Rroxscaffold_7G00192020

SnoaL-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0017983
Physical Location & Seq
Forward (+)
32977891 .. 32980755
2865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00192020.1

Sequence Viewer

Length: 636 bp
ATGGCTTCGATTACGATTTCAAATGTTAATGGAAAAAAACGCAAAGATGAACAATGGAGAGTGTTCGGAAGTGATGATGATGGATCGTGTGGGATAGCGCCTATGCCAGCACCTCCTTCTGTCGGGGAGTTGGCTAAAGATTTCTACAATGCCATCAATTCCAAGGACATAAACAAATTGGATCCACTTCTAGCAGATAACTGCCAGTATCAGGATCTTGTGTTTTACGTTCCCTTTGAAGGAAAAAAGCAGGGTGTTATCCCCTTCTTTGCCAAGATGATGGATGCAATGGGACCCAATATTGTTTTCGTCATTGATAATGTCACGGAAGGCGCAAAATTGACTGCCAGTGTAATTTGGCATCTAGAGTGGAAACATAAAGTAATACCCTTCGCCACGGGCTGCACATTCTTCGAATACGAAGAATATGATAATGGACGTCTCTTGCTTAGGAAAGCAACCGGCATGGCAGAAATCCCATTCAAACCTGGGGATTTCGTATTGAAAGTTTTAAAGTCAGCAAGTACCTTCTTCGATCTCTACCCAATGGCAGCAGAAGCTTTATTGAAATCTCATGAGGATGAACCGCACGAAGGATTATCTTCGTTACTAGATAAGCTTTTCGGCAAGCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SnoaL_2

Protein Analysis

211

Amino Acids

23.58

Weight (kDa)

