Prupe.8G022100_v2.0.a1

SnoaL-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0017983
Physical Location & Seq
Forward (+)
2001263 .. 2003413
2151 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G022100.1

Sequence Viewer

Length: 783 bp
ATGGCCTCTCTGACCCAATATTCTGTAGGAGCTTGCCTCACACCAAACAAGAGCTTCAACCTCAACACATTGTTTTCTGTTTTTCCACAAGCACTCAATGCAACAAGTCATATCAGAAACCAGAAGACCCAATTGTCATTAAGTGGGAAAAAGCTGCAGCAAAAATTAATTTCAAATATTGTTGGGAAAAATTGCAAATATGAGAAATGGAGAGTTTTTGGCAGTGATGATGGATCTTGTGGGATTGCACCTCTGCCACTCCCACCTTCTGTGTTGGAGGCAGTTCAAGATTTCTACAAGGCCATCAATGCCAAGGACATACAAGCTCTAGAGCAACTTCTGGCTGATGACTGCCATTATCAAGACCTTGTCTTTTATGTTCCTTTTGTAGGAAAAGAGGCGATCGTGCATTTTCTTACCAAGGTGATGGATGCAATGGGATCCAATATTCATTTTGTCATTGATGCTGCGACTGAAGGTGGAAACTTGACTGCCAGTGTAATTTGGCATCTTGAGTGGAAAGACAAAGAGATACCCTTTGCCACTGGTTGCACATTCTTTGAATATGAACAAGTTGAAGGAGAGCTCTTTCTTAGGAAAGCAACTGGCATGGAAGAACTTCCATTCAAACCAGGTGATTTGGTACTGAAACTTTTAAAGTCAGCAAGTACCTTCTTTGATCTCTATCCAATGGCGGCTGAAGCGTTGTTGCTGAAGTCTCATGGAAGTGGCCCGCATGAAGGATTAGATACACTTTTAGACAAGCTTCGGGGTAGACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SnoaL_2

Protein Analysis

261

Amino Acids

28.84

Weight (kDa)

6.06

Isoelectric Point (pI)

