGCCCTGACTATGATGTGCCATTGGGAAGAAAGGATGGGCTAAACTTTGCAACACAAAATGCAACCCAAGCAAACCTTCCCCCTCCCTCAAGCAACACAAGCAAACTTCTCACAGACCTGGCAAAGAAGAACCTAGATGCCACAGATGTTGTAGCCCTCTCTGGTGGCCACACCATTGGCCTTGGCCATTGCTCCTCCTTCACTGACAGGCTCTACCCAACCCAAGACCCTACCATGGACAAAACTTTTGCCAATGACCTCAAGGAAATTTGCCCTGCAGAAGACACCAACGCCACCACCGTGCTCGATATCCGTTCACCGGACACATTCGACAACAAATACTACGTCGATCTCATGAACCGCCAAGGTTTATTCACATCGGACCAAGATTTGTACACGGATAAAAGGACAAAGGACATTGTCAAGAGCTTTGCTGTTAACCAGACCTTGTTCTTTGAGGAGTTTGTGAAATCTATGATCAAGATGGGGCAATTAAGCGTGCTGACTGGCTCCAGAGGCGAAATTCGTGCAGATTGCTCGGTGAGGAATTCGGACAATAAGAGTTACTTGTCCTCTGTGGTTGAAGAGGATGAGGAGAGCTTGTCTGAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016020 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

358

Amino Acids

39.04

Weight (kDa)

5.16

Isoelectric Point (pI)

41.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71695
fragaria_vesca	FvH4_2g13110
malus_domestica	MD00G1190800.v1.1 MD10G1033300.v1.1
prunus_persica	Prupe.8G038900_v2.0.a1
pyrus_communis	pycom10g02150
rosa_chinensis	RchiOBHm_Chr6g0274401
rosa_laevigata	RLG00000013546
rosa_multiflora	Rmu_sc0001289.1_g000007
rosa_roxburghii	Rroxscaffold_7G00194260
rosa_rugosa	Rorug06G0081300
rosa_samantha	Rh6AG197400 Rh6BG201100 Rh6CG202000 Rh6DG192600
rosa_wichuraiana	Rw6G017200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	316
AciI	CCGC	1 cut(s)	820
AclWI	GGATC	1 cut(s)	295
AcoI	YGGCCR	3 cut(s)	208, 625, 643
AcsI	RAATTY	3 cut(s)	726, 981, 1006
AcyI	GRCGYC	1 cut(s)	317
AfaI	GTAC	1 cut(s)	854
AfiI	CCNNNNNNNGG	2 cut(s)	694, 778
AgsI	TTSAA	3 cut(s)	196, 353, 1043
AjnI	CCWGG	1 cut(s)	576
AjuI	GAANNNNNNNTTGG	2 cut(s)	519, 551
AleI	CACNNNNGTG	1 cut(s)	758
AluBI	AGCT	5 cut(s)	147, 215, 376, 888, 1059
AluI	AGCT	5 cut(s)	147, 215, 376, 888, 1059
Alw21I	GWGCWC	1 cut(s)	765
Alw26I	GTCTC	3 cut(s)	88, 236, 409
AlwI	GGATC	1 cut(s)	295
AoxI	GGCC	5 cut(s)	208, 460, 625, 637, 643
ApeKI	GCWGC	4 cut(s)	5, 147, 215, 431
ApoI	RAATTY	3 cut(s)	726, 981, 1006
ArsI	GACNNNNNNTTYG	4 cut(s)	689, 721, 789, 821
Asp700I	GAANNNNTTC	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	319