5.43

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SnoaL_2 PF12680 46 - 141 2.4e-07 SnoaL-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017983)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g14400
prunus_persica Prupe.8G022100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0276731
rosa_laevigata RLG00000013368
rosa_multiflora Rmu_sc0004481.1_g000027
rosa_roxburghii Rroxscaffold_7G00192020
rosa_rugosa Rorug06G0103300
rosa_samantha Rh6AG213600 Rh6BG218500 Rh6DG211200
rosa_wichuraiana Rw6G018680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 442
AciI CCGC 1 cut(s) 587
AclWI GGATC 4 cut(s) 91, 176, 189, 222
AcyI GRCGYC 1 cut(s) 439
AfaI GTAC 1 cut(s) 526
AfeI AGCGCT 1 cut(s) 632
AfiI CCNNNNNNNGG 4 cut(s) 122, 211, 239, 593
AgsI TTSAA 5 cut(s) 21, 239, 484, 505, 568
AjnI CCWGG 1 cut(s) 487
AjuI GAANNNNNNNTTGG 2 cut(s) 290, 322
AluBI AGCT 2 cut(s) 560, 619
AluI AGCT 2 cut(s) 560, 619
Alw26I GTCTC 1 cut(s) 446
AlwI GGATC 4 cut(s) 91, 176, 189, 222
Aor51HI AGCGCT 1 cut(s) 632
ApeKI GCWGC 2 cut(s) 402, 551
AspLEI GCGC 3 cut(s) 100, 335, 633
AspS9I GGNCC 1 cut(s) 293
AsuII TTCGAA 1 cut(s) 414
AvaII GGWCC 1 cut(s) 293
BamHI GGATCC 1 cut(s) 181
BbvI GCAGC 2 cut(s) 389, 563
BccI CCATC 3 cut(s) 74, 161, 274
BcgI CGANNNNNNTGC 2 cut(s) 394, 428
BciT130I CCWGG 1 cut(s) 489
BcoDI GTCTC 1 cut(s) 446
BfaI CTAG 3 cut(s) 191, 365, 611
BfoI RGCGCY 2 cut(s) 101, 634
BisI GCNGC 2 cut(s) 403, 552
BlsI GCNGC 2 cut(s) 404, 553
Bme1390I CCNGG 1 cut(s) 489
Bme18I GGWCC 1 cut(s) 293
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 3 cut(s) 183, 294, 295
BmrFI CCNGG 1 cut(s) 489
BmsI GCATC 2 cut(s) 274, 370
Bpu10I CCTNAGC 1 cut(s) 449
Bpu14I TTCGAA 1 cut(s) 414
BsaHI GRCGYC 1 cut(s) 439
BsaJI CCNNGG 3 cut(s) 162, 396, 488
Bsc4I CCNNNNNNNGG 4 cut(s) 122, 211, 239, 593
Bse118I RCCGGY 1 cut(s) 461
Bse1I ACTGG 2 cut(s) 205, 348
Bse3DI GCAATG 1 cut(s) 294
BseBI CCWGG 1 cut(s) 489
BseDI CCNNGG 3 cut(s) 162, 396, 488
BseGI GGATG 2 cut(s) 289, 586
BseLI CCNNNNNNNGG 4 cut(s) 122, 211, 239, 593
BseMI GCAATG 1 cut(s) 294
BseNI ACTGG 2 cut(s) 205, 348
BseXI GCAGC 2 cut(s) 389, 563
BsgI GTGCAG 1 cut(s) 388
BsiSI CCGG 1 cut(s) 462
BslFI GGGAC 1 cut(s) 306
BslI CCNNNNNNNGG 4 cut(s) 122, 211, 239, 593
BsmAI GTCTC 1 cut(s) 446
BsmBI CGTCTC 1 cut(s) 446
BsmFI GGGAC 1 cut(s) 306
Bsp119I TTCGAA 1 cut(s) 414
Bsp143I GATC 4 cut(s) 83, 181, 214, 535
BspACI CCGC 1 cut(s) 587
BspHI TCATGA 1 cut(s) 574
BspLI GGNNCC 3 cut(s) 183, 294, 295
BspPI GGATC 4 cut(s) 91, 176, 189, 222
BspT104I TTCGAA 1 cut(s) 414
BsrDI GCAATG 1 cut(s) 294
BsrFI RCCGGY 1 cut(s) 461
BsrI ACTGG 2 cut(s) 205, 348
BssAI RCCGGY 1 cut(s) 461
BssECI CCNNGG 3 cut(s) 162, 396, 488
BssMI GATC 4 cut(s) 83, 181, 214, 535
BssNI GRCGYC 1 cut(s) 439
BssT1I CCWWGG 1 cut(s) 162
Bst2UI CCWGG 1 cut(s) 489
BstACI GRCGYC 1 cut(s) 439
BstBI TTCGAA 1 cut(s) 414
BstC8I GCNNGC 2 cut(s) 108, 629
BstDEI CTNAG 1 cut(s) 449
BstDSI CCRYGG 1 cut(s) 396
BstF5I GGATG 2 cut(s) 289, 586
BstH2I RGCGCY 2 cut(s) 101, 634
BstHHI GCGC 3 cut(s) 100, 335, 633
BstKTI GATC 4 cut(s) 86, 184, 217, 538
BstMAI GTCTC 1 cut(s) 446
BstMBI GATC 4 cut(s) 83, 181, 214, 535
BstMWI GCNNNNNNNGC 1 cut(s) 557
BstNI CCWGG 1 cut(s) 489
BstSCI CCNGG 1 cut(s) 487
BstV1I GCAGC 2 cut(s) 389, 563
BstX2I RGATCY 2 cut(s) 181, 214
BstXI CCANNNNNNTGG 1 cut(s) 280
BstYI RGATCY 2 cut(s) 181, 214
BtgI CCRYGG 1 cut(s) 396
BtsCI GGATG 2 cut(s) 289, 586
BtsIMutI CAGTG 1 cut(s) 355
Cac8I GCNNGC 2 cut(s) 108, 629
CciI TCATGA 1 cut(s) 574
CfoI GCGC 3 cut(s) 100, 335, 633
Cfr10I RCCGGY 1 cut(s) 461
Cfr13I GGNCC 1 cut(s) 293
Csp6I GTAC 1 cut(s) 525
