Rh6DG211200

SnoaL-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0017983
Physical Location & Seq
Reverse (-)
37671299 .. 37675385
4087 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG211200.1

Sequence Viewer

Length: 750 bp
ATGGCCTCACTAACCCAACATTCAATAGGAGCTTATTGCCTCAGATCAAAGAAAAGCTCCATCAACATCAACACAACTACTGCTACCGCAACACTCGATGCGAAAAGTCATAAGGCCAGTACTACTACTTTTCAGTTACCATTGACCATCGAAAAGATGGCTTCGATTACGATTTCAAATGTTAATGGAAAAAAACGCAAAGATGAACAATGGAGAGTGTTCGGAAGTGATGATGATGGATCGTGTGGGATAGCGCCTATCCCAGCACCTCCTTCTGTGGCGGAGTTGGCTAAAGATTTCTACAATGCCATCAATTCCAAGGACATAAGCAAATTGGATCCACTTCTAGCAGATAACTGCCAGTATCAGGATCTTGTGTTTTACGTTCCCTTTGAAGGAAAAAAACAGGGTGTTATCCCCTTCTTTGCCAAGATGATGGAGGCAATGGGACCCAATATTGTTTTCGTCATTGATAATGTCACGGAAGGCGCAAAATTGACTGCCAGTGTAATTTGGCATCTAGAGTGGAAACATAAAGTTATACCCTTCGCCACGGGCTGCACATTCTTCGAATACGAAGAATATAATGATGGACGTCTCTTGCTTAGGAAAGCAACCGGCATGGCAGAAATCCCATTCAAACCTGGTGATTTCGTATTGAAAGTTTTAAAGTCAGCCAGTACCTTCTTCGATCTCTACCCAATGGCAGCAGATGGTAAGCATCGATTCAGTGAAATACTCCATCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SnoaL_2

Protein Analysis

249

Amino Acids

27.61

Weight (kDa)

7.66

Isoelectric Point (pI)