AspS9I	GGNCC	4 cut(s)	129, 299, 461, 841
AsuHPI	GGTGA	3 cut(s)	19, 768, 1012
AvaII	GGWCC	3 cut(s)	129, 299, 841
BalI	TGGCCA	3 cut(s)	210, 627, 645
BanI	GGYRCC	1 cut(s)	316
BbsI	GAAGAC	2 cut(s)	184, 747
Bbv12I	GWGCWC	1 cut(s)	765
BbvI	GCAGC	3 cut(s)	134, 202, 418
BccI	CCATC	3 cut(s)	260, 488, 937
BcgI	CGANNNNNNTGC	4 cut(s)	968, 978, 1002, 1012
BciT130I	CCWGG	1 cut(s)	578
BclI	TGATCA	1 cut(s)	936
BcoDI	GTCTC	3 cut(s)	88, 236, 409
BfaI	CTAG	2 cut(s)	144, 593
BfmI	CTRYAG	1 cut(s)	735
BfoI	RGCGCY	1 cut(s)	320
BisI	GCNGC	4 cut(s)	6, 148, 216, 432
BlsI	GCNGC	4 cut(s)	7, 149, 217, 433
Bme1390I	CCNGG	1 cut(s)	578
Bme18I	GGWCC	3 cut(s)	129, 299, 841
BmgT120I	GGNCC	4 cut(s)	129, 299, 461, 841
BmiI	GGNNCC	2 cut(s)	318, 970
BmrFI	CCNGG	1 cut(s)	578
BmsI	GCATC	1 cut(s)	586
BpiI	GAAGAC	2 cut(s)	184, 747
BpmI	CTGGAG	2 cut(s)	302, 955
BpuEI	CTTGAG	4 cut(s)	167, 355, 532, 704
BsaHI	GRCGYC	1 cut(s)	317
BsaJI	CCNNGG	4 cut(s)	426, 640, 693, 823
BsaWI	WCCGGW	1 cut(s)	778
BsaXI	ACNNNNNCTCC	1 cut(s)	1046
Bsc4I	CCNNNNNNNGG	2 cut(s)	694, 778
Bse1I	ACTGG	2 cut(s)	294, 970
Bse3DI	GCAATG	1 cut(s)	646
BseBI	CCWGG	1 cut(s)	578
BseDI	CCNNGG	4 cut(s)	426, 640, 693, 823
BseGI	GGATG	3 cut(s)	266, 499, 1054
BseLI	CCNNNNNNNGG	2 cut(s)	694, 778
BseMI	GCAATG	1 cut(s)	646
BseMII	CTCAG	2 cut(s)	99, 1056
BseNI	ACTGG	2 cut(s)	294, 970
BseRI	GAGGAG	3 cut(s)	643, 932, 1067
BseXI	GCAGC	3 cut(s)	134, 202, 418
BsgI	GTGCAG	1 cut(s)	1008
BshFI	GGCC	5 cut(s)	210, 462, 627, 639, 645
BshNI	GGYRCC	1 cut(s)	316
BsiHKAI	GWGCWC	1 cut(s)	765
BsiSI	CCGG	1 cut(s)	779
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	2 cut(s)	694, 778
BsmAI	GTCTC	3 cut(s)	88, 236, 409
BsmBI	CGTCTC	1 cut(s)	236
BsmFI	GGGAC	1 cut(s)	89
BsnI	GGCC	5 cut(s)	210, 462, 627, 639, 645
Bsp1286I	GDGCHC	1 cut(s)	765
Bsp1407I	TGTACA	1 cut(s)	852
Bsp143I	GATC	3 cut(s)	287, 808, 936
Bsp19I	CCATGG	1 cut(s)	693
BspACI	CCGC	1 cut(s)	820
BspANI	GGCC	5 cut(s)	210, 462, 627, 639, 645
BspCNI	CTCAG	2 cut(s)	98, 1057
BspHI	TCATGA	1 cut(s)	813
BspLI	GGNNCC	2 cut(s)	318, 970
BspMAI	CTGCAG	1 cut(s)	739
BspPI	GGATC	1 cut(s)	295
BspT107I	GGYRCC	1 cut(s)	316
