Rorug06G0103300

SnoaL-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0017983
Physical Location & Seq
Reverse (-)
13711995 .. 13717729
5735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0103300.1

Sequence Viewer

Length: 5658 bp
ATGGCTGTTTGCCCCTGGGCATTCATGGGAGGCCTGGACACGGCCTCTGCGCCTCCTTCAACAGCCCCAAAATCACGCACTTTTGCATCTGTCCTCGCCAACTCAACAGAGGCTGCTATATCTCTCAGCCAACTACCATCTCCGGTTGTTCGTGGGGATAAAATTTATGTCAAGATCAATGAATCCCTATATCAGGAACAATTGAAGCAATTCAAAACCAATCTTATTGGTCGTCTTCTTCTACGTAAGGGTTCTAGACCTCTTAAGGCTGATGCCCTAAAAGGATTGCTTGCTGCTCTCTGGCAGCCTTCAAAGCCATGGCGTCTTGTGCCTCTTGGTAAAGGCTACTTTGACATTCATTTTGCCACAGAAGAGGATCTGCGTAGGGTATGGAGTGGAGGTACTTGTACTCTTCCTGATGGAATTTTTCGCCTAACTCAGTGGAAACCAGATTTTGTACCTGGAGTTTCCTTTCCACAAACTCATGCTCAAATTTGGGTTAGGTTTTATGGTCTGAGCCAAGATTATTGGCACCAACAACATCTTATGGAGATTGCTCGGGGGGTCGGAACTCCATTGCAAATTGATAAAGCCACAAGAGAAAGACAATTTGGCTACTTTGCTAGAGTCTTAATTGATGTGGATCTTGCTGGTGAACTACCACCTTCTTTGATGGTTGAGCGTGAAACTCATTGTTTTCAAATTGAAGTAGTCTATGAGAATGTGTGTACTCATTGTGGGAGGGTTGGCCACATGGCTGACCAATGCAGGGCCTTGAAGAGCTCTAACAAAGAGCAAAATGCTCAAGAACAAAAGGCAGTTAAAAAGCCTTCTCTCATTGGGCGTCAAGAGTATCGTCCCAGGACGGCTGTAAACAATGTTTCTGAGCAAAACTTGGACACTACTCCTCAGGTGCAACTCTCCCCTGATGTTGTAAACCATGAACAGATTACTAAATTTGCAGAAGATGTTCTCACTGAGGCCATTGACCAGGAATTGGATCGTATTGCAGATTTGGTCATTATTGAACCTATAACCAACGGGAAGGCTGGATGTTGTAGAGGCAACATAACTCCTCTTATCAATATGAATAATTCTGTCATCCTTGCAAACAAGGAAACTAAAGCAGGGGTTGACACTACTCCTAATGATTTTGTTGTAGTTGTTGGTCCAACTATTTTGGAGGACCCTTCGGTCCATATTTCTGATGAGAATGATGAAGTTGAGATGTGTGATGATGATGTGAGCTACAATATGGAGCTAAATGCTTATAGTACTGCCCAGCCAACCAACCCCCTTTCTTCACATAGTGGTCAGTGTTGGCATGATATGGTGGAAGAGGAAAATATTATTGATCTGGCAGATTTAGCTACGGGTCTTGCTCCCCCGGGATTCGAACATGTTGCAACTTTAGCCAAGGATGTCTCATTAATTACTGGTCATGGGGATAACGGAGATACAGAGAATGGTTTCACACCGGTTCTCTCTAAGTCTCAGCAGAAGAAACAAAGACGACAAGCTACTCAAGCTCTTGCTCGTGAAAACCCTTATCCAAAGAGGGACAGAACAAAGAATAAAAAGGGAATAGGAAACAATGACTCTCAATCCGAGCTTTCCAATATTTGCCGTATTCACAAACCAGATCTTATTTGCATTGCTGAGCCAAAGGTAAAGTTCACCTCAATTTCAGCAGTTTTTTGGTCTTCTTTGAATTTGGATCTTGTTGCAACTAATGATTGTGGTGCGGCTCTTCCAAATCTTTGGTTGTTGAAGAGTTTTCATATTCCTAATCCGACGATTATTTCCAACTCCGAGCAGCAGGTTACAATTCAGGTTCCTCTTGATAATGAGCCCAGTCAACTTTCTTTTGTATATGCTTCTACCTCTTATATCAAACGCAGGGATTTATGGCAACATCTTTATGCTCTTCGTCCTCAAACGTCTATCCCATGGATGGTAATTGGTGACTTCAACGCTGTGTTAGGAGCCCACGAGAAATCGGGAGGCCCATCTCCTTCTCGCCTCTCTTGTGCAGATTTTCAAAGTTTGTTCTTTACTTGGTCAAATGGTTGGAGCACCCGTGGCCATGTTGAGCTTCGTCTGGACAGATGTCTCTGTGATACCACTTGGTTTGAAGCTTGGCCTTTTACTAGCTGTGTTGCTCTTCCCCGTGTTGTTTCTGATCATTCTCCACTGATTTTCTCTGCTTCAAAACTCTCCCCAAGTGGTCCTAAGCCTTTCAGGTTTCAGTCTATGTGGTTGCAGCATCCAAATTTTCATGCAGTAGTGTCTAATTGCTGGAGTTCCTTTCAACTTTGTGGCTGCCCAATGTTTGTTGCTTTGCAGAAACTAAAGGCTCTGAAACAGTGTCTGCGTGATTGGAACAAAGCGGTCTTTGGTAATGTCCATCAAAATGTTGCTGCTGCTCGCGAAAATCTAGTCACCATACAACATGATATCGCGACCCGTGGCATGACTGATCAAAAGTTTGAGGATGAGATTGCTGCAAAGTCTTCAGTCTTAGAGGCTCTCAGGTTGCAAGAAACCTTTTGGAAAGATAGAGCTCGAGTTAAGTGGCTTACTGATGGGGATCGAAGTACATCTTTTTTCCATACTTATGCCAAGGTTCGTGCAGCAAAGGGTCAAATGTCTTCTATCCGTGTGGGGGAGCGGTTACTTACTGACCCTTCAGACATTGCAGCACACACTGTGGCTTTTTATCAGAATCTCTATGATATTTCCTCCCCTTCTACAAACGTGGATGAGGTTTGTTCTGTTATCCCATCTTTGGTGACAGACGATGAAAATGTGGTGCTATCTGCAATTCCTACATCTGAGGAAATTAGAAACGCAGTTTTTTCTATGGATGGTTCTAGTGCTCCAGGGCCCGATGGTTTTTCATGGTCTTTTTATCATGCTTGTTGGGATATTGTTGGTACTGATGTGGTGGCATGTGTTCGTCAATTTTTTCTTCAAAACTGGATCCTCCCCAACATGAATTGCAACTTTTTAGTTCTCATTCCAAAAGTCCCAAATGCTCAACTTATTACTCAGTTTCGCCCAATTGCCTTAGCCAATTTTCTCTTCAAGATCATTCCGAAGATTTTGGCTTCTCGCTTGGGGTCTATTGCTGCACGCATAATTTCTCCTCAGCAATCTGCCTTCTTACCTGGTAGACGAATCAATCACTGTATTGGTATGGTTTCGGAATGTTTTAACTTATTGGACCGAAAGGCTTATGGTGGAAATGTGGGAATCAAAGTGGATATAGCAAAGGCATTTGACACTCTGAATTGGGATTTTCTGCTCCGAGTTTTAAGCAATTTTGGGTTCTCTCCTACTTTCACTAGTTGGGTCAGCTCTATTCTTTACTCAGCAAGATTATCTCTTTTAATCAATGGCTCTCCTCAAGGTTTTTTTAAGTGTGCTCGTGGTGTTAGACAAGGAGATCCTCTTTCTCCACTCTTATTCTGCCTTGCAGAGGAGGCTCTTAGCCGGGGTCTTCACCTACTTCTCCAAACCCGTCAATTGAAGCCAATTTCTTTTCCCAGGAATTGCACTGCACCGTCTCATGTGTTATATGCAGATGACCTCATGGTGTTTTGCCGTGGGGACAAAAACTCTCTTAAACGTCTGCGTGGGTTTTTTGACCGTTATAGTGCTGCTTCAGGGCAATTCATTAATGCGGAGAAAAGTACTTTCTATCTTGGAGCTAGGTCTCGTCATAGGAAAGGTACTGTTCAACGTATTTTGGGTTTTCATGCAGGGCGTCTACCTTTTATTTATCTAGGAGTTCCTATATTTTGTGGAAAACCCCGCAGCTGTCATCTCCAAGTTATTGCCGATAGAGCTAAGTCAAGGTTAATGGGTTGGCAGGGGAGGCTTCTCTCTATGGCTGGGCGTACTCAACTTGTGCAATCTGTTTTTCAAAGTATGCTTCTTCATAGTTTTTCAGTGTATCAATGGCCTGCTTACCTTGTGAAGAAGTTATCTACTTGGGCGCGTAATTTTATATGGTCCGGAAATATTGAGACTCGGAAAATTGTCACTGTTGCTTGGACTCAAGTTTGTGCTCCGAAAAAAGAGGGCGGGGTTGGTATTCGTGACCTGGCAACTCTTAATTCTGCGGCTGTTCTAAGGTTTGCATGGAACTCTTTCACTTCTTTGAATCAATGGGGTCATTATATGCGAACTCGTTACCCTATTGTATCTAGCTCCAAAGTGAGTTATCGCAAATCATCAATCTGGCCAGGCTTCCGTTCTATTGCTCTTCATATCACCCACAATTGTCGTTGGATTATTGGAGATGGTCGTTCAGTGTCCTTTTGGAAAGATAAATGGCTTCAGGATCCAATTTTGAAAATTTTGGGTTTTTTCGACTGGTCAGGATTCAGTGATTTACGAGTGGCAGATTTCATCTCAGATCAGTCTTGGCAGTTCCCCTCTTTTTTCCTAGATACCTTTCCAGACTTGTACAGAAAAATTTCTGATATTTGTCTCCCTTTAGACACAGAACCTGATATGCTAATTTGGGAGTCTACAGCCTCTGGAGAGTTATCTTTCACTAACTCTTATAACTTGCTTAGACGTCACTTTATTTTGAGAGACTGGGCTTCTACTATTTGGCATTCCTTCATTCCTCCGCGCTATTCTTTCTTGGCTTGGAGGATTCTCCTTGATCGCTTGCCCACTGATGATCGGTTGAAAAGAGGTGGGATTCCGGTTGTGTCCATCTGCCAATTATGCAACAGTTCGGCAGAGTCAGCGTTGCACCTATTTTTACATTGTCCTTTTTCCCAACATCTTTGGGGATGGCTGGCAACTCAGTTTGGAACCTCACTTCCTGCTTATAGCTCTCTGTTGGATTTTTGGGTTGGCTTTTGTCACAAGGTTTTCTCCCCTCAGCTTTATAATTTGTGGTTGGCAGCTGGCTTGCTTACTTTCATGGAAATTTGGAAGGCGCGAAATAGACTCAGGTTTGATGATCGATCTTCTATCTTTTCTACACTGTGTTGTTCAATTATGGCATGGCTTCGGCAATTTGGTTCCCTCGTTCCTGGTCACTTTAAGGGCGTCCTTGATTCCCGACTATTATCTTCCCTTGGGGTGTGCCCCAAGCCCCGTAATGCGCCCAAGATTCAACGTGTCATATGGCATCCCCCCCTCTTTCCTTGGGTCAAAGTTAACACTGATGGTCTGGCGAAAGGTAATCCTGGTCCTGCAGCTTGTGGGGGAGTCTTTCGTGATGCCTCTGGGGTTTATTTAGGGAGTTTTTGCCAACCTCTTGGTCGCAATTCATCCTTCTATGCTGAACTTTGTGCGGTTATTGTGTCTATTGAAGTTGCTTTCACCAGAGGTTGGACTACTCTGTGGTTGGAAAGCGATTCTACTAGTGTTTTAGCATCTCTTTCCTCCATTTCTTTCTCTCCTCCATGGGACTTGAGAGTTAGATGGCAAAACTGCCTGAAGAACATTCAACAAATGCAATTTCGGAGCACTCATATTTTTAGGGAAGGGAATGCAGCTGCTGATAAGATGGCAAACTTAGGTGTTTCAAAGCACTCATTTACTTGGTATCCTAGCCCTCCTGCAGAGCTTCACAGGTACTTGCAGGCTGATTTTTTGGGACTCCCAAATTATCGCTTCACAGGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SnoaL_2

Protein Analysis

1885

Amino Acids

211.94

Weight (kDa)

8.92

Isoelectric Point (pI)

42.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 70 - 154 8.8e-07 Domain of unknown function (DUF4283)
Exo_endo_phos PF03372 533 - 729 7e-07 Endonuclease/Exonuclease/phosphatase family
RVT_1 PF00078 1010 - 1266 1.8e-30 Reverse transcriptase (RNA-dependent DNA polymerase)
zf-RVT PF13966 1521 - 1603 3.6e-23 zinc-binding in reverse transcriptase
RVT_3 PF13456 1729 - 1849 6.5e-16 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017983)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g14400
prunus_persica Prupe.8G022100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0276731
rosa_laevigata RLG00000013368
rosa_multiflora Rmu_sc0004481.1_g000027
rosa_roxburghii Rroxscaffold_7G00192020
rosa_rugosa Rorug06G0103300
rosa_samantha Rh6AG213600 Rh6BG218500 Rh6DG211200
rosa_wichuraiana Rw6G018680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 4575, 4911
AasI GACNNNNNNGTC 1 cut(s) 1193
AatII GACGTC 1 cut(s) 4591
Acc36I ACCTGC 1 cut(s) 1810
AccB1I GGYRCC 1 cut(s) 531
AccB7I CCANNNNNTGG 2 cut(s) 997, 5358
AccBSI CCGCTC 1 cut(s) 2671
AccI GTMKAC 3 cut(s) 3175, 3772, 4538
AccII CGCG 5 cut(s) 2430, 2462, 4003, 4645, 4963
AccIII TCCGGA 1 cut(s) 4019
AciI CCGC 9 cut(s) 1745, 2390, 2671, 3686, 3817, 4089, 4127, 4643, 5321
AcoI YGGCCR 3 cut(s) 748, 2083, 4247
AcsI RAATTY 9 cut(s) 162, 423, 492, 956, 1711, 2272, 4362, 4482, 4950
AcuI CTGAAG 5 cut(s) 2499, 2673, 3651, 4328, 5486
AcyI GRCGYC 5 cut(s) 322, 844, 3769, 4588, 5073
AdeI CACNNNGTG 2 cut(s) 1310, 2710
AfiI CCNNNNNNNGG 9 cut(s) 40, 193, 769, 997, 1954, 2665, 2788, 3481, 5358
AflII CTTAAG 1 cut(s) 263
AflIII ACRYGT 2 cut(s) 1399, 5143
AgeI ACCGGT 1 cut(s) 1477
AhlI ACTAGT 2 cut(s) 3347, 5390
AjuI GAANNNNNNNTTGG 4 cut(s) 594, 626, 3068, 3100
AloI GAACNNNNNNTCC 2 cut(s) 4825, 4857
Alw21I GWGCWC 7 cut(s) 785, 2078, 2566, 2881, 3430, 4075, 5498
Alw26I GTCTC 8 cut(s) 1429, 1497, 2117, 3573, 3723, 4025, 4502, 4599
AlwNI CAGNNNCTG 5 cut(s) 113, 2371, 4517, 4547, 5528