41.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SnoaL_2 PF12680 98 - 193 1.5e-07 SnoaL-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017983)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g14400
prunus_persica Prupe.8G022100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0276731
rosa_laevigata RLG00000013368
rosa_multiflora Rmu_sc0004481.1_g000027
rosa_roxburghii Rroxscaffold_7G00192020
rosa_rugosa Rorug06G0103300
rosa_samantha Rh6AG213600 Rh6BG218500 Rh6DG211200
rosa_wichuraiana Rw6G018680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 598
AciI CCGC 2 cut(s) 87, 281
AclWI GGATC 4 cut(s) 247, 332, 345, 378
AcyI GRCGYC 1 cut(s) 595
AfaI GTAC 2 cut(s) 121, 682
AfiI CCNNNNNNNGG 2 cut(s) 367, 395
AgsI TTSAA 5 cut(s) 24, 177, 395, 640, 661
AjnI CCWGG 1 cut(s) 643
AjuI GAANNNNNNNTTGG 2 cut(s) 446, 478
AluBI AGCT 2 cut(s) 32, 57
AluI AGCT 2 cut(s) 32, 57
Alw26I GTCTC 1 cut(s) 602
AlwI GGATC 4 cut(s) 247, 332, 345, 378
AoxI GGCC 2 cut(s) 3, 114
ApeKI GCWGC 2 cut(s) 558, 707
AspLEI GCGC 2 cut(s) 256, 491
AspS9I GGNCC 1 cut(s) 449
AsuHPI GGTGA 1 cut(s) 659
AsuII TTCGAA 1 cut(s) 570
AvaII GGWCC 1 cut(s) 449
BamHI GGATCC 1 cut(s) 337
BbvI GCAGC 2 cut(s) 545, 719
BccI CCATC 8 cut(s) 68, 151, 155, 230, 317, 430, 584, 707
BcgI CGANNNNNNTGC 2 cut(s) 550, 584
BciT130I CCWGG 1 cut(s) 645
BcoDI GTCTC 1 cut(s) 602
BfaI CTAG 2 cut(s) 347, 521
BfoI RGCGCY 1 cut(s) 257
BisI GCNGC 2 cut(s) 559, 708
BlsI GCNGC 2 cut(s) 560, 709
BmcAI AGTACT 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 645
Bme18I GGWCC 1 cut(s) 449
BmgT120I GGNCC 1 cut(s) 449
BmiI GGNNCC 3 cut(s) 339, 450, 451
BmrFI CCNGG 1 cut(s) 645
BmsI GCATC 3 cut(s) 88, 526, 730
Bpu10I CCTNAGC 1 cut(s) 605
Bpu14I TTCGAA 1 cut(s) 570
Bsa29I ATCGAT 1 cut(s) 724
BsaHI GRCGYC 1 cut(s) 595
BsaJI CCNNGG 2 cut(s) 318, 552
Bsc4I CCNNNNNNNGG 2 cut(s) 367, 395
Bse118I RCCGGY 1 cut(s) 617
Bse1I ACTGG 4 cut(s) 117, 361, 504, 678
Bse3DI GCAATG 1 cut(s) 450
BseBI CCWGG 1 cut(s) 645
BseCI ATCGAT 1 cut(s) 724
BseDI CCNNGG 2 cut(s) 318, 552
BseGI GGATG 1 cut(s) 742
BseLI CCNNNNNNNGG 2 cut(s) 367, 395
BseMI GCAATG 1 cut(s) 450
BseMII CTCAG 1 cut(s) 55
BseNI ACTGG 4 cut(s) 117, 361, 504, 678
BseXI GCAGC 2 cut(s) 545, 719
BseYI CCCAGC 1 cut(s) 262
BsgI GTGCAG 1 cut(s) 544
BshFI GGCC 2 cut(s) 5, 116
BshVI ATCGAT 1 cut(s) 724
BsiSI CCGG 1 cut(s) 618
BslFI GGGAC 1 cut(s) 462
BslI CCNNNNNNNGG 2 cut(s) 367, 395
BsmAI GTCTC 1 cut(s) 602
BsmBI CGTCTC 1 cut(s) 602
BsmFI GGGAC 1 cut(s) 462
BsnI GGCC 2 cut(s) 5, 116
Bsp119I TTCGAA 1 cut(s) 570
Bsp143I GATC 5 cut(s) 44, 239, 337, 370, 691