CviAII CATG 2 cut(s) 466, 575
CviJI RGCY 5 cut(s) 5, 134, 402, 560, 619
CviKI_1 RGCY 5 cut(s) 5, 134, 402, 560, 619
CviQI GTAC 1 cut(s) 525
DdeI CTNAG 1 cut(s) 449
DpnI GATC 4 cut(s) 85, 183, 216, 537
DpnII GATC 4 cut(s) 83, 181, 214, 535
DraI TTTAAA 1 cut(s) 513
Eco130I CCWWGG 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 293
Eco47III AGCGCT 1 cut(s) 632
EcoO109I RGGNCCY 1 cut(s) 293
EcoRII CCWGG 1 cut(s) 487
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
Esp3I CGTCTC 1 cut(s) 446
FaeI CATG 2 cut(s) 469, 578
FaiI YATR 6 cut(s) 104, 170, 378, 429, 467, 576
FaqI GGGAC 1 cut(s) 306
FatI CATG 2 cut(s) 465, 574
Fnu4HI GCNGC 2 cut(s) 403, 552
FokI GGATG 2 cut(s) 296, 593
Fsp4HI GCNGC 2 cut(s) 403, 552
FspBI CTAG 3 cut(s) 191, 365, 611
GlaI GCGC 3 cut(s) 99, 334, 632
GluI GCNGC 2 cut(s) 403, 552
HaeII RGCGCY 2 cut(s) 101, 634
HapII CCGG 1 cut(s) 462
HhaI GCGC 3 cut(s) 100, 335, 633
Hin1I GRCGYC 1 cut(s) 439
Hin1II CATG 2 cut(s) 469, 578
Hin6I GCGC 3 cut(s) 98, 333, 631
HinP1I GCGC 3 cut(s) 98, 333, 631
HindIII AAGCTT 2 cut(s) 558, 617
HpaII CCGG 1 cut(s) 462
Hpy188I TCNGA 1 cut(s) 68
Hpy188III TCNNGA 3 cut(s) 212, 365, 575
HpyAV CCTTC 7 cut(s) 126, 233, 274, 323, 400, 538, 587
HpyCH4IV ACGT 2 cut(s) 228, 439
HpyCH4V TGCA 2 cut(s) 287, 405
HpyF10VI GCNNNNNNNGC 1 cut(s) 557
HpyF3I CTNAG 1 cut(s) 449
HpySE526I ACGT 2 cut(s) 228, 439
Hsp92I GRCGYC 1 cut(s) 439
Hsp92II CATG 2 cut(s) 469, 578
HspAI GCGC 3 cut(s) 98, 333, 631
KflI GGGWCCC 1 cut(s) 293
Kzo9I GATC 4 cut(s) 83, 181, 214, 535
LpnPI CCDG 8 cut(s) 120, 197, 218, 236, 361, 474, 475, 501
Lsp1109I GCAGC 2 cut(s) 389, 563
LweI GCATC 2 cut(s) 274, 370
MaeI CTAG 3 cut(s) 191, 365, 611
MaeII ACGT 2 cut(s) 228, 439
MaeIII GTNAC 2 cut(s) 322, 606
MalI GATC 4 cut(s) 85, 183, 216, 537
MboI GATC 4 cut(s) 83, 181, 214, 535
MboII GAAGA 4 cut(s) 403, 434, 523, 594
MflI RGATCY 2 cut(s) 181, 214
MluCI AATT 4 cut(s) 157, 176, 338, 354
MnlI CCTC 2 cut(s) 123, 571
MseI TTAA 2 cut(s) 27, 512
MslI CAYNNNNRTG 1 cut(s) 579
MspI CCGG 1 cut(s) 462
MspR9I CCNGG 1 cut(s) 489
MvaI CCWGG 1 cut(s) 489
MwoI GCNNNNNNNGC 1 cut(s) 557
NdeII GATC 4 cut(s) 83, 181, 214, 535
NlaIII CATG 2 cut(s) 469, 578
NlaIV GGNNCC 3 cut(s) 183, 294, 295
NmuCI GTSAC 1 cut(s) 322
NspV TTCGAA 1 cut(s) 414
PagI TCATGA 1 cut(s) 574
PkrI GCNGC 2 cut(s) 404, 553
PpuMI RGGWCCY 1 cut(s) 293
Psp5II RGGWCCY 1 cut(s) 293
Psp6I CCWGG 1 cut(s) 487
PspGI CCWGG 1 cut(s) 487
PspN4I GGNNCC 3 cut(s) 183, 294, 295
PspPI GGNCC 1 cut(s) 293
PspPPI RGGWCCY 1 cut(s) 293
PsuI RGATCY 2 cut(s) 181, 214
RsaI GTAC 1 cut(s) 526
RsaNI GTAC 1 cut(s) 525
RseI CAYNNNNRTG 1 cut(s) 579
SaqAI TTAA 2 cut(s) 27, 512
SatI GCNGC 2 cut(s) 403, 552
Sau3AI GATC 4 cut(s) 83, 181, 214, 535
Sau96I GGNCC 1 cut(s) 293
ScrFI CCNGG 1 cut(s) 489
SetI ASST 7 cut(s) 115, 231, 442, 490, 530, 562, 621
SfaNI GCATC 2 cut(s) 274, 370
SfuI TTCGAA 1 cut(s) 414
SinI GGWCC 1 cut(s) 293
SmiMI CAYNNNNRTG 1 cut(s) 579
Sse9I AATT 4 cut(s) 157, 176, 338, 354
SsiI CCGC 1 cut(s) 587
SspI AATATT 1 cut(s) 301
SspMI CTAG 3 cut(s) 191, 365, 611
StyD4I CCNGG 1 cut(s) 487
StyI CCWWGG 1 cut(s) 162
TaiI ACGT 2 cut(s) 231, 442
TaqI TCGA 3 cut(s) 8, 414, 534
TasI AATT 4 cut(s) 157, 176, 338, 354
Tru1I TTAA 2 cut(s) 27, 512
Tru9I TTAA 2 cut(s) 27, 512
TscAI CASTG 1 cut(s) 355
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 2 cut(s) 402, 551
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 2 cut(s) 63, 597
TspGWI ACGGA 1 cut(s) 341
TspRI CASTG 1 cut(s) 355
VpaK11BI GGWCC 1 cut(s) 293
XbaI TCTAGA 1 cut(s) 364
XspI CTAG 3 cut(s) 191, 365, 611
ZraI GACGTC 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.