FvH4_2g14400

SnoaL-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0017983
Physical Location & Seq
Reverse (-)
12692060 .. 12694131
2072 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g14400.t1

Sequence Viewer

Length: 789 bp
ATGGCCTCACTGACCCAACATTCAGTAGGAGCTTATTGCCGCAGACCAAAGAAAAGCTCCATCAACATCAACGCATCTTCTGCTACTTCGACGCTCAATGCCAAAATTCATAGGGCCAGCCTTGCTTCTTTTCAGTTACCATTGAACATCGAAAAGAAGGCGGCTTTGATTACAATTTCGAATGTTAACCGAAAAAAACGCAAAGATGAACAATGGAGAGTGTTCGGAAGCGATGACGGATCATGTGGGATTGCGCCTATGCCAGCACCTCCTTCTGCTGCGGAGTTGGCTAAAGATTTCTACAATGCCATCAATTCCAAGGACATAAACAAACTGGATCCACTTCTAGCTGAGGACTGCCAGTATCAGGATCTTGTGTTTTACGTTCCCTTTGAAGGAAAAAAACAGGGTGTTCTCCCCTTCTTTGCCAAGATGATGGATGCAATGGGACCTAATATCGTTTTCGTTATTGACAATGCGACAGAAGGAGAAAAATTGACTGCCAGTGTGATTTGGCATCTAGAGTGGAAAAATAAAGTCATACCCTTCGCCAAAGGTTGCACATTTTTCGAATACGAAGAATTTGATGGACGTCTTTTGCTTAGGAAAGCAACCGGCATGGCAGAAATTCCATTCAAACCTGGTGATTTCGTATTGAAATTTTTAAAGTCAGCAAGTACCTTCTTCGATCTCTACCCAATGGCAGCAGAAGCGTTATTGAAATCTCATGAGGAAGAACCGCATGAAGGATTATCTTCGTTACTAGACAAGTTTTTTGGCAGGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SnoaL_2

Protein Analysis

263

Amino Acids

29.26

Weight (kDa)

8.23

Isoelectric Point (pI)

48.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SnoaL_2 PF12680 98 - 198 7.2e-08 SnoaL-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017983)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g14400
prunus_persica Prupe.8G022100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0276731
rosa_laevigata RLG00000013368
rosa_multiflora Rmu_sc0004481.1_g000027
rosa_roxburghii Rroxscaffold_7G00192020
rosa_rugosa Rorug06G0103300
rosa_samantha Rh6AG213600 Rh6BG218500 Rh6DG211200
rosa_wichuraiana Rw6G018680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 595
AciI CCGC 4 cut(s) 40, 161, 281, 740
AclWI GGATC 4 cut(s) 247, 332, 345, 378
AcsI RAATTY 4 cut(s) 105, 581, 627, 659
AcyI GRCGYC 1 cut(s) 592
AfaI GTAC 1 cut(s) 679
AfiI CCNNNNNNNGG 3 cut(s) 367, 395, 746
AgsI TTSAA 5 cut(s) 145, 395, 637, 658, 721
AjnI CCWGG 1 cut(s) 640
AluBI AGCT 3 cut(s) 32, 57, 350
AluI AGCT 3 cut(s) 32, 57, 350
AlwI GGATC 4 cut(s) 247, 332, 345, 378
AlwNI CAGNNNCTG 1 cut(s) 786
AoxI GGCC 2 cut(s) 3, 114
ApeKI GCWGC 2 cut(s) 278, 704
ApoI RAATTY 4 cut(s) 105, 581, 627, 659
ArsI GACNNNNNNTTYG 1 cut(s) 758
AspLEI GCGC 1 cut(s) 256
AspS9I GGNCC 2 cut(s) 114, 449
AsuHPI GGTGA 1 cut(s) 656
AsuII TTCGAA 2 cut(s) 179, 570
AvaII GGWCC 1 cut(s) 449
BamHI GGATCC 1 cut(s) 337
BbvCI CCTCAGC 1 cut(s) 351
BbvI GCAGC 2 cut(s) 265, 716
BccI CCATC 4 cut(s) 68, 317, 430, 581
BcgI CGANNNNNNTGC 2 cut(s) 550, 584
BciT130I CCWGG 1 cut(s) 642
BfaI CTAG 3 cut(s) 347, 521, 764
BisI GCNGC 4 cut(s) 40, 162, 279, 705
BlsI GCNGC 4 cut(s) 41, 163, 280, 706
Bme1390I CCNGG 1 cut(s) 642
Bme18I GGWCC 1 cut(s) 449
BmgT120I GGNCC 2 cut(s) 114, 449
BmiI GGNNCC 2 cut(s) 339, 450
BmrFI CCNGG 1 cut(s) 642
BmsI GCATC 3 cut(s) 83, 430, 526
Bpu10I CCTNAGC 2 cut(s) 351, 602
Bpu14I TTCGAA 2 cut(s) 179, 570
BsaHI GRCGYC 1 cut(s) 592
BsaJI CCNNGG 1 cut(s) 318
Bsc4I CCNNNNNNNGG 3 cut(s) 367, 395, 746
Bse118I RCCGGY 1 cut(s) 614
Bse1I ACTGG 3 cut(s) 339, 361, 504
Bse3DI GCAATG 1 cut(s) 450
BseBI CCWGG 1 cut(s) 642
BseDI CCNNGG 1 cut(s) 318
BseGI GGATG 1 cut(s) 445
BseLI CCNNNNNNNGG 3 cut(s) 367, 395, 746
BseMI GCAATG 1 cut(s) 450
BseMII CTCAG 1 cut(s) 342
BseNI ACTGG 3 cut(s) 339, 361, 504
BseXI GCAGC 2 cut(s) 265, 716
BshFI GGCC 2 cut(s) 5, 116
BsiSI CCGG 1 cut(s) 615
BslFI GGGAC 1 cut(s) 462
BslI CCNNNNNNNGG 3 cut(s) 367, 395, 746
BsmFI GGGAC 1 cut(s) 462
BsnI GGCC 2 cut(s) 5, 116
Bsp119I TTCGAA 2 cut(s) 179, 570
Bsp143I GATC 4 cut(s) 239, 337, 370, 688
BspACI CCGC 4 cut(s) 40, 161, 281, 740
BspANI GGCC 2 cut(s) 5, 116
BspCNI CTCAG 1 cut(s) 343