Ama87I CYCGRG 3 cut(s) 558, 1387, 2565
Aor13HI TCCGGA 1 cut(s) 4019
ApaI GGGCCC 1 cut(s) 2889
ApoI RAATTY 9 cut(s) 162, 423, 492, 956, 1711, 2272, 4362, 4482, 4950
ArsI GACNNNNNNTTYG 4 cut(s) 344, 376, 2424, 2456
AseI ATTAAT 2 cut(s) 1430, 3681
AsiGI ACCGGT 1 cut(s) 1477
Asp700I GAANNNNTTC 5 cut(s) 209, 969, 1469, 4154, 4483
AspLEI GCGC 5 cut(s) 52, 4003, 4647, 4963, 5131
AsuC2I CCSGG 3 cut(s) 1388, 1389, 3497
AsuHPI GGTGA 8 cut(s) 665, 1669, 1976, 2434, 2803, 3497, 4270, 5341
AsuII TTCGAA 1 cut(s) 1395
AvaI CYCGRG 3 cut(s) 558, 1387, 2565
AvaII GGWCC 7 cut(s) 1169, 1186, 1195, 2228, 3226, 4017, 5216
AxyI CCTNAGG 1 cut(s) 909
BaeGI GKGCMC 2 cut(s) 2889, 5114
BaeI ACNNNNGTAYC 2 cut(s) 2928, 2961
BalI TGGCCA 3 cut(s) 750, 2085, 4249
BamHI GGATCC 2 cut(s) 2982, 4348
BanI GGYRCC 1 cut(s) 531
BanII GRGCYC 5 cut(s) 785, 1854, 1990, 2566, 2889
BauI CACGAG 3 cut(s) 1536, 1991, 3429
BbsI GAAGAC 5 cut(s) 227, 1695, 2505, 2643, 3494
Bbv12I GWGCWC 7 cut(s) 785, 2078, 2566, 2881, 3430, 4075, 5498
BbvCI CCTCAGC 2 cut(s) 3150, 4902
BceAI ACGGC 4 cut(s) 57, 882, 1611, 3591
BcgI CGANNNNNNTGC 2 cut(s) 1385, 1419
BciVI GTATCC 1 cut(s) 5586
BclI TGATCA 2 cut(s) 2182, 2479
BcnI CCSGG 3 cut(s) 1388, 1389, 3497
BcoDI GTCTC 8 cut(s) 1429, 1497, 2117, 3573, 3723, 4025, 4502, 4599
BcuI ACTAGT 2 cut(s) 3347, 5390
BfmI CTRYAG 3 cut(s) 4539, 5220, 5589
BfrI CTTAAG 1 cut(s) 263
BfuAI ACCTGC 1 cut(s) 1810
BfuI GTATCC 1 cut(s) 5586
BglII AGATCT 1 cut(s) 1642
BlpI GCTNAGC 1 cut(s) 1659
BmcAI AGTACT 2 cut(s) 1276, 3697
Bme18I GGWCC 7 cut(s) 1169, 1186, 1195, 2228, 3226, 4017, 5216
BmeT110I CYCGRG 3 cut(s) 558, 1387, 2565
BmiI GGNNCC 9 cut(s) 533, 1188, 1836, 1987, 2887, 2984, 4350, 4834, 5047
BmrI ACTGGG 2 cut(s) 1848, 4618
BmsI GCATC 6 cut(s) 95, 262, 2275, 5164, 5236, 5411
BmuI ACTGGG 2 cut(s) 1848, 4618
BoxI GACNNNNGTC 1 cut(s) 2109
BpiI GAAGAC 5 cut(s) 227, 1695, 2505, 2643, 3494
BpmI CTGGAG 4 cut(s) 483, 2320, 2865, 4569
Bpu10I CCTNAGC 4 cut(s) 2232, 3070, 3150, 4902
Bpu1102I GCTNAGC 1 cut(s) 1659
Bpu14I TTCGAA 1 cut(s) 1395
BpuEI CTTGAG 5 cut(s) 789, 1509, 3393, 4047, 5461
BpuMI CCSGG 3 cut(s) 1388, 1389, 3497
Bsa29I ATCGAT 1 cut(s) 4987
BsaAI YACGTR 1 cut(s) 245
BsaBI GATNNNNATC 2 cut(s) 642, 2589
BsaHI GRCGYC 5 cut(s) 322, 844, 3769, 4588, 5073
BsaI GGTCTC 1 cut(s) 3723
BsaWI WCCGGW 4 cut(s) 142, 1477, 4019, 4720
BsaXI ACNNNNNCTCC 4 cut(s) 385, 415, 2065, 2095
Bsc4I CCNNNNNNNGG 9 cut(s) 40, 193, 769, 997, 1954, 2665, 2788, 3481, 5358
Bse118I RCCGGY 1 cut(s) 1477
Bse1I ACTGG 5 cut(s) 1441, 1854, 2984, 4385, 4613
Bse21I CCTNAGG 1 cut(s) 909
Bse3DI GCAATG 3 cut(s) 575, 1653, 2694
Bse8I GATNNNNATC 2 cut(s) 642, 2589
BseAI TCCGGA 1 cut(s) 4019
