RLG00000013368

SnoaL-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0017983
Physical Location & Seq
Forward (+)
30376185 .. 30379382
3198 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013368

Sequence Viewer

Length: 798 bp
ATGGCCTCACTAACCCAACATTCAATAGGAGCTTATTGCCTCAGATCAAAGAAAAGCTCCATCAACATCAACATCAACACAACTACTGCTACCGCAACACTCAATGCGAAAAGTCATAAGGCCAGTACTACTACTTTTCAGTTACCATTGACCATCGAAAAGATGGCTTCGATTACGATTTCAAATGTTAATGGAAAAAAACGCAAAGACGAACAATGGAGAGTGTTCGGAAGTGATGATGATGGATCGTGTGGGATAGCGCCTATGCCAGCACCTCCTTCTGCGGGGGAGTTGGCTAAAGATTTCTACAATGCCATCAATTCCAAGGACATAAGCAAATTGGATCCACTTCTAGCAGATAACTGCCAGTATCAGGATCTTGTGTTTTACGTTCCCTTTGAAGGAAAAAAACAGGGTGTTATCCCCTTCTTTGCCAAGATGATGGATGCAATGGGACCCAATATTGTTTTCGTCATTGATAATGTCACGGAAGGCGCAAAATTGACTGCCAGTGTAATTTGGCATCTAGAGTGGAAACATAAAGTCATACCCTTCGCCACGGGCTGCACATTCTTCGAATACGAAGAATATGATGATGGACGTCTCTTGCTTAGGAAAGCAACCGGCATGGCAGAAATCCCATTCAAACCTGGTGATTTCGTATTGAAAGTTTTAAAGTCAGCAAGTACCTTCTTCGATCTCTACCCAATGGCAGCAGAAGCTTTATTGAAATCTCATGAGGATGAACCGCACGAAGGATTATCTTCATTACTAGATAAGCTTTTTGGCAAGCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SnoaL_2

Protein Analysis

266

Amino Acids

29.31

Weight (kDa)

6.6

Isoelectric Point (pI)