35.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017983)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g14400
prunus_persica Prupe.8G022100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0276731
rosa_laevigata RLG00000013368
rosa_multiflora Rmu_sc0004481.1_g000027
rosa_roxburghii Rroxscaffold_7G00192020
rosa_rugosa Rorug06G0103300
rosa_samantha Rh6AG213600 Rh6BG218500 Rh6DG211200
rosa_wichuraiana Rw6G018680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 133
AccI GTMKAC 1 cut(s) 775
AciI CCGC 2 cut(s) 695, 734
AclWI GGATC 3 cut(s) 241, 435, 448
AcuI CTGAAG 3 cut(s) 495, 720, 734
AfaI GTAC 2 cut(s) 645, 670
AfiI CCNNNNNNNGG 2 cut(s) 389, 740
AgsI TTSAA 6 cut(s) 58, 174, 287, 563, 578, 628
AjnI CCWGG 1 cut(s) 631
AluBI AGCT 6 cut(s) 32, 54, 154, 326, 586, 766
AluI AGCT 6 cut(s) 32, 54, 154, 326, 586, 766
Alw21I GWGCWC 1 cut(s) 588
Alw26I GTCTC 1 cut(s) 723
AlwI GGATC 3 cut(s) 241, 435, 448
AoxI GGCC 3 cut(s) 3, 300, 730
ApeKI GCWGC 3 cut(s) 154, 157, 467
AseI ATTAAT 1 cut(s) 167
Asp700I GAANNNNTTC 1 cut(s) 618
AspS9I GGNCC 1 cut(s) 731
AsuHPI GGTGA 2 cut(s) 436, 647
BamHI GGATCC 1 cut(s) 440
BanII GRGCYC 1 cut(s) 588
BbsI GAAGAC 1 cut(s) 131
Bbv12I GWGCWC 1 cut(s) 588
BbvI GCAGC 3 cut(s) 141, 169, 454
BccI CCATC 3 cut(s) 224, 311, 421
BciT130I CCWGG 1 cut(s) 633
BcoDI GTCTC 1 cut(s) 723
BfaI CTAG 1 cut(s) 329
BfmI CTRYAG 2 cut(s) 24, 155
BisI GCNGC 4 cut(s) 155, 158, 468, 696
BlsI GCNGC 4 cut(s) 156, 159, 469, 697
Bme1390I CCNGG 1 cut(s) 633
BmgT120I GGNCC 1 cut(s) 731
BmiI GGNNCC 1 cut(s) 442
BmrFI CCNGG 1 cut(s) 633
BmsI GCATC 3 cut(s) 421, 454, 517
BpiI GAAGAC 1 cut(s) 131
BplI GAGNNNNNCTC 2 cut(s) 21, 53
BpuEI CTTGAG 1 cut(s) 533
BsaBI GATNNNNATC 1 cut(s) 684
BsaJI CCNNGG 2 cut(s) 312, 420
Bsc4I CCNNNNNNNGG 2 cut(s) 389, 740
Bse1I ACTGG 3 cut(s) 495, 550, 610
Bse3DI GCAATG 1 cut(s) 441
Bse8I GATNNNNATC 1 cut(s) 684
BseBI CCWGG 1 cut(s) 633
BseDI CCNNGG 2 cut(s) 312, 420
BseGI GGATG 1 cut(s) 436
BseJI GATNNNNATC 1 cut(s) 684
BseLI CCNNNNNNNGG 2 cut(s) 389, 740
BseMI GCAATG 1 cut(s) 441
BseNI ACTGG 3 cut(s) 495, 550, 610
BseXI GCAGC 3 cut(s) 141, 169, 454
Bsh1285I CGRYCG 1 cut(s) 405
BshFI GGCC 3 cut(s) 5, 302, 732
BsiEI CGRYCG 1 cut(s) 405
BsiHKAI GWGCWC 1 cut(s) 588
BslI CCNNNNNNNGG 2 cut(s) 389, 740
BsmAI GTCTC 1 cut(s) 723
BsnI GGCC 3 cut(s) 5, 302, 732
Bsp1286I GDGCHC 1 cut(s) 588
Bsp143I GATC 4 cut(s) 233, 402, 440, 679
BspACI CCGC 2 cut(s) 695, 734
BspANI GGCC 3 cut(s) 5, 302, 732