BseCI ATCGAT 1 cut(s) 4987
BseJI GATNNNNATC 2 cut(s) 642, 2589
BseLI CCNNNNNNNGG 9 cut(s) 40, 193, 769, 997, 1954, 2665, 2788, 3481, 5358
BseMI GCAATG 3 cut(s) 575, 1653, 2694
BseNI ACTGG 5 cut(s) 1441, 1854, 2984, 4385, 4613
BseRI GAGGAG 6 cut(s) 897, 1065, 3138, 3396, 3497, 5418
BseSI GKGCMC 2 cut(s) 2889, 5114
BseYI CCCAGC 2 cut(s) 1281, 3896
BsgI GTGCAG 4 cut(s) 2052, 2652, 3117, 3546
Bsh1236I CGCG 5 cut(s) 2430, 2462, 4003, 4645, 4963
BshNI GGYRCC 1 cut(s) 531
BshTI ACCGGT 1 cut(s) 1477
BshVI ATCGAT 1 cut(s) 4987
BsiHKAI GWGCWC 7 cut(s) 785, 2078, 2566, 2881, 3430, 4075, 5498
BsiHKCI CYCGRG 3 cut(s) 558, 1387, 2565
BsiSI CCGG 6 cut(s) 143, 1388, 1478, 3496, 4020, 4721
BslFI GGGAC 6 cut(s) 843, 1574, 3014, 3626, 5450, 5640
BslI CCNNNNNNNGG 9 cut(s) 40, 193, 769, 997, 1954, 2665, 2788, 3481, 5358
BsmAI GTCTC 8 cut(s) 1429, 1497, 2117, 3573, 3723, 4025, 4502, 4599
BsmBI CGTCTC 1 cut(s) 3573
BsmFI GGGAC 6 cut(s) 843, 1574, 3014, 3626, 5450, 5640
BsmI GAATGC 3 cut(s) 20, 4627, 5524
Bso31I GGTCTC 1 cut(s) 3723
BsoBI CYCGRG 3 cut(s) 558, 1387, 2565
Bsp119I TTCGAA 1 cut(s) 1395
Bsp120I GGGCCC 1 cut(s) 2885
Bsp13I TCCGGA 1 cut(s) 4019
Bsp1407I TGTACA 1 cut(s) 4473
Bsp1720I GCTNAGC 1 cut(s) 1659
Bsp19I CCATGG 3 cut(s) 317, 1949, 5432
Bsp68I TCGCGA 2 cut(s) 2430, 2462
BspACI CCGC 9 cut(s) 1745, 2390, 2671, 3686, 3817, 4089, 4127, 4643, 5321
BspDI ATCGAT 1 cut(s) 4987
BspEI TCCGGA 1 cut(s) 4019
BspFNI CGCG 5 cut(s) 2430, 2462, 4003, 4645, 4963
BspLI GGNNCC 9 cut(s) 533, 1188, 1836, 1987, 2887, 2984, 4350, 4834, 5047
BspMAI CTGCAG 2 cut(s) 5224, 5593
BspMI ACCTGC 1 cut(s) 1810
BspQI GCTCTTC 5 cut(s) 773, 1755, 1932, 2169, 4275
BspT104I TTCGAA 1 cut(s) 1395
BspT107I GGYRCC 1 cut(s) 531
BspTI CTTAAG 1 cut(s) 263
BspTNI GGTCTC 1 cut(s) 3723
BsrBI CCGCTC 1 cut(s) 2671
BsrDI GCAATG 3 cut(s) 575, 1653, 2694
BsrFI RCCGGY 1 cut(s) 1477
BsrGI TGTACA 1 cut(s) 4473
BsrI ACTGG 5 cut(s) 1441, 1854, 2984, 4385, 4613
BssAI RCCGGY 1 cut(s) 1477
BssNI GRCGYC 5 cut(s) 322, 844, 3769, 4588, 5073
BssSI CACGAG 3 cut(s) 1536, 1991, 3429
BssT1I CCWWGG 7 cut(s) 317, 1416, 1949, 2622, 5101, 5171, 5432
Bst2BI CACGAG 3 cut(s) 1536, 1991, 3429
Bst4CI ACNGT 9 cut(s) 2367, 2710, 3191, 3567, 3653, 3739, 4051, 4751, 5010
BstACI GRCGYC 5 cut(s) 322, 844, 3769, 4588, 5073
BstAFI CTTAAG 1 cut(s) 263
BstAUI TGTACA 1 cut(s) 4473
BstBAI YACGTR 1 cut(s) 245
BstBI TTCGAA 1 cut(s) 1395
BstC8I GCNNGC 9 cut(s) 291, 2428, 3136, 3969, 4685, 4818, 4930, 4934, 5613
BstDSI CCRYGG 6 cut(s) 317, 1949, 2080, 2467, 3607, 5432
BstENI CCTNNNNNAGG 2 cut(s) 191, 3479
BstFNI CGCG 5 cut(s) 2430, 2462, 4003, 4645, 4963
BstHHI GCGC 5 cut(s) 52, 4003, 4647, 4963, 5131