BspHI TCATGA 1 cut(s) 727
BspLI GGNNCC 2 cut(s) 339, 450
BspPI GGATC 4 cut(s) 247, 332, 345, 378
BspT104I TTCGAA 2 cut(s) 179, 570
BsrDI GCAATG 1 cut(s) 450
BsrFI RCCGGY 1 cut(s) 614
BsrI ACTGG 3 cut(s) 339, 361, 504
BssAI RCCGGY 1 cut(s) 614
BssECI CCNNGG 1 cut(s) 318
BssMI GATC 4 cut(s) 239, 337, 370, 688
BssNI GRCGYC 1 cut(s) 592
BssT1I CCWWGG 1 cut(s) 318
Bst2UI CCWGG 1 cut(s) 642
BstACI GRCGYC 1 cut(s) 592
BstAPI GCANNNNNTGC 1 cut(s) 80
BstBI TTCGAA 2 cut(s) 179, 570
BstC8I GCNNGC 3 cut(s) 118, 264, 782
BstDEI CTNAG 2 cut(s) 351, 602
BstF5I GGATG 1 cut(s) 445
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 4 cut(s) 242, 340, 373, 691
BstMBI GATC 4 cut(s) 239, 337, 370, 688
BstMWI GCNNNNNNNGC 4 cut(s) 80, 122, 287, 710
BstNI CCWGG 1 cut(s) 642
BstSCI CCNGG 1 cut(s) 640
BstV1I GCAGC 2 cut(s) 265, 716
BstX2I RGATCY 2 cut(s) 337, 370
BstXI CCANNNNNNTGG 1 cut(s) 436
BstYI RGATCY 2 cut(s) 337, 370
BsuRI GGCC 2 cut(s) 5, 116
BtgZI GCGATG 1 cut(s) 246
BtsCI GGATG 1 cut(s) 445
BtsIMutI CAGTG 3 cut(s) 8, 511, 784
Cac8I GCNNGC 3 cut(s) 118, 264, 782
CaiI CAGNNNCTG 1 cut(s) 786
CciI TCATGA 1 cut(s) 727
CfoI GCGC 1 cut(s) 256
Cfr10I RCCGGY 1 cut(s) 614
Cfr13I GGNCC 2 cut(s) 114, 449
CseI GACGC 1 cut(s) 100
CsiI ACCWGGT 1 cut(s) 640
Csp6I GTAC 1 cut(s) 678
CviAII CATG 4 cut(s) 243, 619, 728, 743
CviJI RGCY 8 cut(s) 5, 32, 57, 116, 120, 164, 290, 350
CviKI_1 RGCY 8 cut(s) 5, 32, 57, 116, 120, 164, 290, 350
CviQI GTAC 1 cut(s) 678
DdeI CTNAG 2 cut(s) 351, 602
DpnI GATC 4 cut(s) 241, 339, 372, 690
DpnII GATC 4 cut(s) 239, 337, 370, 688
DraI TTTAAA 1 cut(s) 666
Eco130I CCWWGG 1 cut(s) 318
Eco47I GGWCC 1 cut(s) 449
EcoO109I RGGNCCY 1 cut(s) 449
EcoRII CCWGG 1 cut(s) 640
EcoT14I CCWWGG 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 4 cut(s) 246, 622, 731, 746
FaiI YATR 8 cut(s) 111, 244, 260, 326, 542, 620, 729, 744
FaqI GGGAC 1 cut(s) 462
FatI CATG 4 cut(s) 242, 618, 727, 742
Fnu4HI GCNGC 4 cut(s) 40, 162, 279, 705
FokI GGATG 1 cut(s) 452
Fsp4HI GCNGC 4 cut(s) 40, 162, 279, 705
FspBI CTAG 3 cut(s) 347, 521, 764
GlaI GCGC 1 cut(s) 255
GluI GCNGC 4 cut(s) 40, 162, 279, 705
HaeIII GGCC 2 cut(s) 5, 116
HapII CCGG 1 cut(s) 615
HgaI GACGC 1 cut(s) 100
HhaI GCGC 1 cut(s) 256
Hin1I GRCGYC 1 cut(s) 592
Hin1II CATG 4 cut(s) 246, 622, 731, 746
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HpaI GTTAAC 1 cut(s) 187
HpaII CCGG 1 cut(s) 615
HphI GGTGA 1 cut(s) 656
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 1 cut(s) 227
Hpy188III TCNNGA 3 cut(s) 368, 521, 728
Hpy8I GTNNAC 1 cut(s) 187
Hpy99I CGWCG 1 cut(s) 94