43.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SnoaL_2 PF12680 100 - 195 3e-07 SnoaL-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017983)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g14400
prunus_persica Prupe.8G022100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0276731
rosa_laevigata RLG00000013368
rosa_multiflora Rmu_sc0004481.1_g000027
rosa_roxburghii Rroxscaffold_7G00192020
rosa_rugosa Rorug06G0103300
rosa_samantha Rh6AG213600 Rh6BG218500 Rh6DG211200
rosa_wichuraiana Rw6G018680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 604
AciI CCGC 3 cut(s) 93, 284, 749
AclWI GGATC 4 cut(s) 253, 338, 351, 384
AcyI GRCGYC 1 cut(s) 601
AfaI GTAC 2 cut(s) 127, 688
AfeI AGCGCT 1 cut(s) 794
AfiI CCNNNNNNNGG 4 cut(s) 284, 373, 401, 755
AgsI TTSAA 6 cut(s) 24, 183, 401, 646, 667, 730
AjnI CCWGG 1 cut(s) 649
AjuI GAANNNNNNNTTGG 2 cut(s) 452, 484
AluBI AGCT 4 cut(s) 32, 57, 722, 781
AluI AGCT 4 cut(s) 32, 57, 722, 781
Alw26I GTCTC 1 cut(s) 608
AlwI GGATC 4 cut(s) 253, 338, 351, 384
Aor51HI AGCGCT 1 cut(s) 794
AoxI GGCC 2 cut(s) 3, 120
ApeKI GCWGC 2 cut(s) 564, 713
AspLEI GCGC 3 cut(s) 262, 497, 795
AspS9I GGNCC 1 cut(s) 455
AsuHPI GGTGA 1 cut(s) 665
AsuII TTCGAA 1 cut(s) 576
AvaII GGWCC 1 cut(s) 455
BamHI GGATCC 1 cut(s) 343
BbvI GCAGC 2 cut(s) 551, 725
BccI CCATC 7 cut(s) 68, 157, 161, 236, 323, 436, 590
BcgI CGANNNNNNTGC 2 cut(s) 556, 590
BciT130I CCWGG 1 cut(s) 651
BcoDI GTCTC 1 cut(s) 608
BfaI CTAG 3 cut(s) 353, 527, 773
BfoI RGCGCY 2 cut(s) 263, 796
BisI GCNGC 2 cut(s) 565, 714
BlsI GCNGC 2 cut(s) 566, 715
BmcAI AGTACT 1 cut(s) 127
Bme1390I CCNGG 1 cut(s) 651
Bme18I GGWCC 1 cut(s) 455
BmgT120I GGNCC 1 cut(s) 455
BmiI GGNNCC 3 cut(s) 345, 456, 457
BmrFI CCNGG 1 cut(s) 651
BmsI GCATC 2 cut(s) 436, 532
Bpu10I CCTNAGC 1 cut(s) 611
Bpu14I TTCGAA 1 cut(s) 576
BsaHI GRCGYC 1 cut(s) 601
BsaJI CCNNGG 2 cut(s) 324, 558
Bsc4I CCNNNNNNNGG 4 cut(s) 284, 373, 401, 755
Bse118I RCCGGY 1 cut(s) 623
Bse1I ACTGG 3 cut(s) 123, 367, 510
Bse3DI GCAATG 1 cut(s) 456
BseBI CCWGG 1 cut(s) 651
BseDI CCNNGG 2 cut(s) 324, 558
BseGI GGATG 2 cut(s) 451, 748
BseLI CCNNNNNNNGG 4 cut(s) 284, 373, 401, 755
BseMI GCAATG 1 cut(s) 456
BseMII CTCAG 1 cut(s) 55
BseNI ACTGG 3 cut(s) 123, 367, 510
BseXI GCAGC 2 cut(s) 551, 725
BsgI GTGCAG 1 cut(s) 550
BshFI GGCC 2 cut(s) 5, 122
BsiSI CCGG 1 cut(s) 624
BslFI GGGAC 1 cut(s) 468
BslI CCNNNNNNNGG 4 cut(s) 284, 373, 401, 755
BsmAI GTCTC 1 cut(s) 608
BsmBI CGTCTC 1 cut(s) 608
BsmFI GGGAC 1 cut(s) 468
BsnI GGCC 2 cut(s) 5, 122
Bsp119I TTCGAA 1 cut(s) 576
Bsp143I GATC 5 cut(s) 44, 245, 343, 376, 697
BspACI CCGC 3 cut(s) 93, 284, 749
BspANI GGCC 2 cut(s) 5, 122
BspCNI CTCAG 1 cut(s) 54