BstMAI GTCTC 8 cut(s) 1429, 1497, 2117, 3573, 3723, 4025, 4502, 4599
BstNSI RCATGY 2 cut(s) 1403, 2955
BstPAI GACNNNNGTC 1 cut(s) 2109
BstSFI CTRYAG 3 cut(s) 4539, 5220, 5589
BstSLI GKGCMC 2 cut(s) 2889, 5114
BstSNI TACGTA 1 cut(s) 245
BstUI CGCG 5 cut(s) 2430, 2462, 4003, 4645, 4963
BstV2I GAAGAC 5 cut(s) 227, 1695, 2505, 2643, 3494
BstX2I RGATCY 7 cut(s) 376, 643, 1642, 1717, 2982, 3448, 4348
BstXI CCANNNNNNTGG 2 cut(s) 1761, 5285
BstYI RGATCY 7 cut(s) 376, 643, 1642, 1717, 2982, 3448, 4348
Bsu15I ATCGAT 1 cut(s) 4987
Bsu36I CCTNAGG 1 cut(s) 909
BsuI GTATCC 1 cut(s) 5586
BsuTUI ATCGAT 1 cut(s) 4987
BtgI CCRYGG 6 cut(s) 317, 1949, 2080, 2467, 3607, 5432
BtsI GCAGTG 1 cut(s) 3558
BtuMI TCGCGA 2 cut(s) 2430, 2462
BveI ACCTGC 1 cut(s) 1810
Cac8I GCNNGC 9 cut(s) 291, 2428, 3136, 3969, 4685, 4818, 4930, 4934, 5613
CaiI CAGNNNCTG 5 cut(s) 113, 2371, 4517, 4547, 5528
CfoI GCGC 5 cut(s) 52, 4003, 4647, 4963, 5131
Cfr10I RCCGGY 1 cut(s) 1477
Cfr9I CCCGGG 1 cut(s) 1387
ClaI ATCGAT 1 cut(s) 4987
CseI GACGC 4 cut(s) 311, 833, 3758, 5062
CsiI ACCWGGT 1 cut(s) 3169
CspAI ACCGGT 1 cut(s) 1477
CspCI CAANNNNNGTGG 4 cut(s) 651, 686, 2113, 2148
DraIII CACNNNGTG 2 cut(s) 1310, 2710
DrdI GACNNNNNNGTC 1 cut(s) 1193
DseDI GACNNNNNNGTC 1 cut(s) 1193
EaeI YGGCCR 3 cut(s) 748, 2083, 4247
Ecl136II GAGCTC 2 cut(s) 783, 2564
Eco105I TACGTA 1 cut(s) 245
Eco130I CCWWGG 7 cut(s) 317, 1416, 1949, 2622, 5101, 5171, 5432
Eco147I AGGCCT 1 cut(s) 33
Eco24I GRGCYC 5 cut(s) 785, 1854, 1990, 2566, 2889
Eco31I GGTCTC 1 cut(s) 3723
Eco32I GATATC 1 cut(s) 2458
Eco47I GGWCC 7 cut(s) 1169, 1186, 1195, 2228, 3226, 4017, 5216
Eco53kI GAGCTC 2 cut(s) 783, 2564
Eco57I CTGAAG 5 cut(s) 2499, 2673, 3651, 4328, 5486
Eco81I CCTNAGG 1 cut(s) 909
Eco88I CYCGRG 3 cut(s) 558, 1387, 2565
EcoICRI GAGCTC 2 cut(s) 783, 2564
EcoNI CCTNNNNNAGG 2 cut(s) 191, 3479
EcoO109I RGGNCCY 3 cut(s) 771, 1186, 2885
EcoRV GATATC 1 cut(s) 2458
EcoT14I CCWWGG 7 cut(s) 317, 1416, 1949, 2622, 5101, 5171, 5432
EcoT38I GRGCYC 5 cut(s) 785, 1854, 1990, 2566, 2889
ErhI CCWWGG 7 cut(s) 317, 1416, 1949, 2622, 5101, 5171, 5432
Esp3I CGTCTC 1 cut(s) 3573
FalI AAGNNNNNCTT 4 cut(s) 273, 305, 2587, 2619
FaqI GGGAC 6 cut(s) 843, 1574, 3014, 3626, 5450, 5640
FauI CCCGC 2 cut(s) 3824, 4082
FauNDI CATATG 1 cut(s) 5150
FbaI TGATCA 2 cut(s) 2182, 2479
FblI GTMKAC 3 cut(s) 3175, 3772, 4538
FriOI GRGCYC 5 cut(s) 785, 1854, 1990, 2566, 2889
GlaI GCGC 5 cut(s) 51, 4002, 4646, 4962, 5130
GsaI CCCAGC 2 cut(s) 1285, 3900
GsuI CTGGAG 4 cut(s) 483, 2320, 2865, 4569
HapII CCGG 6 cut(s) 143, 1388, 1478, 3496, 4020, 4721
HgaI GACGC 4 cut(s) 311, 833, 3758, 5062
HhaI GCGC 5 cut(s) 52, 4003, 4647, 4963, 5131