BspLI GGNNCC 1 cut(s) 442
BspMAI CTGCAG 1 cut(s) 159
BspPI GGATC 3 cut(s) 241, 435, 448
BsrDI GCAATG 1 cut(s) 441
BsrI ACTGG 3 cut(s) 495, 550, 610
BssECI CCNNGG 2 cut(s) 312, 420
BssMI GATC 4 cut(s) 233, 402, 440, 679
BssT1I CCWWGG 2 cut(s) 312, 420
Bst2UI CCWGG 1 cut(s) 633
BstAPI GCANNNNNTGC 1 cut(s) 98
BstC8I GCNNGC 2 cut(s) 34, 734
BstDEI CTNAG 1 cut(s) 593
BstENI CCTNNNNNAGG 1 cut(s) 387
BstF5I GGATG 1 cut(s) 436
BstKTI GATC 4 cut(s) 236, 405, 443, 682
BstMAI GTCTC 1 cut(s) 723
BstMBI GATC 4 cut(s) 233, 402, 440, 679
BstMCI CGRYCG 1 cut(s) 405
BstMWI GCNNNNNNNGC 3 cut(s) 98, 308, 701
BstNI CCWGG 1 cut(s) 633
BstSCI CCNGG 1 cut(s) 631
BstSFI CTRYAG 2 cut(s) 24, 155
BstV1I GCAGC 3 cut(s) 141, 169, 454
BstV2I GAAGAC 1 cut(s) 131
BstX2I RGATCY 2 cut(s) 233, 440
BstXI CCANNNNNNTGG 1 cut(s) 427
BstYI RGATCY 2 cut(s) 233, 440
BsuRI GGCC 3 cut(s) 5, 302, 732
BtsCI GGATG 1 cut(s) 436
BtsI GCAGTG 1 cut(s) 229
BtsIMutI CAGTG 4 cut(s) 229, 502, 543, 778
Cac8I GCNNGC 2 cut(s) 34, 734
Cfr13I GGNCC 1 cut(s) 731
CsiI ACCWGGT 1 cut(s) 631
Csp6I GTAC 2 cut(s) 644, 669
CviAII CATG 3 cut(s) 610, 722, 737
CviQI GTAC 2 cut(s) 644, 669
DdeI CTNAG 1 cut(s) 593
DpnI GATC 4 cut(s) 235, 404, 442, 681
DpnII GATC 4 cut(s) 233, 402, 440, 679
DraI TTTAAA 1 cut(s) 657
DrdI GACNNNNNNGTC 1 cut(s) 133
DseDI GACNNNNNNGTC 1 cut(s) 133
Ecl136II GAGCTC 1 cut(s) 586
Eco130I CCWWGG 2 cut(s) 312, 420
Eco24I GRGCYC 1 cut(s) 588
Eco53kI GAGCTC 1 cut(s) 586
Eco57I CTGAAG 3 cut(s) 495, 720, 734
EcoICRI GAGCTC 1 cut(s) 586
EcoNI CCTNNNNNAGG 1 cut(s) 387
EcoRII CCWGG 1 cut(s) 631
EcoT14I CCWWGG 2 cut(s) 312, 420
EcoT38I GRGCYC 1 cut(s) 588
ErhI CCWWGG 2 cut(s) 312, 420
FaeI CATG 3 cut(s) 613, 725, 740
FaiI YATR 8 cut(s) 111, 201, 320, 378, 567, 611, 723, 738
FatI CATG 3 cut(s) 609, 721, 736
FauI CCCGC 1 cut(s) 741
FblI GTMKAC 1 cut(s) 775
Fnu4HI GCNGC 4 cut(s) 155, 158, 468, 696
FokI GGATG 1 cut(s) 443
FriOI GRGCYC 1 cut(s) 588
Fsp4HI GCNGC 4 cut(s) 155, 158, 468, 696
FspBI CTAG 1 cut(s) 329
GluI GCNGC 4 cut(s) 155, 158, 468, 696
HaeIII GGCC 3 cut(s) 5, 302, 732
Hin1II CATG 3 cut(s) 613, 725, 740
HindIII AAGCTT 1 cut(s) 764
HphI GGTGA 2 cut(s) 436, 647
Hpy166II GTNNAC 1 cut(s) 776
Hpy188I TCNGA 2 cut(s) 12, 116
Hpy188III TCNNGA 4 cut(s) 287, 329, 362, 512
Hpy8I GTNNAC 1 cut(s) 776
HpyAV CCTTC 5 cut(s) 276, 470, 572, 682, 734
HpyCH4V TGCA 7 cut(s) 101, 157, 195, 248, 409, 434, 552
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 308, 701
HpyF3I CTNAG 1 cut(s) 593