BspHI TCATGA 1 cut(s) 736
BspLI GGNNCC 3 cut(s) 345, 456, 457
BspPI GGATC 4 cut(s) 253, 338, 351, 384
BspT104I TTCGAA 1 cut(s) 576
BsrDI GCAATG 1 cut(s) 456
BsrFI RCCGGY 1 cut(s) 623
BsrI ACTGG 3 cut(s) 123, 367, 510
BssAI RCCGGY 1 cut(s) 623
BssECI CCNNGG 2 cut(s) 324, 558
BssMI GATC 5 cut(s) 44, 245, 343, 376, 697
BssNI GRCGYC 1 cut(s) 601
BssT1I CCWWGG 1 cut(s) 324
Bst2UI CCWGG 1 cut(s) 651
BstACI GRCGYC 1 cut(s) 601
BstBI TTCGAA 1 cut(s) 576
BstC8I GCNNGC 2 cut(s) 270, 791
BstDEI CTNAG 2 cut(s) 41, 611
BstDSI CCRYGG 1 cut(s) 558
BstF5I GGATG 2 cut(s) 451, 748
BstH2I RGCGCY 2 cut(s) 263, 796
BstHHI GCGC 3 cut(s) 262, 497, 795
BstKTI GATC 5 cut(s) 47, 248, 346, 379, 700
BstMAI GTCTC 1 cut(s) 608
BstMBI GATC 5 cut(s) 44, 245, 343, 376, 697
BstMWI GCNNNNNNNGC 1 cut(s) 719
BstNI CCWGG 1 cut(s) 651
BstSCI CCNGG 1 cut(s) 649
BstV1I GCAGC 2 cut(s) 551, 725
BstX2I RGATCY 2 cut(s) 343, 376
BstXI CCANNNNNNTGG 1 cut(s) 442
BstYI RGATCY 2 cut(s) 343, 376
BsuRI GGCC 2 cut(s) 5, 122
BtgI CCRYGG 1 cut(s) 558
BtsCI GGATG 2 cut(s) 451, 748
BtsIMutI CAGTG 1 cut(s) 517
Cac8I GCNNGC 2 cut(s) 270, 791
CciI TCATGA 1 cut(s) 736
CfoI GCGC 3 cut(s) 262, 497, 795
Cfr10I RCCGGY 1 cut(s) 623
Cfr13I GGNCC 1 cut(s) 455
CsiI ACCWGGT 1 cut(s) 649
Csp6I GTAC 2 cut(s) 126, 687
CviAII CATG 2 cut(s) 628, 737
CviJI RGCY 9 cut(s) 5, 32, 57, 122, 167, 296, 564, 722, 781
CviKI_1 RGCY 9 cut(s) 5, 32, 57, 122, 167, 296, 564, 722, 781
CviQI GTAC 2 cut(s) 126, 687
DdeI CTNAG 2 cut(s) 41, 611
DpnI GATC 5 cut(s) 46, 247, 345, 378, 699
DpnII GATC 5 cut(s) 44, 245, 343, 376, 697
DraI TTTAAA 1 cut(s) 675
Eco130I CCWWGG 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 455
Eco47III AGCGCT 1 cut(s) 794
EcoO109I RGGNCCY 1 cut(s) 455
EcoRII CCWGG 1 cut(s) 649
EcoT14I CCWWGG 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 324
Esp3I CGTCTC 1 cut(s) 608
FaeI CATG 2 cut(s) 631, 740
FaiI YATR 8 cut(s) 117, 266, 332, 540, 548, 591, 629, 738
FaqI GGGAC 1 cut(s) 468
FatI CATG 2 cut(s) 627, 736
FauI CCCGC 1 cut(s) 277
Fnu4HI GCNGC 2 cut(s) 565, 714
FokI GGATG 2 cut(s) 458, 755
Fsp4HI GCNGC 2 cut(s) 565, 714
FspBI CTAG 3 cut(s) 353, 527, 773
GlaI GCGC 3 cut(s) 261, 496, 794
GluI GCNGC 2 cut(s) 565, 714
HaeII RGCGCY 2 cut(s) 263, 796
HaeIII GGCC 2 cut(s) 5, 122
HapII CCGG 1 cut(s) 624
HhaI GCGC 3 cut(s) 262, 497, 795
Hin1I GRCGYC 1 cut(s) 601
Hin1II CATG 2 cut(s) 631, 740
Hin6I GCGC 3 cut(s) 260, 495, 793
HinP1I GCGC 3 cut(s) 260, 495, 793
HindIII AAGCTT 2 cut(s) 720, 779
HpaII CCGG 1 cut(s) 624
HphI GGTGA 1 cut(s) 665
Hpy188I TCNGA 2 cut(s) 44, 230
Hpy188III TCNNGA 3 cut(s) 374, 527, 737
HpyAV CCTTC 7 cut(s) 288, 395, 436, 485, 562, 700, 749