BsrDI	GCAATG	1 cut(s)	646
BsrGI	TGTACA	1 cut(s)	852
BsrI	ACTGG	2 cut(s)	294, 970
BssECI	CCNNGG	4 cut(s)	426, 640, 693, 823
BssMI	GATC	3 cut(s)	287, 808, 936
BssNI	GRCGYC	1 cut(s)	317
BssT1I	CCWWGG	4 cut(s)	426, 640, 693, 823
Bst2UI	CCWGG	1 cut(s)	578
Bst4CI	ACNGT	1 cut(s)	760
Bst6I	CTCTTC	1 cut(s)	1038
BstACI	GRCGYC	1 cut(s)	317
BstAUI	TGTACA	1 cut(s)	852
BstC8I	GCNNGC	3 cut(s)	220, 224, 959
BstDEI	CTNAG	2 cut(s)	85, 1065
BstDSI	CCRYGG	1 cut(s)	693
BstF5I	GGATG	3 cut(s)	266, 499, 1054
BstH2I	RGCGCY	1 cut(s)	320
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	3 cut(s)	290, 811, 939
BstMAI	GTCTC	3 cut(s)	88, 236, 409
BstMBI	GATC	3 cut(s)	287, 808, 936
BstMWI	GCNNNNNNNGC	5 cut(s)	316, 431, 527, 558, 975
BstNI	CCWGG	1 cut(s)	578
BstSCI	CCNGG	1 cut(s)	576
BstSFI	CTRYAG	1 cut(s)	735
BstV1I	GCAGC	3 cut(s)	134, 202, 418
BstV2I	GAAGAC	2 cut(s)	184, 747
BstXI	CCANNNNNNTGG	2 cut(s)	218, 635
BsuRI	GGCC	5 cut(s)	210, 462, 627, 639, 645
BtgI	CCRYGG	1 cut(s)	693
BtsCI	GGATG	3 cut(s)	266, 499, 1054
BtsIMutI	CAGTG	2 cut(s)	301, 660
Cac8I	GCNNGC	3 cut(s)	220, 224, 959
CciI	TCATGA	1 cut(s)	813
CfoI	GCGC	1 cut(s)	319
Cfr13I	GGNCC	4 cut(s)	129, 299, 461, 841
Csp6I	GTAC	1 cut(s)	853
CspCI	CAANNNNNGTGG	4 cut(s)	373, 408, 589, 624
CviAII	CATG	3 cut(s)	242, 694, 814
CviQI	GTAC	1 cut(s)	853
DdeI	CTNAG	2 cut(s)	85, 1065
DinI	GGCGCC	1 cut(s)	318
DpnI	GATC	3 cut(s)	289, 810, 938
DpnII	GATC	3 cut(s)	287, 808, 936
EaeI	YGGCCR	3 cut(s)	208, 625, 643
Eam1104I	CTCTTC	1 cut(s)	1038
EarI	CTCTTC	1 cut(s)	1038
Eco130I	CCWWGG	4 cut(s)	426, 640, 693, 823
Eco32I	GATATC	2 cut(s)	418, 769
Eco47I	GGWCC	3 cut(s)	129, 299, 841
EcoRI	GAATTC	1 cut(s)	1006
EcoRII	CCWGG	1 cut(s)	576
EcoRV	GATATC	2 cut(s)	418, 769
EcoT14I	CCWWGG	4 cut(s)	426, 640, 693, 823
EgeI	GGCGCC	1 cut(s)	318
EheI	GGCGCC	1 cut(s)	318
ErhI	CCWWGG	4 cut(s)	426, 640, 693, 823
Esp3I	CGTCTC	1 cut(s)	236
FaeI	CATG	3 cut(s)	245, 697, 817
FaiI	YATR	6 cut(s)	167, 243, 471, 695, 815, 935
FalI	AAGNNNNNCTT	6 cut(s)	176, 208, 519, 551, 1010, 1042
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	3 cut(s)	241, 693, 813