Hin1I GRCGYC 5 cut(s) 322, 844, 3769, 4588, 5073
Hin6I GCGC 5 cut(s) 50, 4001, 4645, 4961, 5129
HinP1I GCGC 5 cut(s) 50, 4001, 4645, 4961, 5129
HincII GTYRAC 3 cut(s) 1135, 1859, 5185
HindII GTYRAC 3 cut(s) 1135, 1859, 5185
HindIII AAGCTT 1 cut(s) 2136
HpaI GTTAAC 1 cut(s) 5185
HpaII CCGG 6 cut(s) 143, 1388, 1478, 3496, 4020, 4721
HphI GGTGA 8 cut(s) 665, 1669, 1976, 2434, 2803, 3497, 4270, 5341
Hpy99I CGWCG 1 cut(s) 1798
HpyCH4III ACNGT 9 cut(s) 2367, 2710, 3191, 3567, 3653, 3739, 4051, 4751, 5010
HpyCH4IV ACGT 7 cut(s) 244, 1940, 2757, 3631, 3745, 4588, 5143
HpySE526I ACGT 7 cut(s) 244, 1940, 2757, 3631, 3745, 4588, 5143
Hsp92I GRCGYC 5 cut(s) 322, 844, 3769, 4588, 5073
HspAI GCGC 5 cut(s) 50, 4001, 4645, 4961, 5129
Kpn2I TCCGGA 1 cut(s) 4019
Ksp22I TGATCA 2 cut(s) 2182, 2479
KspAI GTTAAC 1 cut(s) 5185
LguI GCTCTTC 5 cut(s) 773, 1755, 1932, 2169, 4275
LweI GCATC 6 cut(s) 95, 262, 2275, 5164, 5236, 5411
MabI ACCWGGT 1 cut(s) 3169
MaeII ACGT 7 cut(s) 244, 1940, 2757, 3631, 3745, 4588, 5143
MbiI CCGCTC 1 cut(s) 2671
MfeI CAATTG 4 cut(s) 200, 3063, 3527, 4285
MflI RGATCY 7 cut(s) 376, 643, 1642, 1717, 2982, 3448, 4348
MlsI TGGCCA 3 cut(s) 750, 2085, 4249
MluNI TGGCCA 3 cut(s) 750, 2085, 4249
MlyI GAGTC 9 cut(s) 636, 1592, 4027, 4054, 4544, 4769, 4965, 5244, 5622
MmeI TCCRAC 9 cut(s) 547, 1196, 1817, 1830, 2051, 4274, 4842, 5339, 5355
Mox20I TGGCCA 3 cut(s) 750, 2085, 4249
MroI TCCGGA 1 cut(s) 4019
MroXI GAANNNNTTC 5 cut(s) 209, 969, 1469, 4154, 4483
MscI TGGCCA 3 cut(s) 750, 2085, 4249
MslI CAYNNNNRTG 3 cut(s) 1920, 2412, 2616
Msp20I TGGCCA 3 cut(s) 750, 2085, 4249
MspA1I CMGCKG 3 cut(s) 3822, 4928, 5525
MspCI CTTAAG 1 cut(s) 263
MspI CCGG 6 cut(s) 143, 1388, 1478, 3496, 4020, 4721
MunI CAATTG 4 cut(s) 200, 3063, 3527, 4285
Mva1269I GAATGC 3 cut(s) 20, 4627, 5524
MvnI CGCG 5 cut(s) 2430, 2462, 4003, 4645, 4963
NciI CCSGG 3 cut(s) 1388, 1389, 3497
NcoI CCATGG 3 cut(s) 317, 1949, 5432
NdeI CATATG 1 cut(s) 5150
NlaIV GGNNCC 9 cut(s) 533, 1188, 1836, 1987, 2887, 2984, 4350, 4834, 5047
NmuCI GTSAC 8 cut(s) 1964, 2440, 2791, 4045, 4103, 4589, 4883, 5060
NruI TCGCGA 2 cut(s) 2430, 2462
NspI RCATGY 2 cut(s) 1403, 2955
NspV TTCGAA 1 cut(s) 1395
PaeR7I CTCGAG 1 cut(s) 2565
PasI CCCWGGG 1 cut(s) 15
PceI AGGCCT 1 cut(s) 33
PciI ACATGT 1 cut(s) 1399
PciSI GCTCTTC 5 cut(s) 773, 1755, 1932, 2169, 4275
PctI GAATGC 3 cut(s) 20, 4627, 5524
PdmI GAANNNNTTC 5 cut(s) 209, 969, 1469, 4154, 4483
PflMI CCANNNNNTGG 2 cut(s) 997, 5358
PinAI ACCGGT 1 cut(s) 1477
PleI GAGTC 9 cut(s) 635, 1592, 4027, 4054, 4543, 4768, 4965, 5243, 5622
PpsI GAGTC 9 cut(s) 635, 1592, 4027, 4054, 4543, 4768, 4965, 5243, 5622
Ppu21I YACGTR 1 cut(s) 245
PpuMI RGGWCCY 1 cut(s) 1186