BspACI CCGC 2 cut(s) 87, 281
BspANI GGCC 2 cut(s) 5, 116
BspCNI CTCAG 1 cut(s) 54
BspDI ATCGAT 1 cut(s) 724
BspLI GGNNCC 3 cut(s) 339, 450, 451
BspPI GGATC 4 cut(s) 247, 332, 345, 378
BspT104I TTCGAA 1 cut(s) 570
BsrDI GCAATG 1 cut(s) 450
BsrFI RCCGGY 1 cut(s) 617
BsrI ACTGG 4 cut(s) 117, 361, 504, 678
BssAI RCCGGY 1 cut(s) 617
BssECI CCNNGG 2 cut(s) 318, 552
BssMI GATC 5 cut(s) 44, 239, 337, 370, 691
BssNI GRCGYC 1 cut(s) 595
BssT1I CCWWGG 1 cut(s) 318
Bst2UI CCWGG 1 cut(s) 645
BstACI GRCGYC 1 cut(s) 595
BstBI TTCGAA 1 cut(s) 570
BstDEI CTNAG 3 cut(s) 41, 605, 747
BstDSI CCRYGG 1 cut(s) 552
BstF5I GGATG 1 cut(s) 742
BstH2I RGCGCY 1 cut(s) 257
BstHHI GCGC 2 cut(s) 256, 491
BstKTI GATC 5 cut(s) 47, 242, 340, 373, 694
BstMAI GTCTC 1 cut(s) 602
BstMBI GATC 5 cut(s) 44, 239, 337, 370, 691
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstNI CCWGG 1 cut(s) 645
BstSCI CCNGG 1 cut(s) 643
BstV1I GCAGC 2 cut(s) 545, 719
BstX2I RGATCY 2 cut(s) 337, 370
BstXI CCANNNNNNTGG 1 cut(s) 436
BstYI RGATCY 2 cut(s) 337, 370
Bsu15I ATCGAT 1 cut(s) 724
BsuRI GGCC 2 cut(s) 5, 116
BsuTUI ATCGAT 1 cut(s) 724
BtgI CCRYGG 1 cut(s) 552
BtsCI GGATG 1 cut(s) 742
BtsIMutI CAGTG 2 cut(s) 511, 736
CfoI GCGC 2 cut(s) 256, 491
Cfr10I RCCGGY 1 cut(s) 617
Cfr13I GGNCC 1 cut(s) 449
ClaI ATCGAT 1 cut(s) 724
CsiI ACCWGGT 1 cut(s) 643
Csp6I GTAC 2 cut(s) 120, 681
CviAII CATG 1 cut(s) 622
CviJI RGCY 8 cut(s) 5, 32, 57, 116, 161, 290, 558, 677
CviKI_1 RGCY 8 cut(s) 5, 32, 57, 116, 161, 290, 558, 677
CviQI GTAC 2 cut(s) 120, 681
DdeI CTNAG 3 cut(s) 41, 605, 747
DpnI GATC 5 cut(s) 46, 241, 339, 372, 693
DpnII GATC 5 cut(s) 44, 239, 337, 370, 691
DraI TTTAAA 1 cut(s) 669
EciI GGCGGA 1 cut(s) 296
Eco130I CCWWGG 1 cut(s) 318
Eco47I GGWCC 1 cut(s) 449
EcoO109I RGGNCCY 1 cut(s) 449
EcoRII CCWGG 1 cut(s) 643
EcoT14I CCWWGG 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 318
Esp3I CGTCTC 1 cut(s) 602
FaeI CATG 1 cut(s) 625
FaiI YATR 6 cut(s) 111, 326, 534, 542, 585, 623
FaqI GGGAC 1 cut(s) 462
FatI CATG 1 cut(s) 621
Fnu4HI GCNGC 2 cut(s) 559, 708
FokI GGATG 1 cut(s) 729
Fsp4HI GCNGC 2 cut(s) 559, 708
FspBI CTAG 2 cut(s) 347, 521
GlaI GCGC 2 cut(s) 255, 490
GluI GCNGC 2 cut(s) 559, 708
GsaI CCCAGC 1 cut(s) 266
HaeII RGCGCY 1 cut(s) 257
HaeIII GGCC 2 cut(s) 5, 116
HapII CCGG 1 cut(s) 618
HhaI GCGC 2 cut(s) 256, 491
Hin1I GRCGYC 1 cut(s) 595
Hin1II CATG 1 cut(s) 625
Hin6I GCGC 2 cut(s) 254, 489
HinP1I GCGC 2 cut(s) 254, 489
HinfI GANTC 1 cut(s) 726
HpaII CCGG 1 cut(s) 618
HphI GGTGA 1 cut(s) 659
Hpy188I TCNGA 2 cut(s) 44, 224
Hpy188III TCNNGA 2 cut(s) 368, 521