FbaI	TGATCA	1 cut(s)	936
Fnu4HI	GCNGC	4 cut(s)	6, 148, 216, 432
FokI	GGATG	3 cut(s)	273, 506, 1061
Fsp4HI	GCNGC	4 cut(s)	6, 148, 216, 432
FspBI	CTAG	2 cut(s)	144, 593
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	4 cut(s)	6, 148, 216, 432
GsuI	CTGGAG	2 cut(s)	302, 955
HaeII	RGCGCY	1 cut(s)	320
HaeIII	GGCC	5 cut(s)	210, 462, 627, 639, 645
HapII	CCGG	1 cut(s)	779
HhaI	GCGC	1 cut(s)	319
Hin1I	GRCGYC	1 cut(s)	317
Hin1II	CATG	3 cut(s)	245, 697, 817
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HincII	GTYRAC	1 cut(s)	898
HindII	GTYRAC	1 cut(s)	898
HinfI	GANTC	2 cut(s)	140, 440
HpaI	GTTAAC	1 cut(s)	898
HpaII	CCGG	1 cut(s)	779
HphI	GGTGA	3 cut(s)	19, 768, 1012
Hpy166II	GTNNAC	4 cut(s)	299, 776, 855, 898
Hpy188I	TCNGA	6 cut(s)	88, 173, 415, 841, 1012, 1066
Hpy188III	TCNNGA	5 cut(s)	184, 814, 883, 940, 972
Hpy8I	GTNNAC	4 cut(s)	299, 776, 855, 898
Hpy99I	CGWCG	1 cut(s)	809
HpyAV	CCTTC	4 cut(s)	108, 142, 545, 667
HpyCH4III	ACNGT	1 cut(s)	760
HpyCH4IV	ACGT	1 cut(s)	804
HpyCH4V	TGCA	5 cut(s)	434, 509, 521, 737, 989
HpyF10VI	GCNNNNNNNGC	5 cut(s)	316, 431, 527, 558, 975
HpyF3I	CTNAG	2 cut(s)	85, 1065
HpySE526I	ACGT	1 cut(s)	804
Hsp92I	GRCGYC	1 cut(s)	317
Hsp92II	CATG	3 cut(s)	245, 697, 817
HspAI	GCGC	1 cut(s)	317
KasI	GGCGCC	1 cut(s)	316
Ksp22I	TGATCA	1 cut(s)	936
KspAI	GTTAAC	1 cut(s)	898
Kzo9I	GATC	3 cut(s)	287, 808, 936
LmnI	GCTCC	2 cut(s)	656, 974
Lsp1109I	GCAGC	3 cut(s)	134, 202, 418
LweI	GCATC	1 cut(s)	586
MaeI	CTAG	2 cut(s)	144, 593
MaeII	ACGT	1 cut(s)	804
MaeIII	GTNAC	1 cut(s)	1022
MalI	GATC	3 cut(s)	289, 810, 938
MboI	GATC	3 cut(s)	287, 808, 936
MboII	GAAGA	9 cut(s)	3, 6, 45, 60, 184, 498, 598, 752, 1055
MhlI	GDGCHC	1 cut(s)	765
MlsI	TGGCCA	3 cut(s)	210, 627, 645
MluCI	AATT	4 cut(s)	726, 950, 981, 1006
MluNI	TGGCCA	3 cut(s)	210, 627, 645
Mly113I	GGCGCC	1 cut(s)	317
MlyI	GAGTC	1 cut(s)	149
Mox20I	TGGCCA	3 cut(s)	210, 627, 645
MroXI	GAANNNNTTC	1 cut(s)	191
MscI	TGGCCA	3 cut(s)	210, 627, 645
MseI	TTAA	3 cut(s)	114, 897, 953
MslI	CAYNNNNRTG	2 cut(s)	240, 758
Msp20I	TGGCCA	3 cut(s)	210, 627, 645
MspI	CCGG	1 cut(s)	779