PscI ACATGT 1 cut(s) 1399
PshAI GACNNNNGTC 1 cut(s) 2109
PshBI ATTAAT 2 cut(s) 1430, 3681
PsiI TTATAA 2 cut(s) 4575, 4911
Psp124BI GAGCTC 2 cut(s) 785, 2566
Psp5II RGGWCCY 1 cut(s) 1186
PspFI CCCAGC 2 cut(s) 1281, 3896
PspN4I GGNNCC 9 cut(s) 533, 1188, 1836, 1987, 2887, 2984, 4350, 4834, 5047
PspOMI GGGCCC 1 cut(s) 2885
PspPPI RGGWCCY 1 cut(s) 1186
PspXI VCTCGAGB 1 cut(s) 2565
PstI CTGCAG 2 cut(s) 5224, 5593
PstNI CAGNNNCTG 5 cut(s) 113, 2371, 4517, 4547, 5528
PsuI RGATCY 7 cut(s) 376, 643, 1642, 1717, 2982, 3448, 4348
PvuII CAGCTG 3 cut(s) 3822, 4928, 5525
RruI TCGCGA 2 cut(s) 2430, 2462
RseI CAYNNNNRTG 3 cut(s) 1920, 2412, 2616
SacI GAGCTC 2 cut(s) 785, 2566
SapI GCTCTTC 5 cut(s) 773, 1755, 1932, 2169, 4275
ScaI AGTACT 2 cut(s) 1276, 3697
SchI GAGTC 9 cut(s) 636, 1592, 4027, 4054, 4544, 4769, 4965, 5244, 5622
SexAI ACCWGGT 1 cut(s) 3169
SfaNI GCATC 6 cut(s) 95, 262, 2275, 5164, 5236, 5411
SfcI CTRYAG 3 cut(s) 4539, 5220, 5589
Sfr274I CTCGAG 1 cut(s) 2565
SfuI TTCGAA 1 cut(s) 1395
SinI GGWCC 7 cut(s) 1169, 1186, 1195, 2228, 3226, 4017, 5216
SlaI CTCGAG 1 cut(s) 2565
SmaI CCCGGG 1 cut(s) 1389
SmiMI CAYNNNNRTG 3 cut(s) 1920, 2412, 2616
SmlI CTYRAG 7 cut(s) 263, 804, 1524, 2565, 3408, 4062, 5440
SmoI CTYRAG 7 cut(s) 263, 804, 1524, 2565, 3408, 4062, 5440
SnaBI TACGTA 1 cut(s) 245
SpeI ACTAGT 2 cut(s) 3347, 5390
SseBI AGGCCT 1 cut(s) 33
SsiI CCGC 9 cut(s) 1745, 2390, 2671, 3686, 3817, 4089, 4127, 4643, 5321
SspI AATATT 3 cut(s) 1348, 1621, 4027
SstI GAGCTC 2 cut(s) 785, 2566
StuI AGGCCT 1 cut(s) 33
StyI CCWWGG 7 cut(s) 317, 1416, 1949, 2622, 5101, 5171, 5432
TaaI ACNGT 9 cut(s) 2367, 2710, 3191, 3567, 3653, 3739, 4051, 4751, 5010
TaiI ACGT 7 cut(s) 247, 1943, 2760, 3634, 3748, 4591, 5146
TaqI TCGA 5 cut(s) 1395, 2566, 2593, 4377, 4987
TaqII GACCGA 2 cut(s) 1183, 3243
TatI WGTACW 6 cut(s) 407, 728, 1274, 2597, 3695, 4473
TauI GCSGC 2 cut(s) 1748, 4130
TseFI GTSAC 8 cut(s) 1964, 2440, 2791, 4045, 4103, 4589, 4883, 5060
Tsp45I GTSAC 8 cut(s) 1964, 2440, 2791, 4045, 4103, 4589, 4883, 5060
TspGWI ACGGA 3 cut(s) 1467, 2648, 4247
TspMI CCCGGG 1 cut(s) 1387
Van91I CCANNNNNTGG 2 cut(s) 997, 5358
Vha464I CTTAAG 1 cut(s) 263
VpaK11BI GGWCC 7 cut(s) 1169, 1186, 1195, 2228, 3226, 4017, 5216
VspI ATTAAT 2 cut(s) 1430, 3681
XagI CCTNNNNNAGG 2 cut(s) 191, 3479
XapI RAATTY 9 cut(s) 162, 423, 492, 956, 1711, 2272, 4362, 4482, 4950
XbaI TCTAGA 1 cut(s) 254
XceI RCATGY 2 cut(s) 1403, 2955
XhoI CTCGAG 1 cut(s) 2565
XmaI CCCGGG 1 cut(s) 1387
XmiI GTMKAC 3 cut(s) 3175, 3772, 4538
XmnI GAANNNNTTC 5 cut(s) 209, 969, 1469, 4154, 4483
ZraI GACGTC 1 cut(s) 4589
ZrmI AGTACT 2 cut(s) 1276, 3697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.