Hsp92II CATG 3 cut(s) 613, 725, 740
Kzo9I GATC 4 cut(s) 233, 402, 440, 679
LmnI GCTCC 1 cut(s) 29
LpnPI CCDG 7 cut(s) 134, 326, 508, 531, 591, 618, 645
Lsp1109I GCAGC 3 cut(s) 141, 169, 454
LweI GCATC 3 cut(s) 421, 454, 517
MabI ACCWGGT 1 cut(s) 631
MaeI CTAG 1 cut(s) 329
MalI GATC 4 cut(s) 235, 404, 442, 681
MboI GATC 4 cut(s) 233, 402, 440, 679
MboII GAAGA 2 cut(s) 136, 626
MfeI CAATTG 1 cut(s) 131
MflI RGATCY 2 cut(s) 233, 440
MhlI GDGCHC 1 cut(s) 588
MluCI AATT 5 cut(s) 131, 164, 168, 190, 501
MmeI TCCRAC 1 cut(s) 255
MnlI CCTC 6 cut(s) 16, 47, 71, 261, 271, 391
MroXI GAANNNNTTC 1 cut(s) 618
MseI TTAA 3 cut(s) 140, 167, 656
MslI CAYNNNNRTG 1 cut(s) 726
MspR9I CCNGG 1 cut(s) 633
MunI CAATTG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 633
MwoI GCNNNNNNNGC 3 cut(s) 98, 308, 701
NdeII GATC 4 cut(s) 233, 402, 440, 679
NlaIII CATG 3 cut(s) 613, 725, 740
NlaIV GGNNCC 1 cut(s) 442
PdmI GAANNNNTTC 1 cut(s) 618
PflFI GACNNNGTC 1 cut(s) 368
PkrI GCNGC 4 cut(s) 156, 159, 469, 697
Ple19I CGATCG 1 cut(s) 405
PshBI ATTAAT 1 cut(s) 167
Psp124BI GAGCTC 1 cut(s) 588
Psp6I CCWGG 1 cut(s) 631
PspGI CCWGG 1 cut(s) 631
PspN4I GGNNCC 1 cut(s) 442
PspPI GGNCC 1 cut(s) 731
PstI CTGCAG 1 cut(s) 159
PsuI RGATCY 2 cut(s) 233, 440
PsyI GACNNNGTC 1 cut(s) 368
PvuI CGATCG 1 cut(s) 405
RsaI GTAC 2 cut(s) 645, 670
RsaNI GTAC 2 cut(s) 644, 669
RseI CAYNNNNRTG 1 cut(s) 726
SacI GAGCTC 1 cut(s) 588
SaqAI TTAA 3 cut(s) 140, 167, 656
SatI GCNGC 4 cut(s) 155, 158, 468, 696
Sau3AI GATC 4 cut(s) 233, 402, 440, 679
Sau96I GGNCC 1 cut(s) 731
ScrFI CCNGG 1 cut(s) 633
SduI GDGCHC 1 cut(s) 588
SexAI ACCWGGT 1 cut(s) 631
SfaNI GCATC 3 cut(s) 421, 454, 517
SfcI CTRYAG 2 cut(s) 24, 155
SmiMI CAYNNNNRTG 1 cut(s) 726
SmlI CTYRAG 1 cut(s) 512
SmoI CTYRAG 1 cut(s) 512
Sse9I AATT 5 cut(s) 131, 164, 168, 190, 501
SsiI CCGC 2 cut(s) 695, 734
SspI AATATT 3 cut(s) 20, 178, 448
SspMI CTAG 1 cut(s) 329
SstI GAGCTC 1 cut(s) 588
StyD4I CCNGG 1 cut(s) 631
StyI CCWWGG 2 cut(s) 312, 420
TasI AATT 5 cut(s) 131, 164, 168, 190, 501
TauI GCSGC 1 cut(s) 698
Tru1I TTAA 3 cut(s) 140, 167, 656
Tru9I TTAA 3 cut(s) 140, 167, 656
TscAI CASTG 3 cut(s) 229, 502, 550
TseI GCWGC 3 cut(s) 154, 157, 467
TspDTI ATGAA 3 cut(s) 440, 582, 753
TspRI CASTG 3 cut(s) 229, 502, 550
Tth111I GACNNNGTC 1 cut(s) 368
VspI ATTAAT 1 cut(s) 167
XagI CCTNNNNNAGG 1 cut(s) 387
XbaI TCTAGA 1 cut(s) 328
XmiI GTMKAC 1 cut(s) 775
XmnI GAANNNNTTC 1 cut(s) 618
XspI CTAG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.