HpyAV CCTTC 8 cut(s) 151, 282, 389, 430, 479, 556, 691, 740
HpyCH4IV ACGT 2 cut(s) 384, 592
HpyCH4V TGCA 2 cut(s) 443, 561
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 122, 287, 710
HpyF3I CTNAG 2 cut(s) 351, 602
HpySE526I ACGT 2 cut(s) 384, 592
Hsp92I GRCGYC 1 cut(s) 592
Hsp92II CATG 4 cut(s) 246, 622, 731, 746
HspAI GCGC 1 cut(s) 254
KspAI GTTAAC 1 cut(s) 187
Kzo9I GATC 4 cut(s) 239, 337, 370, 688
LmnI GCTCC 2 cut(s) 29, 62
Lsp1109I GCAGC 2 cut(s) 265, 716
LweI GCATC 3 cut(s) 83, 430, 526
MabI ACCWGGT 1 cut(s) 640
MaeI CTAG 3 cut(s) 347, 521, 764
MaeII ACGT 2 cut(s) 384, 592
MaeIII GTNAC 2 cut(s) 135, 759
MalI GATC 4 cut(s) 241, 339, 372, 690
MboI GATC 4 cut(s) 239, 337, 370, 688
MboII GAAGA 5 cut(s) 69, 590, 676, 746, 747
MflI RGATCY 2 cut(s) 337, 370
MluCI AATT 7 cut(s) 105, 174, 313, 494, 581, 627, 659
MnlI CCTC 4 cut(s) 16, 279, 346, 724
MseI TTAA 2 cut(s) 186, 665
MspI CCGG 1 cut(s) 615
MspR9I CCNGG 1 cut(s) 642
MvaI CCWGG 1 cut(s) 642
MwoI GCNNNNNNNGC 4 cut(s) 80, 122, 287, 710
NdeII GATC 4 cut(s) 239, 337, 370, 688
NlaIII CATG 4 cut(s) 246, 622, 731, 746
NlaIV GGNNCC 2 cut(s) 339, 450
NspV TTCGAA 2 cut(s) 179, 570
PagI TCATGA 1 cut(s) 727
PkrI GCNGC 4 cut(s) 41, 163, 280, 706
PpuMI RGGWCCY 1 cut(s) 449
Psp5II RGGWCCY 1 cut(s) 449
Psp6I CCWGG 1 cut(s) 640
PspGI CCWGG 1 cut(s) 640
PspN4I GGNNCC 2 cut(s) 339, 450
PspPI GGNCC 2 cut(s) 114, 449
PspPPI RGGWCCY 1 cut(s) 449
PstNI CAGNNNCTG 1 cut(s) 786
PsuI RGATCY 2 cut(s) 337, 370
RsaI GTAC 1 cut(s) 679
RsaNI GTAC 1 cut(s) 678
SaqAI TTAA 2 cut(s) 186, 665
SatI GCNGC 4 cut(s) 40, 162, 279, 705
Sau3AI GATC 4 cut(s) 239, 337, 370, 688
Sau96I GGNCC 2 cut(s) 114, 449
ScrFI CCNGG 1 cut(s) 642
SexAI ACCWGGT 1 cut(s) 640
SfaNI GCATC 3 cut(s) 83, 430, 526
SfuI TTCGAA 2 cut(s) 179, 570
SinI GGWCC 1 cut(s) 449
Sse9I AATT 7 cut(s) 105, 174, 313, 494, 581, 627, 659
SsiI CCGC 4 cut(s) 40, 161, 281, 740
SspMI CTAG 3 cut(s) 347, 521, 764
StyD4I CCNGG 1 cut(s) 640
StyI CCWWGG 1 cut(s) 318
TaiI ACGT 2 cut(s) 387, 595
TaqI TCGA 5 cut(s) 89, 150, 179, 570, 687
TasI AATT 7 cut(s) 105, 174, 313, 494, 581, 627, 659
TauI GCSGC 2 cut(s) 42, 164
Tru1I TTAA 2 cut(s) 186, 665
Tru9I TTAA 2 cut(s) 186, 665
TscAI CASTG 2 cut(s) 15, 511
TseI GCWGC 2 cut(s) 278, 704
TspDTI ATGAA 3 cut(s) 98, 222, 759
TspGWI ACGGA 1 cut(s) 252
TspRI CASTG 2 cut(s) 15, 511
VpaK11BI GGWCC 1 cut(s) 449
XapI RAATTY 4 cut(s) 105, 581, 627, 659
XbaI TCTAGA 1 cut(s) 520
XspI CTAG 3 cut(s) 347, 521, 764
ZraI GACGTC 1 cut(s) 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.