HpyCH4IV ACGT 2 cut(s) 390, 601
HpyCH4V TGCA 2 cut(s) 449, 567
HpyF10VI GCNNNNNNNGC 1 cut(s) 719
HpyF3I CTNAG 2 cut(s) 41, 611
HpySE526I ACGT 2 cut(s) 390, 601
Hsp92I GRCGYC 1 cut(s) 601
Hsp92II CATG 2 cut(s) 631, 740
HspAI GCGC 3 cut(s) 260, 495, 793
KflI GGGWCCC 1 cut(s) 455
Kzo9I GATC 5 cut(s) 44, 245, 343, 376, 697
LmnI GCTCC 2 cut(s) 29, 62
LpnPI CCDG 9 cut(s) 136, 282, 359, 380, 398, 523, 636, 637, 663
Lsp1109I GCAGC 2 cut(s) 551, 725
LweI GCATC 2 cut(s) 436, 532
MabI ACCWGGT 1 cut(s) 649
MaeI CTAG 3 cut(s) 353, 527, 773
MaeII ACGT 2 cut(s) 390, 601
MaeIII GTNAC 2 cut(s) 141, 484
MalI GATC 5 cut(s) 46, 247, 345, 378, 699
MboI GATC 5 cut(s) 44, 245, 343, 376, 697
MboII GAAGA 4 cut(s) 565, 596, 685, 756
MflI RGATCY 2 cut(s) 343, 376
MluCI AATT 4 cut(s) 319, 338, 500, 516
MnlI CCTC 4 cut(s) 16, 50, 285, 733
MseI TTAA 2 cut(s) 189, 674
MslI CAYNNNNRTG 1 cut(s) 741
MspI CCGG 1 cut(s) 624
MspR9I CCNGG 1 cut(s) 651
MvaI CCWGG 1 cut(s) 651
MwoI GCNNNNNNNGC 1 cut(s) 719
NdeII GATC 5 cut(s) 44, 245, 343, 376, 697
NlaIII CATG 2 cut(s) 631, 740
NlaIV GGNNCC 3 cut(s) 345, 456, 457
NmuCI GTSAC 1 cut(s) 484
NspV TTCGAA 1 cut(s) 576
PagI TCATGA 1 cut(s) 736
PkrI GCNGC 2 cut(s) 566, 715
PpuMI RGGWCCY 1 cut(s) 455
Psp5II RGGWCCY 1 cut(s) 455
Psp6I CCWGG 1 cut(s) 649
PspGI CCWGG 1 cut(s) 649
PspN4I GGNNCC 3 cut(s) 345, 456, 457
PspPI GGNCC 1 cut(s) 455
PspPPI RGGWCCY 1 cut(s) 455
PsuI RGATCY 2 cut(s) 343, 376
RsaI GTAC 2 cut(s) 127, 688
RsaNI GTAC 2 cut(s) 126, 687
RseI CAYNNNNRTG 1 cut(s) 741
SaqAI TTAA 2 cut(s) 189, 674
SatI GCNGC 2 cut(s) 565, 714
Sau3AI GATC 5 cut(s) 44, 245, 343, 376, 697
Sau96I GGNCC 1 cut(s) 455
ScaI AGTACT 1 cut(s) 127
ScrFI CCNGG 1 cut(s) 651
SetI ASST 9 cut(s) 34, 59, 277, 393, 604, 652, 692, 724, 783
SexAI ACCWGGT 1 cut(s) 649
SfaNI GCATC 2 cut(s) 436, 532
SfuI TTCGAA 1 cut(s) 576
SinI GGWCC 1 cut(s) 455
SmiMI CAYNNNNRTG 1 cut(s) 741
Sse9I AATT 4 cut(s) 319, 338, 500, 516
SsiI CCGC 3 cut(s) 93, 284, 749
SspI AATATT 1 cut(s) 463
SspMI CTAG 3 cut(s) 353, 527, 773
StyD4I CCNGG 1 cut(s) 649
StyI CCWWGG 1 cut(s) 324
TaiI ACGT 2 cut(s) 393, 604
TaqI TCGA 4 cut(s) 156, 170, 576, 696
TasI AATT 4 cut(s) 319, 338, 500, 516
TatI WGTACW 1 cut(s) 125
Tru1I TTAA 2 cut(s) 189, 674
Tru9I TTAA 2 cut(s) 189, 674
TscAI CASTG 1 cut(s) 517
TseFI GTSAC 1 cut(s) 484
TseI GCWGC 2 cut(s) 564, 713
Tsp45I GTSAC 1 cut(s) 484
TspDTI ATGAA 2 cut(s) 756, 759
TspGWI ACGGA 1 cut(s) 503
TspRI CASTG 1 cut(s) 517
VpaK11BI GGWCC 1 cut(s) 455
XbaI TCTAGA 1 cut(s) 526
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XspI CTAG 3 cut(s) 353, 527, 773
ZraI GACGTC 1 cut(s) 602
ZrmI AGTACT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.