MspR9I	CCNGG	1 cut(s)	578
MvaI	CCWGG	1 cut(s)	578
MwoI	GCNNNNNNNGC	5 cut(s)	316, 431, 527, 558, 975
NarI	GGCGCC	1 cut(s)	317
NcoI	CCATGG	1 cut(s)	693
NdeII	GATC	3 cut(s)	287, 808, 936
NlaIII	CATG	3 cut(s)	245, 697, 817
NlaIV	GGNNCC	2 cut(s)	318, 970
OliI	CACNNNNGTG	1 cut(s)	758
PagI	TCATGA	1 cut(s)	813
PcsI	WCGNNNNNNNCGW	1 cut(s)	756
PdmI	GAANNNNTTC	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	440
PflFI	GACNNNGTC	1 cut(s)	878
PkrI	GCNGC	4 cut(s)	7, 149, 217, 433
PleI	GAGTC	1 cut(s)	148
PluTI	GGCGCC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	148
Psp6I	CCWGG	1 cut(s)	576
PspGI	CCWGG	1 cut(s)	576
PspN4I	GGNNCC	2 cut(s)	318, 970
PspPI	GGNCC	4 cut(s)	129, 299, 461, 841
PstI	CTGCAG	1 cut(s)	739
PsyI	GACNNNGTC	1 cut(s)	878
RsaI	GTAC	1 cut(s)	854
RsaNI	GTAC	1 cut(s)	853
RseI	CAYNNNNRTG	2 cut(s)	240, 758
SaqAI	TTAA	3 cut(s)	114, 897, 953
SatI	GCNGC	4 cut(s)	6, 148, 216, 432
Sau3AI	GATC	3 cut(s)	287, 808, 936
Sau96I	GGNCC	4 cut(s)	129, 299, 461, 841
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	578
SduI	GDGCHC	1 cut(s)	765
SfaNI	GCATC	1 cut(s)	586
SfcI	CTRYAG	1 cut(s)	735
SfoI	GGCGCC	1 cut(s)	318
SinI	GGWCC	3 cut(s)	129, 299, 841
SmiMI	CAYNNNNRTG	2 cut(s)	240, 758
SmlI	CTYRAG	4 cut(s)	182, 334, 547, 719
SmoI	CTYRAG	4 cut(s)	182, 334, 547, 719
Sse9I	AATT	4 cut(s)	726, 950, 981, 1006
SsiI	CCGC	1 cut(s)	820
SspDI	GGCGCC	1 cut(s)	316
SspMI	CTAG	2 cut(s)	144, 593
StyD4I	CCNGG	1 cut(s)	576
StyI	CCWWGG	4 cut(s)	426, 640, 693, 823
TaaI	ACNGT	1 cut(s)	760
TaiI	ACGT	1 cut(s)	807
TaqI	TCGA	3 cut(s)	765, 789, 807
TasI	AATT	4 cut(s)	726, 950, 981, 1006
TatI	WGTACW	1 cut(s)	852
TfiI	GAWTC	1 cut(s)	440
Tru1I	TTAA	3 cut(s)	114, 897, 953
Tru9I	TTAA	3 cut(s)	114, 897, 953
TscAI	CASTG	2 cut(s)	301, 667
TseI	GCWGC	4 cut(s)	5, 147, 215, 431
TspDTI	ATGAA	2 cut(s)	12, 830
TspGWI	ACGGA	3 cut(s)	359, 761, 872
TspRI	CASTG	2 cut(s)	301, 667
Tth111I	GACNNNGTC	1 cut(s)	878
VpaK11BI	GGWCC	3 cut(s)	129, 299, 841
XapI	RAATTY	3 cut(s)	726, 981, 1006
XmnI	GAANNNNTTC	1 cut(s)	191
XspI	CTAG	2 cut(s)	144, 593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.