HpyAV CCTTC 6 cut(s) 282, 389, 430, 479, 556, 694
HpyCH4IV ACGT 2 cut(s) 384, 595
HpyCH4V TGCA 1 cut(s) 561
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 3 cut(s) 41, 605, 747
HpySE526I ACGT 2 cut(s) 384, 595
Hsp92I GRCGYC 1 cut(s) 595
Hsp92II CATG 1 cut(s) 625
HspAI GCGC 2 cut(s) 254, 489
KflI GGGWCCC 1 cut(s) 449
Kzo9I GATC 5 cut(s) 44, 239, 337, 370, 691
LmnI GCTCC 2 cut(s) 29, 62
Lsp1109I GCAGC 2 cut(s) 545, 719
LweI GCATC 3 cut(s) 88, 526, 730
MabI ACCWGGT 1 cut(s) 643
MaeI CTAG 2 cut(s) 347, 521
MaeII ACGT 2 cut(s) 384, 595
MaeIII GTNAC 2 cut(s) 135, 478
MalI GATC 5 cut(s) 46, 241, 339, 372, 693
MboI GATC 5 cut(s) 44, 239, 337, 370, 691
MboII GAAGA 3 cut(s) 559, 590, 679
MflI RGATCY 2 cut(s) 337, 370
MluCI AATT 4 cut(s) 313, 332, 494, 510
MnlI CCTC 4 cut(s) 16, 50, 279, 433
MseI TTAA 2 cut(s) 183, 668
MspI CCGG 1 cut(s) 618
MspR9I CCNGG 1 cut(s) 645
MvaI CCWGG 1 cut(s) 645
MwoI GCNNNNNNNGC 1 cut(s) 287
NdeII GATC 5 cut(s) 44, 239, 337, 370, 691
NlaIII CATG 1 cut(s) 625
NlaIV GGNNCC 3 cut(s) 339, 450, 451
NmuCI GTSAC 1 cut(s) 478
NspV TTCGAA 1 cut(s) 570
PfeI GAWTC 1 cut(s) 726
PkrI GCNGC 2 cut(s) 560, 709
PpuMI RGGWCCY 1 cut(s) 449
Psp5II RGGWCCY 1 cut(s) 449
Psp6I CCWGG 1 cut(s) 643
PspFI CCCAGC 1 cut(s) 262
PspGI CCWGG 1 cut(s) 643
PspN4I GGNNCC 3 cut(s) 339, 450, 451
PspPI GGNCC 1 cut(s) 449
PspPPI RGGWCCY 1 cut(s) 449
PsuI RGATCY 2 cut(s) 337, 370
RsaI GTAC 2 cut(s) 121, 682
RsaNI GTAC 2 cut(s) 120, 681
SaqAI TTAA 2 cut(s) 183, 668
SatI GCNGC 2 cut(s) 559, 708
Sau3AI GATC 5 cut(s) 44, 239, 337, 370, 691
Sau96I GGNCC 1 cut(s) 449
ScaI AGTACT 1 cut(s) 121
ScrFI CCNGG 1 cut(s) 645
SetI ASST 7 cut(s) 34, 59, 271, 387, 598, 646, 686
SexAI ACCWGGT 1 cut(s) 643
SfaNI GCATC 3 cut(s) 88, 526, 730
SfuI TTCGAA 1 cut(s) 570
SinI GGWCC 1 cut(s) 449
Sse9I AATT 4 cut(s) 313, 332, 494, 510
SsiI CCGC 2 cut(s) 87, 281
SspI AATATT 1 cut(s) 457
SspMI CTAG 2 cut(s) 347, 521
StyD4I CCNGG 1 cut(s) 643
StyI CCWWGG 1 cut(s) 318
TaiI ACGT 2 cut(s) 387, 598
TaqI TCGA 6 cut(s) 96, 150, 164, 570, 690, 724
TasI AATT 4 cut(s) 313, 332, 494, 510
TatI WGTACW 1 cut(s) 119
TfiI GAWTC 1 cut(s) 726
Tru1I TTAA 2 cut(s) 183, 668
Tru9I TTAA 2 cut(s) 183, 668
TscAI CASTG 2 cut(s) 511, 736
TseFI GTSAC 1 cut(s) 478
TseI GCWGC 2 cut(s) 558, 707
Tsp45I GTSAC 1 cut(s) 478
TspDTI ATGAA 1 cut(s) 219
TspGWI ACGGA 1 cut(s) 497
TspRI CASTG 2 cut(s) 511, 736
VpaK11BI GGWCC 1 cut(s) 449
XbaI TCTAGA 1 cut(s) 520
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
XspI CTAG 2 cut(s) 347, 521
ZraI GACGTC 1 cut(s) 596
ZrmI AGTACT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.